| 161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 76 |
0.0008254 |
0.04991 |
pa0029 |
N/A |
-13.54 |
0.026240 |
35 -- 51 |
100 -- 123 |
sulfate transporter |
|
_____________34_______________________52\n_____________|________________________|\n5'-GCU...ACAUG________________________CGACG...UGG-3'\n______________GAGAACC_______GCCUGAUGAG\n______________:|:||||_______||||||||||\n______________UUUUUGG_______CGGACUACUC\n3'-UUU...CCCAG_______CACUAAU__________CUCUA...GUU-5'\n_____________|________________________|\n_____________124______________________99\n |
45 -- 51 |
100 -- 106 |
-21.4793 kcal/mol |
5.69273 kcal/mol |
2.24995 kcal/mol |
34 52@LB@ | |@LB@5'-GCU...ACAUG CGACG...UGG-3'@LB@ GAGAACC GCCUGAUGAG@LB@ :|:|||| ||||||||||@LB@ UUUUUGG CGGACUACUC@LB@3'-UUU...CCCAG CACUAAU CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -21.4793 kcal/mol@LB@Unfolding Energy - mRNA 5.69273 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 35 -- 51@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 135 |
0.002679 |
0.0912 |
pa0035 |
trpA |
-9.18 |
0.258333 |
240 -- 261 |
101 -- 123 |
tryptophan synthase subunit alpha |
|
_____________239_____________________262\n_____________|_______________________|\n5'-GAC...AGCAG________C_CCGC_________CCUUC...CCC-3'\n______________GAAAACCG_G_____CCUGGUGA\n______________:|||||||_|_____||||:|||\n______________UUUUUGGC_C_____GGACUACU\n3'-UUU...CCCAG________A_UAAUC________CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
255 -- 261 |
101 -- 107 |
-19.6747 kcal/mol |
8.2509 kcal/mol |
2.24445 kcal/mol |
239 262@LB@ | |@LB@5'-GAC...AGCAG C CCGC CCUUC...CCC-3'@LB@ GAAAACCG G CCUGGUGA@LB@ :||||||| | ||||:|||@LB@ UUUUUGGC C GGACUACU@LB@3'-UUU...CCCAG A UAAUC CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -19.6747 kcal/mol@LB@Unfolding Energy - mRNA 8.2509 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 55 |
0.0004353 |
0.03637 |
pa0086 |
N/A |
-16.64 |
0.003171 |
21 -- 37 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________20_________________38\n_____________|__________________|\n5'-GGC...CAGAA____CA____________CCGGC...ACG-3'\n______________CGUG___GGCCUGAUGAG\n______________||||___:||||||||||\n______________GCAC___UCGGACUACUC\n3'-UUU...UUUUG____UAA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
31 -- 37 |
100 -- 106 |
-24.5052 kcal/mol |
5.62761 kcal/mol |
2.23711 kcal/mol |
20 38@LB@ | |@LB@5'-GGC...CAGAA CA CCGGC...ACG-3'@LB@ CGUG GGCCUGAUGAG@LB@ |||| :||||||||||@LB@ GCAC UCGGACUACUC@LB@3'-UUU...UUUUG UAA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -24.5052 kcal/mol@LB@Unfolding Energy - mRNA 5.62761 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 73 |
0.0008061 |
0.04991 |
pa0112 |
N/A |
-16.64 |
0.003170 |
93 -- 149 |
38 -- 90 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________92__________________________________________________________150\n_____________|___________________________________________________________|\n5'-CGG...GCUGC______AC__G_A________CUCAAG________A____________GG_________CGCGG...CCC-3'\n______________UGAAGG__GU_C_ACUGC_UG______CUCUC_GC_UAUCGGUUGAUC__CGUGGCCGG\n______________|||||:__||_|_|||||_||______|||||_||_||:|||:|||||__||:|:||:|\n______________ACUUCU__CA_G_UGACG_AC______GAGAG_CG_AUGGCCGACUAG__GCGCUGGUC\n3'-UUU...AUUAG__________G_C_____C__CCA________U__A____________A__________AACUC...GUU-5'\n_____________|___________________________________________________________|\n_____________91__________________________________________________________37\n |
141 -- 147 |
40 -- 46 |
-57.3106 kcal/mol |
21.635 kcal/mol |
19.0336 kcal/mol |
92 150@LB@ | |@LB@5'-CGG...GCUGC AC G A CUCAAG A GG CGCGG...CCC-3'@LB@ UGAAGG GU C ACUGC UG CUCUC GC UAUCGGUUGAUC CGUGGCCGG@LB@ |||||: || | ||||| || ||||| || ||:|||:||||| ||:|:||:|@LB@ ACUUCU CA G UGACG AC GAGAG CG AUGGCCGACUAG GCGCUGGUC@LB@3'-UUU...AUUAG G C C CCA U A A AACUC...GUU-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -57.3106 kcal/mol@LB@Unfolding Energy - mRNA 21.635 kcal/mol@LB@Unfolding Energy - sRNA 19.0336 kcal/mol@LB@@LB@Position - mRNA 93 -- 149@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 9 |
1.098e-05 |
0.004211 |
pa0119 |
N/A |
-18.72 |
0.000584 |
256 -- 296 |
78 -- 118 |
C4-dicarboxylate transporter DctA |
pa5479 pa1183 |
_____________255________________________________________297\n_____________|__________________________________________|\n5'-GCC...GCAAG__________________UA__C________C__________AUUC-3'\n______________UCGUGAUUGGCCUGGUGA__GG_GUGAUCUG_GGGGU_CGGC\n______________:|||||||:|||||:|||__:|_:|:|||||_:|:||_||:|\n______________GGCACUAAUCGGACUACU__UC_UAUUAGAC_UCUCA_GCUG\n3'-UUU...UUUUU__________________CC___________U_____G____ACGCA...GUU-5'\n_____________|__________________________________________|\n_____________119________________________________________77\n |
267 -- 273 |
101 -- 107 |
-51.6638 kcal/mol |
20.8263 kcal/mol |
12.1236 kcal/mol |
255 297@LB@ | |@LB@5'-GCC...GCAAG UA C C AUUC-3'@LB@ UCGUGAUUGGCCUGGUGA GG GUGAUCUG GGGGU CGGC@LB@ :|||||||:|||||:||| :| :|:||||| :|:|| ||:|@LB@ GGCACUAAUCGGACUACU UC UAUUAGAC UCUCA GCUG@LB@3'-UUU...UUUUU CC U G ACGCA...GUU-5'@LB@ | |@LB@ 119 77@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -51.6638 kcal/mol@LB@Unfolding Energy - mRNA 20.8263 kcal/mol@LB@Unfolding Energy - sRNA 12.1236 kcal/mol@LB@@LB@Position - mRNA 256 -- 296@LB@Position - sRNA 78 -- 118@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 45 |
0.0002969 |
0.02946 |
pa0151 |
N/A |
-17.56 |
0.001552 |
238 -- 273 |
39 -- 82 |
TonB-dependent receptor |
|
_____________237___________________________________________274\n_____________|_____________________________________________|\n5'-GCU...UCUCC___CC__________________C________________C____CCGUG...GCU-3'\n______________CCG__CUGU_____UC_CUCAGC___UCGGCUG_UCUCGC_GCCA\n______________|||__|||:_____||_||||||___:||||||_||||||_:|||\n______________GGC__GACG_____AG_GAGUCG___GGCCGAC_AGAGCG_UGGU\n3'-UUU...UCUCA___U_____CACCC__A______AAU_______U______C____CAACU...GUU-5'\n_____________|_____________________________________________|\n_____________83____________________________________________38\n |
256 -- 262 |
51 -- 57 |
-45.5625 kcal/mol |
9.11749 kcal/mol |
18.8872 kcal/mol |
237 274@LB@ | |@LB@5'-GCU...UCUCC CC C C CCGUG...GCU-3'@LB@ CCG CUGU UC CUCAGC UCGGCUG UCUCGC GCCA@LB@ ||| |||: || |||||| :|||||| |||||| :|||@LB@ GGC GACG AG GAGUCG GGCCGAC AGAGCG UGGU@LB@3'-UUU...UCUCA U CACCC A AAU U C CAACU...GUU-5'@LB@ | |@LB@ 83 38@LB@@LB@@LB@Energy -17.56 kcal/mol@LB@Hybridization Energy -45.5625 kcal/mol@LB@Unfolding Energy - mRNA 9.11749 kcal/mol@LB@Unfolding Energy - sRNA 18.8872 kcal/mol@LB@@LB@Position - mRNA 238 -- 273@LB@Position - sRNA 39 -- 82@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 65 |
0.0006555 |
0.04603 |
pa0184 |
N/A |
-11.46 |
0.086208 |
64 -- 73 |
101 -- 110 |
ABC transporter ATP-binding protein |
pa2294 |
_____________63_________74\n_____________|__________|\n5'-AUC...UCGGC__________UCGGC...UCC-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
67 -- 73 |
101 -- 107 |
-16.8516 kcal/mol |
3.27707 kcal/mol |
2.11196 kcal/mol |
63 74@LB@ | |@LB@5'-AUC...UCGGC UCGGC...UCC-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -16.8516 kcal/mol@LB@Unfolding Energy - mRNA 3.27707 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 64 -- 73@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 109 |
0.001808 |
0.07562 |
pa0202 |
N/A |
-7.70 |
0.456423 |
178 -- 185 |
75 -- 82 |
amidase |
pa4342 |
_____________177______186\n_____________|________|\n5'-CCC...CCUUC________CAAGG...UGC-3'\n______________UCGACUGC\n______________:|||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
179 -- 185 |
75 -- 81 |
-13.4138 kcal/mol |
1.61599 kcal/mol |
4.09516 kcal/mol |
177 186@LB@ | |@LB@5'-CCC...CCUUC CAAGG...UGC-3'@LB@ UCGACUGC@LB@ :|||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -13.4138 kcal/mol@LB@Unfolding Energy - mRNA 1.61599 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 178 -- 185@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 117 |
0.002052 |
0.07999 |
pa0290 |
N/A |
-8.56 |
0.333144 |
143 -- 150 |
40 -- 47 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________142______151\n_____________|________|\n5'-CCU...UAUCG________CCUGC...AAC-3'\n______________UCGCGACC\n______________||||||||\n______________AGCGCUGG\n3'-UUU...ACUAG________UCAAC...GUU-5'\n_____________|________|\n_____________48_______39\n |
144 -- 150 |
40 -- 46 |
-14.5279 kcal/mol |
2.30284 kcal/mol |
3.66533 kcal/mol |
142 151@LB@ | |@LB@5'-CCU...UAUCG CCUGC...AAC-3'@LB@ UCGCGACC@LB@ ||||||||@LB@ AGCGCUGG@LB@3'-UUU...ACUAG UCAAC...GUU-5'@LB@ | |@LB@ 48 39@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -14.5279 kcal/mol@LB@Unfolding Energy - mRNA 2.30284 kcal/mol@LB@Unfolding Energy - sRNA 3.66533 kcal/mol@LB@@LB@Position - mRNA 143 -- 150@LB@Position - sRNA 40 -- 47@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 40 -- 46@LB@ |
