| 126 |
0.002419 |
0.08825 |
pa0452 |
N/A |
-8.57 |
0.332234 |
172 -- 209 |
83 -- 122 |
'Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif structural feature or limited sequence similarity to an experimentally studied gene)' |
|
_____________171_______________________________________210\n_____________|_________________________________________|\n5'-AGU...UCCUG_______C_C___________A_________A____U____AUUUC...UGG-3'\n______________GAAGUCG_G__UGGCC_GAUG_AGGAGGUGG__UGA_GGGU\n______________:||::||_|__|:|||_||||_|||||:|::__|||_|:||\n______________UUUUGGC_C__AUCGG_CUAC_UCCUCUAUU__ACU_CUCA\n3'-UUU...CCAGU_______A_UA_____A______________AG___U____GGCUG...GUU-5'\n_____________|_________________________________________|\n_____________123_______________________________________82\n |
193 -- 199 |
94 -- 100 |
-32.4047 kcal/mol |
13.786 kcal/mol |
10.0547 kcal/mol |
171 210@LB@ | |@LB@5'-AGU...UCCUG C C A A U AUUUC...UGG-3'@LB@ GAAGUCG G UGGCC GAUG AGGAGGUGG UGA GGGU@LB@ :||::|| | |:||| |||| |||||:|:: ||| |:||@LB@ UUUUGGC C AUCGG CUAC UCCUCUAUU ACU CUCA@LB@3'-UUU...CCAGU A UA A AG U GGCUG...GUU-5'@LB@ | |@LB@ 123 82@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -32.4047 kcal/mol@LB@Unfolding Energy - mRNA 13.786 kcal/mol@LB@Unfolding Energy - sRNA 10.0547 kcal/mol@LB@@LB@Position - mRNA 172 -- 209@LB@Position - sRNA 83 -- 122@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 13 |
1.26e-05 |
0.004211 |
pa3276 |
N/A |
-14.47 |
0.014594 |
182 -- 242 |
38 -- 108 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________181______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...UCCGU____UUCU____UACCC___U_________AUCCAUC_____A_______________C_____________CCGGG...ACA-3'\n______________UCUG____GGAG_____CUG_GGAGUCUGA________GUCU__________UGGCUG_AUC_CGCGACUGG\n______________:|||____||||_____|||_:|||||:||________||||__________:|||||_|||_||||||::|\n______________GGAC____CCUC_____GAC_UCUCAGGCU________CAGA__________GCCGAC_UAG_GCGCUGGUC\n3'-UUU...UAAUC____UACU____UAUUA___U_________GACGCACC____GAGUCGAAUG__________A_________AACUC...GUU-5'\n_____________|________________________________________________________________________|\n_____________109______________________________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-54.8405 kcal/mol |
17.042 kcal/mol |
23.3354 kcal/mol |
181 243@LB@ | |@LB@5'-CUU...UCCGU UUCU UACCC U AUCCAUC A C CCGGG...ACA-3'@LB@ UCUG GGAG CUG GGAGUCUGA GUCU UGGCUG AUC CGCGACUGG@LB@ :||| |||| ||| :|||||:|| |||| :||||| ||| ||||||::|@LB@ GGAC CCUC GAC UCUCAGGCU CAGA GCCGAC UAG GCGCUGGUC@LB@3'-UUU...UAAUC UACU UAUUA U GACGCACC GAGUCGAAUG A AACUC...GUU-5'@LB@ | |@LB@ 109 37@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -54.8405 kcal/mol@LB@Unfolding Energy - mRNA 17.042 kcal/mol@LB@Unfolding Energy - sRNA 23.3354 kcal/mol@LB@@LB@Position - mRNA 182 -- 242@LB@Position - sRNA 38 -- 108@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 33 |
8.454e-05 |
0.01177 |
pa3481 |
N/A |
-18.00 |
0.001084 |
15 -- 90 |
50 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________14_________________________________________________________________________________91\n_____________|__________________________________________________________________________________|\n5'-GUC...GAAUG______________G_A_________GCG_____UAACGAG___CU_______U__GGACAUGGGU________________GAGCU...AGG-3'\n______________GAACCGU___UGGC_U___GGGGAGG____CUGG_______GAU__UGCGUGG_UC__________UCGGCUUAUCGGCUGA\n______________:||||||___|:||_|___|:||||:____|||:_______||:__|||||||_||__________||:|||||:|||||||\n______________UUUGGCA___AUCG_A___CUCCUCU____GACU_______CUG__ACGCACC_AG__________AGUCGAAUGGCCGACU\n3'-UUU...CAGUU_______CUA____G_CUA_______AUUA____UCUCAGG____________C__AG________________________AGAGC...GUU-5'\n_____________|__________________________________________________________________________________|\n_____________122________________________________________________________________________________49\n |
84 -- 90 |
50 -- 56 |
-67.3131 kcal/mol |
26.9383 kcal/mol |
22.3832 kcal/mol |
14 91@LB@ | |@LB@5'-GUC...GAAUG G A GCG UAACGAG CU U GGACAUGGGU GAGCU...AGG-3'@LB@ GAACCGU UGGC U GGGGAGG CUGG GAU UGCGUGG UC UCGGCUUAUCGGCUGA@LB@ :|||||| |:|| | |:||||: |||: ||: ||||||| || ||:|||||:|||||||@LB@ UUUGGCA AUCG A CUCCUCU GACU CUG ACGCACC AG AGUCGAAUGGCCGACU@LB@3'-UUU...CAGUU CUA G CUA AUUA UCUCAGG C AG AGAGC...GUU-5'@LB@ | |@LB@ 122 49@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -67.3131 kcal/mol@LB@Unfolding Energy - mRNA 26.9383 kcal/mol@LB@Unfolding Energy - sRNA 22.3832 kcal/mol@LB@@LB@Position - mRNA 15 -- 90@LB@Position - sRNA 50 -- 121@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 43 |
0.0002634 |
0.02815 |
pa2831 |
N/A |
-19.04 |
0.000437 |
175 -- 195 |
99 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________174___________________196\n_____________|_____________________|\n5'-CUG...CGGGU________UC___C_______UUCCC...GCC-3'\n______________CCGUGAUU__GCC_GAUGAGG\n______________||||||||__|||_|||||||\n______________GGCACUAA__CGG_CUACUCC\n3'-UUU...UUUUU________U____A_______UCUAU...GUU-5'\n_____________|_____________________|\n_____________119___________________98\n |
189 -- 195 |
99 -- 105 |
-28.8067 kcal/mol |
7.51614 kcal/mol |
2.24947 kcal/mol |
174 196@LB@ | |@LB@5'-CUG...CGGGU UC C UUCCC...GCC-3'@LB@ CCGUGAUU GCC GAUGAGG@LB@ |||||||| ||| |||||||@LB@ GGCACUAA CGG CUACUCC@LB@3'-UUU...UUUUU U A UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -19.04 kcal/mol@LB@Hybridization Energy -28.8067 kcal/mol@LB@Unfolding Energy - mRNA 7.51614 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 175 -- 195@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 99 -- 105@LB@ |
