11 |
1.195e-05 |
0.004211 |
pa3638 |
N/A |
-14.67 |
0.012752 |
102 -- 115 |
100 -- 120 |
tRNA(Ile)-lysidine synthase |
|
_____________101___________________116\n_____________|_____________________|\n5'-GCG...GUUAC_____________________CUACG...CCA-3'\n______________GACC_______GCCUGAUGAG\n______________:|||_______||||||||||\n______________UUGG_______CGGACUACUC\n3'-UUU...AGUUU____CACUAAU__________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
109 -- 115 |
100 -- 106 |
-19.8992 kcal/mol |
2.98005 kcal/mol |
2.24919 kcal/mol |
101 116@LB@ | |@LB@5'-GCG...GUUAC CUACG...CCA-3'@LB@ GACC GCCUGAUGAG@LB@ :||| ||||||||||@LB@ UUGG CGGACUACUC@LB@3'-UUU...AGUUU CACUAAU CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -14.67 kcal/mol@LB@Hybridization Energy -19.8992 kcal/mol@LB@Unfolding Energy - mRNA 2.98005 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 100 -- 106@LB@ |
120 |
0.002089 |
0.07999 |
pa3670 |
N/A |
-15.68 |
0.006401 |
170 -- 246 |
44 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________________________247\n_____________|__________________________________________________________________________________________|\n5'-GCU...CGGUC________AGAA____GA___________________________GAAAC_____UU_______U___GCCGG____UU_______G___UGGCG...GGC-3'\n______________GACC_UGA____AGCC__AUGAGGGG__________GAGU_CGAU_____GCGUG__GUC_CUC_GGC_____GCUG__GCUGAUC_CGC\n______________:|||_|||____||||__||||||:|__________||||_|||:_____|||||__|||_|||_:||_____:|:|__|||||||_|||\n______________UUGG_ACU____UCGG__UACUCCUC__________CUCA_GCUG_____CGCAC__CAG_GAG_UCG_____UGGC__CGACUAG_GCG\n3'-UUU...AGUUU____C___AA______AC________UAUUAGACUU____G____A_________C____A_______AA________________A___CUGGU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________121________________________________________________________________________________________43\n |
236 -- 242 |
48 -- 54 |
-64.9835 kcal/mol |
25.9985 kcal/mol |
23.3102 kcal/mol |
169 247@LB@ | |@LB@5'-GCU...CGGUC AGAA GA GAAAC UU U GCCGG UU G UGGCG...GGC-3'@LB@ GACC UGA AGCC AUGAGGGG GAGU CGAU GCGUG GUC CUC GGC GCUG GCUGAUC CGC@LB@ :||| ||| |||| ||||||:| |||| |||: ||||| ||| ||| :|| :|:| ||||||| |||@LB@ UUGG ACU UCGG UACUCCUC CUCA GCUG CGCAC CAG GAG UCG UGGC CGACUAG GCG@LB@3'-UUU...AGUUU C AA AC UAUUAGACUU G A C A AA A CUGGU...GUU-5'@LB@ | |@LB@ 121 43@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -64.9835 kcal/mol@LB@Unfolding Energy - mRNA 25.9985 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 170 -- 246@LB@Position - sRNA 44 -- 120@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 48 -- 54@LB@ |
107 |
0.001753 |
0.07531 |
pa3707 |
N/A |
-15.86 |
0.005654 |
190 -- 241 |
38 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189____________________________________________________242\n_____________|______________________________________________________|\n5'-GCC...UUCAA_____GA_______ACC__G____C___CC___________A___A__C_____CAAGC...AAG-3'\n______________AGUCU__GGCUGUG___GU_UC_C_GCU__ACCGGC_GAUC_UCG_CG_ACCAG\n______________||||:__|:|||:|___||_||_|_|||__||||||_||||_|||_||_|||||\n______________UCAGG__CUGACGC___CA_AG_G_CGA__UGGCCG_CUAG_AGC_GC_UGGUC\n3'-UUU...ACUUC______________ACC__G__A_U___A_______A_________________AACUC...GUU-5'\n_____________|______________________________________________________|\n_____________86_____________________________________________________37\n |
197 -- 203 |
74 -- 80 |
-51.3304 kcal/mol |
16.52 kcal/mol |
18.9581 kcal/mol |
189 242@LB@ | |@LB@5'-GCC...UUCAA GA ACC G C CC A A C CAAGC...AAG-3'@LB@ AGUCU GGCUGUG GU UC C GCU ACCGGC GAUC UCG CG ACCAG@LB@ ||||: |:|||:| || || | ||| |||||| |||| ||| || |||||@LB@ UCAGG CUGACGC CA AG G CGA UGGCCG CUAG AGC GC UGGUC@LB@3'-UUU...ACUUC ACC G A U A A AACUC...GUU-5'@LB@ | |@LB@ 86 37@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -51.3304 kcal/mol@LB@Unfolding Energy - mRNA 16.52 kcal/mol@LB@Unfolding Energy - sRNA 18.9581 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 38 -- 85@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 74 -- 80@LB@ |
30 |
8.033e-05 |
0.01177 |
pa3717 |
N/A |
-10.05 |
0.175331 |
209 -- 216 |
75 -- 82 |
FkbP-type peptidyl-prolyl cis-trans isomerase |
|
_____________208______217\n_____________|________|\n5'-UCU...AACGA________AGAUC...AAG-3'\n______________CCGACUGC\n______________||||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
210 -- 216 |
75 -- 81 |
-16.1929 kcal/mol |
2.05248 kcal/mol |
4.09516 kcal/mol |
208 217@LB@ | |@LB@5'-UCU...AACGA AGAUC...AAG-3'@LB@ CCGACUGC@LB@ ||||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -16.1929 kcal/mol@LB@Unfolding Energy - mRNA 2.05248 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 209 -- 216@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 75 -- 81@LB@ |
193 |
0.005243 |
0.1243 |
pa3725 |
recJ |
-10.65 |
0.130688 |
184 -- 203 |
102 -- 119 |
single-stranded-DNA-specific exonuclease RecJ |
|
_____________183__________________204\n_____________|____________________|\n5'-CGU...GUCGA____AAC__GUGA_______CGUAU...GCG-3'\n______________GCCG___GA____CCUGAUG\n______________:|||___||____|||||||\n______________UGGC___CU____GGACUAC\n3'-UUU...GUUUU____A____AAUC_______UCCUC...GUU-5'\n_____________|____________________|\n_____________120__________________101\n |
197 -- 203 |
102 -- 108 |
-15.7224 kcal/mol |
2.82992 kcal/mol |
2.24274 kcal/mol |
183 204@LB@ | |@LB@5'-CGU...GUCGA AAC GUGA CGUAU...GCG-3'@LB@ GCCG GA CCUGAUG@LB@ :||| || |||||||@LB@ UGGC CU GGACUAC@LB@3'-UUU...GUUUU A AAUC UCCUC...GUU-5'@LB@ | |@LB@ 120 101@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -15.7224 kcal/mol@LB@Unfolding Energy - mRNA 2.82992 kcal/mol@LB@Unfolding Energy - sRNA 2.24274 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 102 -- 119@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
70 |
0.0007568 |
0.0493 |
pa3767 |
N/A |
-16.77 |
0.002880 |
160 -- 178 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________159_______________________179\n_____________|_________________________|\n5'-CAU...AUAUG_________________________CCAUC...GCG-3'\n______________GAGACCG______GCCUGAUGGGGA\n______________:|:||||______||||||||:|||\n______________UUUUGGC______CGGACUACUCCU\n3'-UUU...CCAGU_______ACUAAU____________CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
172 -- 178 |
98 -- 104 |
-28.0357 kcal/mol |
9.01481 kcal/mol |
2.25226 kcal/mol |
159 179@LB@ | |@LB@5'-CAU...AUAUG CCAUC...GCG-3'@LB@ GAGACCG GCCUGAUGGGGA@LB@ :|:|||| ||||||||:|||@LB@ UUUUGGC CGGACUACUCCU@LB@3'-UUU...CCAGU ACUAAU CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -28.0357 kcal/mol@LB@Unfolding Energy - mRNA 9.01481 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 160 -- 178@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 98 -- 104@LB@ |
1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
194 |
0.005258 |
0.1243 |
pa3808 |
N/A |
-13.66 |
0.024437 |
189 -- 216 |
98 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188__________________________217\n_____________|____________________________|\n5'-CGC...UAGUA_____G____CAAUG_______AAU___CCGAU...GGC-3'\n______________GAGGA_CGUG_____AGCCUGA___GGA\n______________:|::|_||||_____|||||||___|||\n______________UUUUU_GCAC_____UCGGACU___CCU\n3'-UUU...CCCAG_____G____UAA_________ACU___CUAUU...GUU-5'\n_____________|____________________________|\n_____________124__________________________97\n |
204 -- 210 |
104 -- 110 |
-22.3129 kcal/mol |
6.40825 kcal/mol |
2.25245 kcal/mol |
188 217@LB@ | |@LB@5'-CGC...UAGUA G CAAUG AAU CCGAU...GGC-3'@LB@ GAGGA CGUG AGCCUGA GGA@LB@ :|::| |||| ||||||| |||@LB@ UUUUU GCAC UCGGACU CCU@LB@3'-UUU...CCCAG G UAA ACU CUAUU...GUU-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -22.3129 kcal/mol@LB@Unfolding Energy - mRNA 6.40825 kcal/mol@LB@Unfolding Energy - sRNA 2.25245 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 104 -- 110@LB@ |
3 |
1.464e-07 |
0.0002243 |
pa3814 |
iscS |
-11.38 |
0.090161 |
182 -- 237 |
39 -- 110 |
cysteine desulfurase |
|
_____________181___________________________________________________________________________238\n_____________|_____________________________________________________________________________|\n5'-CAC...GCGCC______U_______UUAC_____U__AAUUG________________AC____A_______________________CUCCC...UCG-3'\n______________AGCCUG___AGGAG_____CUGA_GA_____CCGA_________UCU__CUCG__UUAC_______UC_CGCGACCA\n______________||||||___|||||_____||||_||_____||||_________|||__|||:__||||_______||_||||||||\n______________UCGGAC___UCCUC_____GACU_CU_____GGCU_________AGA__GAGU__AAUG_______AG_GCGCUGGU\n3'-UUU...ACUAA______UAC_____UAUUA____U__CA_______GACGCACCC_________CG____GCCGACU__A________CAACU...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________111___________________________________________________________________________38\n |
231 -- 237 |
39 -- 45 |
-44.4171 kcal/mol |
9.67698 kcal/mol |
23.3669 kcal/mol |
181 238@LB@ | |@LB@5'-CAC...GCGCC U UUAC U AAUUG AC A CUCCC...UCG-3'@LB@ AGCCUG AGGAG CUGA GA CCGA UCU CUCG UUAC UC CGCGACCA@LB@ |||||| ||||| |||| || |||| ||| |||: |||| || ||||||||@LB@ UCGGAC UCCUC GACU CU GGCU AGA GAGU AAUG AG GCGCUGGU@LB@3'-UUU...ACUAA UAC UAUUA U CA GACGCACCC CG GCCGACU A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -44.4171 kcal/mol@LB@Unfolding Energy - mRNA 9.67698 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |