133 |
0.002661 |
0.0912 |
pa2511 |
N/A |
-14.22 |
0.017134 |
181 -- 210 |
98 -- 119 |
transcriptional regulator |
|
_____________180____________________________211\n_____________|______________________________|\n5'-CGG...GCCUU______UCGAGU___GAACCA_________CCCAU...CGC-3'\n______________GCCGUG______GCC______UGAUGAGGA\n______________:|||||______|||______|||||||||\n______________UGGCAC______CGG______ACUACUCCU\n3'-UUU...GUUUU______UAAU____________________CUAUU...GUU-5'\n_____________|______________________________|\n_____________120____________________________97\n |
204 -- 210 |
98 -- 104 |
-24.6889 kcal/mol |
8.22136 kcal/mol |
2.25153 kcal/mol |
180 211@LB@ | |@LB@5'-CGG...GCCUU UCGAGU GAACCA CCCAU...CGC-3'@LB@ GCCGUG GCC UGAUGAGGA@LB@ :||||| ||| |||||||||@LB@ UGGCAC CGG ACUACUCCU@LB@3'-UUU...GUUUU UAAU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -24.6889 kcal/mol@LB@Unfolding Energy - mRNA 8.22136 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 181 -- 210@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 98 -- 104@LB@ |
185 |
0.004884 |
0.1213 |
pa2528 |
N/A |
-11.72 |
0.074904 |
177 -- 197 |
98 -- 118 |
resistance-nodulation-cell division (RND) efflux membrane fusion protein |
|
_____________176___________________198\n_____________|_____________________|\n5'-CUU...CGCCU____UCUA_______A__A__ACCAU...UGG-3'\n______________CCGU____AGCCUGA_GA_GA\n______________||||____|||||||_||_||\n______________GGCA____UCGGACU_CU_CU\n3'-UUU...UUUUU____CUAA_______A__C__CUAUU...GUU-5'\n_____________|_____________________|\n_____________119___________________97\n |
185 -- 191 |
104 -- 110 |
-18.0515 kcal/mol |
4.07956 kcal/mol |
2.25139 kcal/mol |
176 198@LB@ | |@LB@5'-CUU...CGCCU UCUA A A ACCAU...UGG-3'@LB@ CCGU AGCCUGA GA GA@LB@ |||| ||||||| || ||@LB@ GGCA UCGGACU CU CU@LB@3'-UUU...UUUUU CUAA A C CUAUU...GUU-5'@LB@ | |@LB@ 119 97@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -18.0515 kcal/mol@LB@Unfolding Energy - mRNA 4.07956 kcal/mol@LB@Unfolding Energy - sRNA 2.25139 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 98 -- 118@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 104 -- 110@LB@ |
79 |
0.0008761 |
0.05078 |
pa2577 |
N/A |
-12.88 |
0.038908 |
242 -- 256 |
40 -- 55 |
transcriptional regulator |
|
_____________241______________257\n_____________|________________|\n5'-CCA...CUCAU________________GUCCC...CGA-3'\n______________GGCUGA_CUCGCGACU\n______________||||||_||||||||:\n______________CCGACU_GAGCGCUGG\n3'-UUU...AAUGG______A_________UCAAC...GUU-5'\n_____________|________________|\n_____________56_______________39\n |
250 -- 256 |
40 -- 46 |
-27.0793 kcal/mol |
6.12113 kcal/mol |
8.07531 kcal/mol |
241 257@LB@ | |@LB@5'-CCA...CUCAU GUCCC...CGA-3'@LB@ GGCUGA CUCGCGACU@LB@ |||||| ||||||||:@LB@ CCGACU GAGCGCUGG@LB@3'-UUU...AAUGG A UCAAC...GUU-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -27.0793 kcal/mol@LB@Unfolding Energy - mRNA 6.12113 kcal/mol@LB@Unfolding Energy - sRNA 8.07531 kcal/mol@LB@@LB@Position - mRNA 242 -- 256@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 40 -- 46@LB@ |
197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
121 |
0.002197 |
0.08331 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
167 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
168 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
166 |
0.004233 |
0.117 |
pa2585 |
uvrC |
-12.59 |
0.046141 |
89 -- 105 |
106 -- 123 |
excinuclease ABC subunit C |
|
_____________88_________________106\n_____________|__________________|\n5'-CGC...UCGCC___________A______AUCGC...UGG-3'\n______________GAAGACCGUGA_UA_CCU\n______________:||:|||||||_||_|||\n______________UUUUUGGCACU_AU_GGA\n3'-UUU...CCCAG___________A__C___CUACU...GUU-5'\n_____________|__________________|\n_____________124________________105\n |
93 -- 99 |
113 -- 119 |
-17.5883 kcal/mol |
2.75927 kcal/mol |
2.24138 kcal/mol |
88 106@LB@ | |@LB@5'-CGC...UCGCC A AUCGC...UGG-3'@LB@ GAAGACCGUGA UA CCU@LB@ :||:||||||| || |||@LB@ UUUUUGGCACU AU GGA@LB@3'-UUU...CCCAG A C CUACU...GUU-5'@LB@ | |@LB@ 124 105@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.5883 kcal/mol@LB@Unfolding Energy - mRNA 2.75927 kcal/mol@LB@Unfolding Energy - sRNA 2.24138 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 106 -- 123@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 113 -- 119@LB@ |
159 |
0.003984 |
0.115 |
pa2627 |
N/A |
-8.37 |
0.359084 |
22 -- 39 |
38 -- 59 |
high frequency lysogenization protein HflD |
|
_____________21_____________________40\n_____________|______________________|\n5'-CGC...UGCGC_______A______________GACUG...CCC-3'\n______________UACCGGC_GA____GCGACCAG\n______________|||||||_||____||||||||\n______________AUGGCCG_CU____CGCUGGUC\n3'-UUU...GUCGA_______A__AGAG________AACUC...GUU-5'\n_____________|______________________|\n_____________60_____________________37\n |
33 -- 39 |
38 -- 44 |
-28.3931 kcal/mol |
8.63241 kcal/mol |
11.3994 kcal/mol |
21 40@LB@ | |@LB@5'-CGC...UGCGC A GACUG...CCC-3'@LB@ UACCGGC GA GCGACCAG@LB@ ||||||| || ||||||||@LB@ AUGGCCG CU CGCUGGUC@LB@3'-UUU...GUCGA A AGAG AACUC...GUU-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -28.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.63241 kcal/mol@LB@Unfolding Energy - sRNA 11.3994 kcal/mol@LB@@LB@Position - mRNA 22 -- 39@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 38 -- 44@LB@ |
102 |
0.001679 |
0.07499 |
pa2657 |
N/A |
-10.65 |
0.130856 |
243 -- 261 |
104 -- 121 |
two-component response regulator |
|
_____________242_________________262\n_____________|___________________|\n5'-GGU...CCGAC______A___CC_______CCCGC...GCC-3'\n______________GAACUG_UGG__AGCCUGA\n______________:|||:|_||:__|||||||\n______________UUUGGC_ACU__UCGGACU\n3'-UUU...CAGUU__________AA_______ACUCC...GUU-5'\n_____________|___________________|\n_____________122_________________103\n |
255 -- 261 |
104 -- 110 |
-18.2987 kcal/mol |
5.4095 kcal/mol |
2.24203 kcal/mol |
242 262@LB@ | |@LB@5'-GGU...CCGAC A CC CCCGC...GCC-3'@LB@ GAACUG UGG AGCCUGA@LB@ :|||:| ||: |||||||@LB@ UUUGGC ACU UCGGACU@LB@3'-UUU...CAGUU AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -18.2987 kcal/mol@LB@Unfolding Energy - mRNA 5.4095 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 104 -- 110@LB@ |