| 72 |
0.0007723 |
0.0493 |
pa2659 |
N/A |
-15.67 |
0.006436 |
157 -- 217 |
75 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________156____________________________________________________________218\n_____________|______________________________________________________________|\n5'-UUG...UCUGC_______C__A____AACAC__U___UUCCCAC_____GAU__CCA______AA________CCUGU...UGC-3'\n______________AAACCGU_GA__AGC_____GA_UGA_______GGAGA___UC___UGAAGA__CUGACUGC\n______________|||||||_||__|||_____||_|||_______|||||___||___||||||__|:||||||\n______________UUUGGCA_CU__UCG_____CU_ACU_______CCUCU___AG___ACUUCU__GGCUGACG\n3'-UUU...CAGUU__________AA___GA_____________________AUU___________CA________CACCC...GUU-5'\n_____________|______________________________________________________________|\n_____________122____________________________________________________________74\n |
211 -- 217 |
75 -- 81 |
-37.728 kcal/mol |
9.87154 kcal/mol |
12.1884 kcal/mol |
156 218@LB@ | |@LB@5'-UUG...UCUGC C A AACAC U UUCCCAC GAU CCA AA CCUGU...UGC-3'@LB@ AAACCGU GA AGC GA UGA GGAGA UC UGAAGA CUGACUGC@LB@ ||||||| || ||| || ||| ||||| || |||||| |:||||||@LB@ UUUGGCA CU UCG CU ACU CCUCU AG ACUUCU GGCUGACG@LB@3'-UUU...CAGUU AA GA AUU CA CACCC...GUU-5'@LB@ | |@LB@ 122 74@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -37.728 kcal/mol@LB@Unfolding Energy - mRNA 9.87154 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 157 -- 217@LB@Position - sRNA 75 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 56 |
0.0004529 |
0.03717 |
pa2678 |
N/A |
-16.50 |
0.003530 |
187 -- 235 |
44 -- 90 |
ABC transporter permease |
|
_____________186_________________________________________________236\n_____________|___________________________________________________|\n5'-GGU...CGCCG__________UU_____A_U___UCC________________CA_______CAGUC...CCA-3'\n______________UGGAGAGUUU__CUGUG_G_GGU___CUCUUGGU__ACCGGC__GUCUCGC\n______________||:|||||::__|||:|_|_|||___||||::|:__||||||__:||||||\n______________ACUUCUCAGG__GACGC_C_CCA___GAGAGUCG__UGGCCG__UAGAGCG\n3'-UUU...AUUAG__________CU_____A________________AA______AC_______CUGGU...GUU-5'\n_____________|___________________________________________________|\n_____________91__________________________________________________43\n |
229 -- 235 |
44 -- 50 |
-54.3997 kcal/mol |
18.981 kcal/mol |
18.9194 kcal/mol |
186 236@LB@ | |@LB@5'-GGU...CGCCG UU A U UCC CA CAGUC...CCA-3'@LB@ UGGAGAGUUU CUGUG G GGU CUCUUGGU ACCGGC GUCUCGC@LB@ ||:|||||:: |||:| | ||| ||||::|: |||||| :||||||@LB@ ACUUCUCAGG GACGC C CCA GAGAGUCG UGGCCG UAGAGCG@LB@3'-UUU...AUUAG CU A AA AC CUGGU...GUU-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -54.3997 kcal/mol@LB@Unfolding Energy - mRNA 18.981 kcal/mol@LB@Unfolding Energy - sRNA 18.9194 kcal/mol@LB@@LB@Position - mRNA 187 -- 235@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 50 |
0.0003784 |
0.03426 |
pa2805 |
N/A |
-14.24 |
0.016920 |
210 -- 223 |
74 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________209_____________224\n_____________|_______________|\n5'-GCG...CGAAA_______________CGAAC...UCC-3'\n______________GAGAGUCUG_CUGCG\n______________:||||||:|_|||||\n______________UUCUCAGGC_GACGC\n3'-UUU...UAGAC_________U_____ACCCA...GUU-5'\n_____________|_______________|\n_____________89______________73\n |
212 -- 218 |
80 -- 86 |
-22.4876 kcal/mol |
2.4453 kcal/mol |
5.80631 kcal/mol |
209 224@LB@ | |@LB@5'-GCG...CGAAA CGAAC...UCC-3'@LB@ GAGAGUCUG CUGCG@LB@ :||||||:| |||||@LB@ UUCUCAGGC GACGC@LB@3'-UUU...UAGAC U ACCCA...GUU-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -22.4876 kcal/mol@LB@Unfolding Energy - mRNA 2.4453 kcal/mol@LB@Unfolding Energy - sRNA 5.80631 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 43 |
0.0002634 |
0.02815 |
pa2831 |
N/A |
-19.04 |
0.000437 |
175 -- 195 |
99 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________174___________________196\n_____________|_____________________|\n5'-CUG...CGGGU________UC___C_______UUCCC...GCC-3'\n______________CCGUGAUU__GCC_GAUGAGG\n______________||||||||__|||_|||||||\n______________GGCACUAA__CGG_CUACUCC\n3'-UUU...UUUUU________U____A_______UCUAU...GUU-5'\n_____________|_____________________|\n_____________119___________________98\n |
189 -- 195 |
99 -- 105 |
-28.8067 kcal/mol |
7.51614 kcal/mol |
2.24947 kcal/mol |
174 196@LB@ | |@LB@5'-CUG...CGGGU UC C UUCCC...GCC-3'@LB@ CCGUGAUU GCC GAUGAGG@LB@ |||||||| ||| |||||||@LB@ GGCACUAA CGG CUACUCC@LB@3'-UUU...UUUUU U A UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -19.04 kcal/mol@LB@Hybridization Energy -28.8067 kcal/mol@LB@Unfolding Energy - mRNA 7.51614 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 175 -- 195@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 14 |
1.283e-05 |
0.004211 |
pa2953 |
N/A |
-15.00 |
0.010274 |
173 -- 195 |
95 -- 119 |
electron transfer flavoprotein-ubiquinone oxidoreductase |
|
_____________172________________________196\n_____________|__________________________|\n5'-CGG...CAGAU_____________U___GU_______CGAUA...CCG-3'\n______________ACCGUGA___GCC_UGA__AGGAGAU\n______________|||||||___|||_|||__|||||||\n______________UGGCACU___CGG_ACU__UCCUCUA\n3'-UUU...GUUUU_______AAU_______AC_______UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
189 -- 195 |
95 -- 101 |
-27.294 kcal/mol |
6.46266 kcal/mol |
5.83995 kcal/mol |
172 196@LB@ | |@LB@5'-CGG...CAGAU U GU CGAUA...CCG-3'@LB@ ACCGUGA GCC UGA AGGAGAU@LB@ ||||||| ||| ||| |||||||@LB@ UGGCACU CGG ACU UCCUCUA@LB@3'-UUU...GUUUU AAU AC UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -27.294 kcal/mol@LB@Unfolding Energy - mRNA 6.46266 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 81 |
0.0009408 |
0.05338 |
pa2962 |
tmk |
-12.93 |
0.037833 |
94 -- 116 |
34 -- 55 |
thymidylate kinase |
|
_____________93________________________117\n_____________|_________________________|\n5'-CGC...AACAA______________GUA________AGCGU...AGG-3'\n______________GGC_GGUC_CGCGA___CCAGUUGA\n______________|||_|:||_|||||___||||||||\n______________CCG_CUAG_GCGCU___GGUCAACU\n3'-UUU...AAUGG___A____A________________CACUG...GUU-5'\n_____________|_________________________|\n_____________56________________________33\n |
110 -- 116 |
34 -- 40 |
-28.5201 kcal/mol |
7.46572 kcal/mol |
8.1291 kcal/mol |
93 117@LB@ | |@LB@5'-CGC...AACAA GUA AGCGU...AGG-3'@LB@ GGC GGUC CGCGA CCAGUUGA@LB@ ||| |:|| ||||| ||||||||@LB@ CCG CUAG GCGCU GGUCAACU@LB@3'-UUU...AAUGG A A CACUG...GUU-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -28.5201 kcal/mol@LB@Unfolding Energy - mRNA 7.46572 kcal/mol@LB@Unfolding Energy - sRNA 8.1291 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 129 |
0.002597 |
0.0912 |
pa2983 |
N/A |
-10.36 |
0.150975 |
196 -- 207 |
70 -- 82 |
translocation protein TolQ |
|
_____________195___________208\n_____________|_____________|\n5'-AGC...AUAUG_____________AACUG...UGC-3'\n______________CC_ACUGUGUGGG\n______________||_||||:|||||\n______________GG_UGACGCACCC\n3'-UUU...UCUCA__C__________AGAGA...GUU-5'\n_____________|_____________|\n_____________83____________69\n |
201 -- 207 |
70 -- 76 |
-20.9892 kcal/mol |
6.52553 kcal/mol |
4.10497 kcal/mol |
195 208@LB@ | |@LB@5'-AGC...AUAUG AACUG...UGC-3'@LB@ CC ACUGUGUGGG@LB@ || ||||:|||||@LB@ GG UGACGCACCC@LB@3'-UUU...UCUCA C AGAGA...GUU-5'@LB@ | |@LB@ 83 69@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -20.9892 kcal/mol@LB@Unfolding Energy - mRNA 6.52553 kcal/mol@LB@Unfolding Energy - sRNA 4.10497 kcal/mol@LB@@LB@Position - mRNA 196 -- 207@LB@Position - sRNA 70 -- 82@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 70 -- 76@LB@ |
