| 74 |
0.0008152 |
0.04991 |
pa3942 |
tesB |
-9.59 |
0.215645 |
1 -- 36 |
40 -- 80 |
acyl-CoA thioesterase II |
|
______________1_________________________________________37\n______________|_________________________________________|\n___________5'-______C____A_______G__________CUA__A______CCCUG...AGC-3'\n______________GGCUGU_UGGG_____CGG__UAUCGGCUG___CU__CGACC\n______________|:|||:_||||_____|:|__||:||||||___||__|||||\n______________CUGACG_ACCC_____GUC__AUGGCCGAC___GA__GCUGG\n3'-UUU...UCAGG______C____AGAGA___GA_________UA___GC_____UCAAC...GUU-5'\n_____________|__________________________________________|\n_____________81_________________________________________39\n |
19 -- 25 |
51 -- 57 |
-37.7037 kcal/mol |
9.97985 kcal/mol |
18.133 kcal/mol |
1 37@LB@ | |@LB@ 5'- C A G CUA A CCCUG...AGC-3'@LB@ GGCUGU UGGG CGG UAUCGGCUG CU CGACC@LB@ |:|||: |||| |:| ||:|||||| || |||||@LB@ CUGACG ACCC GUC AUGGCCGAC GA GCUGG@LB@3'-UUU...UCAGG C AGAGA GA UA GC UCAAC...GUU-5'@LB@ | |@LB@ 81 39@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -37.7037 kcal/mol@LB@Unfolding Energy - mRNA 9.97985 kcal/mol@LB@Unfolding Energy - sRNA 18.133 kcal/mol@LB@@LB@Position - mRNA 1 -- 36@LB@Position - sRNA 40 -- 80@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 183 |
0.004788 |
0.1199 |
pa0638 |
N/A |
-13.00 |
0.036234 |
1 -- 21 |
40 -- 62 |
bacteriophage protein |
|
______________1______________________22\n______________|______________________|\n___________5'-__G____________________GAUCG...UCC-3'\n______________GC_UACCGGC_GAUCUCGCG_CU\n______________||_|||||||_|||||||||_|:\n______________CG_AUGGCCG_CUAGAGCGC_GG\n3'-UUU...AGAGU__A_______A_________U__UCAAC...GUU-5'\n_____________|_______________________|\n_____________63______________________39\n |
13 -- 19 |
43 -- 49 |
-33.0928 kcal/mol |
8.24856 kcal/mol |
11.8411 kcal/mol |
1 22@LB@ | |@LB@ 5'- G GAUCG...UCC-3'@LB@ GC UACCGGC GAUCUCGCG CU@LB@ || ||||||| ||||||||| |:@LB@ CG AUGGCCG CUAGAGCGC GG@LB@3'-UUU...AGAGU A A U UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -33.0928 kcal/mol@LB@Unfolding Energy - mRNA 8.24856 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 1 -- 21@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 124 |
0.002337 |
0.08662 |
pa3949 |
N/A |
-9.36 |
0.238904 |
5 -- 33 |
38 -- 61 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________4_____________________________34\n_____________|_____________________________|\n_______5'-UGGC_____GA_________AGU__C_______GCGCA...GCA-3'\n______________CUUGC__CGGUUGAUC___UC_UGACCAG\n______________|||:|__|||:|||||___||_:||||||\n______________GAAUG__GCCGACUAG___AG_GCUGGUC\n3'-UUU...GAGUC_____________________C_______AACUC...GUU-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
27 -- 33 |
38 -- 44 |
-29.1049 kcal/mol |
8.08568 kcal/mol |
11.6624 kcal/mol |
4 34@LB@ | |@LB@ 5'-UGGC GA AGU C GCGCA...GCA-3'@LB@ CUUGC CGGUUGAUC UC UGACCAG@LB@ |||:| |||:||||| || :||||||@LB@ GAAUG GCCGACUAG AG GCUGGUC@LB@3'-UUU...GAGUC C AACUC...GUU-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -29.1049 kcal/mol@LB@Unfolding Energy - mRNA 8.08568 kcal/mol@LB@Unfolding Energy - sRNA 11.6624 kcal/mol@LB@@LB@Position - mRNA 5 -- 33@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 125 |
0.002365 |
0.08694 |
pa4303 |
tadZ |
-11.60 |
0.080140 |
12 -- 30 |
101 -- 120 |
class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known). |
|
_____________11___________________31\n_____________|____________________|\n5'-UGG...AGGAC_____C__GCU_________UCGUC...GCG-3'\n______________GACCG_GA___G_CUGAUGA\n______________:||||_||___|_|||||||\n______________UUGGC_CU___C_GACUACU\n3'-UUU...AGUUU_____A__AAU_G_______CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
24 -- 30 |
101 -- 107 |
-18.3231 kcal/mol |
4.48403 kcal/mol |
2.2437 kcal/mol |
11 31@LB@ | |@LB@5'-UGG...AGGAC C GCU UCGUC...GCG-3'@LB@ GACCG GA G CUGAUGA@LB@ :|||| || | |||||||@LB@ UUGGC CU C GACUACU@LB@3'-UUU...AGUUU A AAU G CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -18.3231 kcal/mol@LB@Unfolding Energy - mRNA 4.48403 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 12 -- 30@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 162 |
0.00407 |
0.1155 |
pa4993 |
N/A |
-9.83 |
0.193366 |
13 -- 32 |
104 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12___________________33\n_____________|____________________|\n5'-CGA...CGCGC_____C___AAAA_______ACCAU...GCC-3'\n______________AAGCC_UGA____GGCCUGA\n______________||:||_|||____:||||||\n______________UUUGG_ACU____UCGGACU\n3'-UUU...CAGUU_____C___AA_________ACUCC...GUU-5'\n_____________|____________________|\n_____________122__________________103\n |
26 -- 32 |
104 -- 110 |
-17.5213 kcal/mol |
5.44748 kcal/mol |
2.24203 kcal/mol |
12 33@LB@ | |@LB@5'-CGA...CGCGC C AAAA ACCAU...GCC-3'@LB@ AAGCC UGA GGCCUGA@LB@ ||:|| ||| :||||||@LB@ UUUGG ACU UCGGACU@LB@3'-UUU...CAGUU C AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -17.5213 kcal/mol@LB@Unfolding Energy - mRNA 5.44748 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 41 |
0.000201 |
0.02253 |
pa1808 |
N/A |
-10.12 |
0.169236 |
14 -- 78 |
39 -- 99 |
ABC transporter permease |
|
_____________13__________________________________________________________________79\n_____________|___________________________________________________________________|\n5'-UUC...UGAUC__________UCUCCC______G__CUC__C__G________CGA_G____GA___A__________CCCGG...GCA-3'\n______________GAGGUGAUCU_______UCGAC_GC___GG_CU_CUCAGCUU___A_CGGC__UGA_C_CGCGACUA\n______________|||:|:||||_______:||||_||___||_||_||||||||___|_||||__|||_|_||||||:|\n______________CUCUAUUAGA_______GGCUG_CG___CC_GA_GAGUCGAA___U_GCCG__ACU_G_GCGCUGGU\n3'-UUU...UACUC__________CUUCUCA_____A__CAC__A_______________G_________A_A________CAACU...GUU-5'\n_____________|___________________________________________________________________|\n_____________100_________________________________________________________________38\n |
72 -- 78 |
39 -- 45 |
-56.2583 kcal/mol |
23.9789 kcal/mol |
22.1648 kcal/mol |
13 79@LB@ | |@LB@5'-UUC...UGAUC UCUCCC G CUC C G CGA G GA A CCCGG...GCA-3'@LB@ GAGGUGAUCU UCGAC GC GG CU CUCAGCUU A CGGC UGA C CGCGACUA@LB@ |||:|:|||| :|||| || || || |||||||| | |||| ||| | ||||||:|@LB@ CUCUAUUAGA GGCUG CG CC GA GAGUCGAA U GCCG ACU G GCGCUGGU@LB@3'-UUU...UACUC CUUCUCA A CAC A G A A CAACU...GUU-5'@LB@ | |@LB@ 100 38@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -56.2583 kcal/mol@LB@Unfolding Energy - mRNA 23.9789 kcal/mol@LB@Unfolding Energy - sRNA 22.1648 kcal/mol@LB@@LB@Position - mRNA 14 -- 78@LB@Position - sRNA 39 -- 99@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 33 |
8.454e-05 |
0.01177 |
pa3481 |
N/A |
-18.00 |
0.001084 |
15 -- 90 |
50 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________14_________________________________________________________________________________91\n_____________|__________________________________________________________________________________|\n5'-GUC...GAAUG______________G_A_________GCG_____UAACGAG___CU_______U__GGACAUGGGU________________GAGCU...AGG-3'\n______________GAACCGU___UGGC_U___GGGGAGG____CUGG_______GAU__UGCGUGG_UC__________UCGGCUUAUCGGCUGA\n______________:||||||___|:||_|___|:||||:____|||:_______||:__|||||||_||__________||:|||||:|||||||\n______________UUUGGCA___AUCG_A___CUCCUCU____GACU_______CUG__ACGCACC_AG__________AGUCGAAUGGCCGACU\n3'-UUU...CAGUU_______CUA____G_CUA_______AUUA____UCUCAGG____________C__AG________________________AGAGC...GUU-5'\n_____________|__________________________________________________________________________________|\n_____________122________________________________________________________________________________49\n |
84 -- 90 |
50 -- 56 |
-67.3131 kcal/mol |
26.9383 kcal/mol |
22.3832 kcal/mol |
14 91@LB@ | |@LB@5'-GUC...GAAUG G A GCG UAACGAG CU U GGACAUGGGU GAGCU...AGG-3'@LB@ GAACCGU UGGC U GGGGAGG CUGG GAU UGCGUGG UC UCGGCUUAUCGGCUGA@LB@ :|||||| |:|| | |:||||: |||: ||: ||||||| || ||:|||||:|||||||@LB@ UUUGGCA AUCG A CUCCUCU GACU CUG ACGCACC AG AGUCGAAUGGCCGACU@LB@3'-UUU...CAGUU CUA G CUA AUUA UCUCAGG C AG AGAGC...GUU-5'@LB@ | |@LB@ 122 49@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -67.3131 kcal/mol@LB@Unfolding Energy - mRNA 26.9383 kcal/mol@LB@Unfolding Energy - sRNA 22.3832 kcal/mol@LB@@LB@Position - mRNA 15 -- 90@LB@Position - sRNA 50 -- 121@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
