| 67 |
0.0007208 |
0.0493 |
pa0304 |
spuH |
-8.66 |
0.319981 |
266 -- 281 |
40 -- 54 |
polyamine transporter PotI |
|
_____________265______________282\n_____________|________________|\n5'-CAA...CCGAU_______C_G______UAUUC...CCA-3'\n______________GCUGAUC_U_GUGAUC\n______________|||||||_|_|:||:|\n______________CGACUAG_A_CGCUGG\n3'-UUU...AUGGC_________G______UCAAC...GUU-5'\n_____________|________________|\n_____________55_______________39\n |
266 -- 272 |
48 -- 54 |
-20.1848 kcal/mol |
3.44761 kcal/mol |
8.07324 kcal/mol |
265 282@LB@ | |@LB@5'-CAA...CCGAU C G UAUUC...CCA-3'@LB@ GCUGAUC U GUGAUC@LB@ ||||||| | |:||:|@LB@ CGACUAG A CGCUGG@LB@3'-UUU...AUGGC G UCAAC...GUU-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -20.1848 kcal/mol@LB@Unfolding Energy - mRNA 3.44761 kcal/mol@LB@Unfolding Energy - sRNA 8.07324 kcal/mol@LB@@LB@Position - mRNA 266 -- 281@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 80 |
0.0008839 |
0.05078 |
pa0353 |
ilvD |
-13.41 |
0.028361 |
174 -- 187 |
107 -- 121 |
dihydroxy-acid dehydratase |
|
_____________173_____________188\n_____________|_______________|\n5'-UUC...AACCC_______________GCAGG...AGA-3'\n______________GAACC_UGAUUAGCC\n______________:||||_|||||||||\n______________UUUGG_ACUAAUCGG\n3'-UUU...CAGUU_____C_________ACUAC...GUU-5'\n_____________|_______________|\n_____________122_____________106\n |
181 -- 187 |
107 -- 113 |
-19.137 kcal/mol |
3.4906 kcal/mol |
2.23534 kcal/mol |
173 188@LB@ | |@LB@5'-UUC...AACCC GCAGG...AGA-3'@LB@ GAACC UGAUUAGCC@LB@ :|||| |||||||||@LB@ UUUGG ACUAAUCGG@LB@3'-UUU...CAGUU C ACUAC...GUU-5'@LB@ | |@LB@ 122 106@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -19.137 kcal/mol@LB@Unfolding Energy - mRNA 3.4906 kcal/mol@LB@Unfolding Energy - sRNA 2.23534 kcal/mol@LB@@LB@Position - mRNA 174 -- 187@LB@Position - sRNA 107 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 132 |
0.002652 |
0.0912 |
pa0364 |
N/A |
-15.84 |
0.005742 |
174 -- 193 |
100 -- 122 |
oxidoreductase |
|
_____________173_____________________194\n_____________|_______________________|\n5'-AUU...AGCCC_______CC______________UGCAU...UGG-3'\n______________GAAGCCG____UAGCCUGA_GAG\n______________:||:|||____||||||||_|||\n______________UUUUGGC____AUCGGACU_CUC\n3'-UUU...CCAGU_______ACUA________A___CUCUA...GUU-5'\n_____________|_______________________|\n_____________123_____________________99\n |
184 -- 190 |
104 -- 110 |
-22.8122 kcal/mol |
4.73034 kcal/mol |
2.24976 kcal/mol |
173 194@LB@ | |@LB@5'-AUU...AGCCC CC UGCAU...UGG-3'@LB@ GAAGCCG UAGCCUGA GAG@LB@ :||:||| |||||||| |||@LB@ UUUUGGC AUCGGACU CUC@LB@3'-UUU...CCAGU ACUA A CUCUA...GUU-5'@LB@ | |@LB@ 123 99@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -22.8122 kcal/mol@LB@Unfolding Energy - mRNA 4.73034 kcal/mol@LB@Unfolding Energy - sRNA 2.24976 kcal/mol@LB@@LB@Position - mRNA 174 -- 193@LB@Position - sRNA 100 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 108 |
0.001802 |
0.07562 |
pa0365 |
N/A |
-14.54 |
0.013920 |
243 -- 252 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________242________253\n_____________|__________|\n5'-GCC...GACGC__________AAGUC...CCG-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
246 -- 252 |
101 -- 107 |
-17.5523 kcal/mol |
0.900236 kcal/mol |
2.11196 kcal/mol |
242 253@LB@ | |@LB@5'-GCC...GACGC AAGUC...CCG-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -17.5523 kcal/mol@LB@Unfolding Energy - mRNA 0.900236 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 243 -- 252@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 26 |
6.892e-05 |
0.01177 |
pa0375 |
ftsX |
-18.23 |
0.000891 |
153 -- 205 |
100 -- 144 |
cell division protein FtsX |
|
_____________152___________________________________________________206\n_____________|_____________________________________________________|\n5'-CUG...AUGCU_____U____C__G_____A___UCGCU________GGAUGA___________CGCCA...CGU-3'\n______________GACCC_GCAG_GU_GCCGG_UCA_____GACCGUGA______GGCCUGAUGAG\n______________|||||_|||:_||_|||||_|||_____:|||||||______:||||||||||\n______________CUGGG_CGUU_CA_CGGCC_AGU_____UUGGCACU______UCGGACUACUC\n____3'-UUUUUUU_____C____U________C___UU___________AA_______________CUCUA...GUU-5'\n_____________|_____________________________________________________|\n_____________145___________________________________________________99\n |
199 -- 205 |
100 -- 106 |
-59.0387 kcal/mol |
20.5976 kcal/mol |
20.2157 kcal/mol |
152 206@LB@ | |@LB@5'-CUG...AUGCU U C G A UCGCU GGAUGA CGCCA...CGU-3'@LB@ GACCC GCAG GU GCCGG UCA GACCGUGA GGCCUGAUGAG@LB@ ||||| |||: || ||||| ||| :||||||| :||||||||||@LB@ CUGGG CGUU CA CGGCC AGU UUGGCACU UCGGACUACUC@LB@ 3'-UUUUUUU C U C UU AA CUCUA...GUU-5'@LB@ | |@LB@ 145 99@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -59.0387 kcal/mol@LB@Unfolding Energy - mRNA 20.5976 kcal/mol@LB@Unfolding Energy - sRNA 20.2157 kcal/mol@LB@@LB@Position - mRNA 153 -- 205@LB@Position - sRNA 100 -- 144@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 138 |
0.002776 |
0.09245 |
pa0440 |
N/A |
-11.93 |
0.067049 |
197 -- 216 |
104 -- 120 |
oxidoreductase |
|
_____________196__________________217\n_____________|____________________|\n5'-CGA...GCUAC_________CGAUUC_____ACCAC...AGG-3'\n______________AACCGUGAU______CCUGA\n______________|||||||||______|||||\n______________UUGGCACUA______GGACU\n3'-UUU...AGUUU_________AUC________ACUCC...GUU-5'\n_____________|____________________|\n_____________121__________________103\n |
199 -- 205 |
112 -- 118 |
-17.8806 kcal/mol |
3.71535 kcal/mol |
2.24182 kcal/mol |
196 217@LB@ | |@LB@5'-CGA...GCUAC CGAUUC ACCAC...AGG-3'@LB@ AACCGUGAU CCUGA@LB@ ||||||||| |||||@LB@ UUGGCACUA GGACU@LB@3'-UUU...AGUUU AUC ACUCC...GUU-5'@LB@ | |@LB@ 121 103@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -17.8806 kcal/mol@LB@Unfolding Energy - mRNA 3.71535 kcal/mol@LB@Unfolding Energy - sRNA 2.24182 kcal/mol@LB@@LB@Position - mRNA 197 -- 216@LB@Position - sRNA 104 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 19 |
3.906e-05 |
0.009449 |
pa0443 |
N/A |
-14.62 |
0.013168 |
152 -- 204 |
75 -- 119 |
transporter |
|
_____________151______________________________________________________205\n_____________|________________________________________________________|\n5'-UUG...CGGCC____C________C______C_______CUAAAAGAAU_________G__CA____AACAG...UCG-3'\n______________AUCG__AUUAGCC_GAUGAG_GA_AUAA__________UCUGGAGAG_CC___UGC\n______________|:||__|||||||_||||||_||_||||__________||||:||||_||___|||\n______________UGGC__UAAUCGG_CUACUC_CU_UAUU__________AGACUUCUC_GG___ACG\n3'-UUU...GUUUU____AC_______A_________C_______________________A__CUG___CACCC...GUU-5'\n_____________|________________________________________________________|\n_____________120______________________________________________________74\n |
190 -- 196 |
84 -- 90 |
-39.3471 kcal/mol |
12.5408 kcal/mol |
12.1884 kcal/mol |
151 205@LB@ | |@LB@5'-UUG...CGGCC C C C CUAAAAGAAU G CA AACAG...UCG-3'@LB@ AUCG AUUAGCC GAUGAG GA AUAA UCUGGAGAG CC UGC@LB@ |:|| ||||||| |||||| || |||| ||||:|||| || |||@LB@ UGGC UAAUCGG CUACUC CU UAUU AGACUUCUC GG ACG@LB@3'-UUU...GUUUU AC A C A CUG CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -39.3471 kcal/mol@LB@Unfolding Energy - mRNA 12.5408 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 152 -- 204@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 126 |
0.002419 |
0.08825 |
pa0452 |
N/A |
-8.57 |
0.332234 |
172 -- 209 |
83 -- 122 |
'Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif structural feature or limited sequence similarity to an experimentally studied gene)' |
|
_____________171_______________________________________210\n_____________|_________________________________________|\n5'-AGU...UCCUG_______C_C___________A_________A____U____AUUUC...UGG-3'\n______________GAAGUCG_G__UGGCC_GAUG_AGGAGGUGG__UGA_GGGU\n______________:||::||_|__|:|||_||||_|||||:|::__|||_|:||\n______________UUUUGGC_C__AUCGG_CUAC_UCCUCUAUU__ACU_CUCA\n3'-UUU...CCAGU_______A_UA_____A______________AG___U____GGCUG...GUU-5'\n_____________|_________________________________________|\n_____________123_______________________________________82\n |
193 -- 199 |
94 -- 100 |
-32.4047 kcal/mol |
13.786 kcal/mol |
10.0547 kcal/mol |
171 210@LB@ | |@LB@5'-AGU...UCCUG C C A A U AUUUC...UGG-3'@LB@ GAAGUCG G UGGCC GAUG AGGAGGUGG UGA GGGU@LB@ :||::|| | |:||| |||| |||||:|:: ||| |:||@LB@ UUUUGGC C AUCGG CUAC UCCUCUAUU ACU CUCA@LB@3'-UUU...CCAGU A UA A AG U GGCUG...GUU-5'@LB@ | |@LB@ 123 82@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -32.4047 kcal/mol@LB@Unfolding Energy - mRNA 13.786 kcal/mol@LB@Unfolding Energy - sRNA 10.0547 kcal/mol@LB@@LB@Position - mRNA 172 -- 209@LB@Position - sRNA 83 -- 122@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 34 |
0.0001037 |
0.01388 |
pa0494 |
N/A |
-14.76 |
0.012046 |
49 -- 92 |
75 -- 117 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
_____________48_______________________________________________93\n_____________|________________________________________________|\n5'-CGA...GGCAG______C__G_____C________________C__UUU_____AG___AGGCC...CGG-3'\n______________CGUGAU_GG_CUGAU___GAGGUGA__UGAAG_AG___UCCGA__UGC\n______________||||||_:|_|||||___|||:|:|__|||||_||___|||||__|||\n______________GCACUA_UC_GACUA___CUCUAUU__ACUUC_UC___AGGCU__ACG\n3'-UUU...UUUUG______A__G_____CUC_______AG________________G____CACCC...GUU-5'\n_____________|________________________________________________|\n_____________118______________________________________________74\n |
65 -- 71 |
93 -- 99 |
-39.1416 kcal/mol |
12.2169 kcal/mol |
12.1721 kcal/mol |
48 93@LB@ | |@LB@5'-CGA...GGCAG C G C C UUU AG AGGCC...CGG-3'@LB@ CGUGAU GG CUGAU GAGGUGA UGAAG AG UCCGA UGC@LB@ |||||| :| ||||| |||:|:| ||||| || ||||| |||@LB@ GCACUA UC GACUA CUCUAUU ACUUC UC AGGCU ACG@LB@3'-UUU...UUUUG A G CUC AG G CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -39.1416 kcal/mol@LB@Unfolding Energy - mRNA 12.2169 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 49 -- 92@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 93 -- 99@LB@ |
| 136 |
0.00271 |
0.09122 |
pa0516 |
nirF |
-12.42 |
0.050980 |
176 -- 250 |
51 -- 109 |
heme d1 biosynthesis protein NirF |
pa0519 pa0509 |
_____________175___________________________________________________________________________251\n_____________|_____________________________________________________________________________|\n5'-UCC...GGACC_______C_A___________GCCCCA____CCU_C____C___C___CC_CU___C____CCCU___C________UAGCC...UCG-3'\n______________GCCUGAU_G_AGGAGA_GAUC______UGAA___G_GUCC__CU_GCG__G__UCU_CUCA____GCU_GCCGGCUG\n______________|||||||_|_||||||_:|||______||||___|_||||__||_|||__|__|||_||||____|||_:|||||||\n______________CGGACUA_C_UCCUCU_UUAG______ACUU___C_CAGG__GA_CGC__C__AGA_GAGU____CGA_UGGCCGAC\n3'-UUU...CUAAU________________A__________________U____CU______A__CC_______________A________UAGAG...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________110___________________________________________________________________________50\n |
244 -- 250 |
51 -- 57 |
-56.426 kcal/mol |
22.2414 kcal/mol |
21.7733 kcal/mol |
175 251@LB@ | |@LB@5'-UCC...GGACC C A GCCCCA CCU C C C CC CU C CCCU C UAGCC...UCG-3'@LB@ GCCUGAU G AGGAGA GAUC UGAA G GUCC CU GCG G UCU CUCA GCU GCCGGCUG@LB@ ||||||| | |||||| :||| |||| | |||| || ||| | ||| |||| ||| :|||||||@LB@ CGGACUA C UCCUCU UUAG ACUU C CAGG GA CGC C AGA GAGU CGA UGGCCGAC@LB@3'-UUU...CUAAU A U CU A CC A UAGAG...GUU-5'@LB@ | |@LB@ 110 50@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -56.426 kcal/mol@LB@Unfolding Energy - mRNA 22.2414 kcal/mol@LB@Unfolding Energy - sRNA 21.7733 kcal/mol@LB@@LB@Position - mRNA 176 -- 250@LB@Position - sRNA 51 -- 109@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 51 -- 57@LB@ |
