| 53 |
0.0004056 |
0.03518 |
pa1750 |
N/A |
-9.05 |
0.272805 |
157 -- 194 |
32 -- 72 |
phospho-2-dehydro-3-deoxyheptonate aldolase |
|
_____________156________________________________________195\n_____________|__________________________________________|\n5'-ACU...GCAGG___C___C____G_______GC___________U_A______ACCAC...CCC-3'\n______________GGG_CUC_CGGC__GCCGGC____C_CGUGACC_G_UUGAGU\n______________|||_|||_|:||__:|||||____|_||:||||_|_||||||\n______________CCC_GAG_GUCG__UGGCCG____G_GCGCUGG_C_AACUCA\n3'-UUU...ACGCA___A___A____AA______ACUA_A_______U________CUGUA...GUU-5'\n_____________|__________________________________________|\n_____________73_________________________________________31\n |
179 -- 185 |
40 -- 46 |
-44.8167 kcal/mol |
16.8729 kcal/mol |
18.8965 kcal/mol |
156 195@LB@ | |@LB@5'-ACU...GCAGG C C G GC U A ACCAC...CCC-3'@LB@ GGG CUC CGGC GCCGGC C CGUGACC G UUGAGU@LB@ ||| ||| |:|| :||||| | ||:|||| | ||||||@LB@ CCC GAG GUCG UGGCCG G GCGCUGG C AACUCA@LB@3'-UUU...ACGCA A A AA ACUA A U CUGUA...GUU-5'@LB@ | |@LB@ 73 31@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -44.8167 kcal/mol@LB@Unfolding Energy - mRNA 16.8729 kcal/mol@LB@Unfolding Energy - sRNA 18.8965 kcal/mol@LB@@LB@Position - mRNA 157 -- 194@LB@Position - sRNA 32 -- 72@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 188 |
0.00503 |
0.1227 |
pa1766 |
N/A |
-13.35 |
0.029524 |
230 -- 250 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________229___________________251\n_____________|_____________________|\n5'-CGA...GACCU_____C__AA___G_______CAUCA...ACC-3'\n______________GACCG_GA__GGC_UGAUGGG\n______________:||||_||__:||_|||||:|\n______________UUGGC_CU__UCG_ACUACUC\n3'-UUU...AGUUU_____A__AA___G_______CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
244 -- 250 |
100 -- 106 |
-24.1459 kcal/mol |
8.55357 kcal/mol |
2.24919 kcal/mol |
229 251@LB@ | |@LB@5'-CGA...GACCU C AA G CAUCA...ACC-3'@LB@ GACCG GA GGC UGAUGGG@LB@ :|||| || :|| |||||:|@LB@ UUGGC CU UCG ACUACUC@LB@3'-UUU...AGUUU A AA G CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -24.1459 kcal/mol@LB@Unfolding Energy - mRNA 8.55357 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 176 |
0.004483 |
0.1171 |
pa1774 |
crfX |
-11.59 |
0.080592 |
153 -- 172 |
96 -- 117 |
Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa |
|
_____________152______________________173\n_____________|________________________|\n5'-UGC...UCUGA_____________GA_________GGGCG...AGA-3'\n______________CGUGA____CCUG__GUGAGGAGA\n______________|||||____||||__:||||||||\n______________GCACU____GGAC__UACUCCUCU\n3'-UUU...UUUUG_____AAUC_______________AUUAG...GUU-5'\n_____________|________________________|\n_____________118______________________95\n |
166 -- 172 |
96 -- 102 |
-24.6679 kcal/mol |
7.55062 kcal/mol |
5.53547 kcal/mol |
152 173@LB@ | |@LB@5'-UGC...UCUGA GA GGGCG...AGA-3'@LB@ CGUGA CCUG GUGAGGAGA@LB@ ||||| |||| :||||||||@LB@ GCACU GGAC UACUCCUCU@LB@3'-UUU...UUUUG AAUC AUUAG...GUU-5'@LB@ | |@LB@ 118 95@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -24.6679 kcal/mol@LB@Unfolding Energy - mRNA 7.55062 kcal/mol@LB@Unfolding Energy - sRNA 5.53547 kcal/mol@LB@@LB@Position - mRNA 153 -- 172@LB@Position - sRNA 96 -- 117@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 47 |
0.0003012 |
0.02946 |
pa1776 |
sigX |
-11.73 |
0.074706 |
90 -- 102 |
103 -- 115 |
RNA polymerase sigma factor SigX |
|
_____________89____________103\n_____________|_____________|\n5'-CGU...CGAUA___C_________CUCAC...UGU-3'\n______________UGA_UGGCCUGAU\n______________|||_|:|||||||\n______________ACU_AUCGGACUA\n3'-UUU...UUGGC___A_________CUCCU...GUU-5'\n_____________|_____________|\n_____________116___________102\n |
96 -- 102 |
103 -- 109 |
-16.1519 kcal/mol |
2.30076 kcal/mol |
2.12156 kcal/mol |
89 103@LB@ | |@LB@5'-CGU...CGAUA C CUCAC...UGU-3'@LB@ UGA UGGCCUGAU@LB@ ||| |:|||||||@LB@ ACU AUCGGACUA@LB@3'-UUU...UUGGC A CUCCU...GUU-5'@LB@ | |@LB@ 116 102@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.1519 kcal/mol@LB@Unfolding Energy - mRNA 2.30076 kcal/mol@LB@Unfolding Energy - sRNA 2.12156 kcal/mol@LB@@LB@Position - mRNA 90 -- 102@LB@Position - sRNA 103 -- 115@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 21 |
5.061e-05 |
0.01105 |
pa1778 |
cobA |
-17.87 |
0.001208 |
184 -- 227 |
69 -- 109 |
uroporphyrin-III C-methyltransferase |
|
_____________183____________________________________________228\n_____________|______________________________________________|\n5'-GGU...CGAAU______G___AAC__C_____GCG_U____________________GCGGG...UGG-3'\n______________GCCUGA_GAG___GA_GAUGA___G_AAG_GUCUGGCUG_GUGGGU\n______________||||||_|||___||_|||:|___|_|||_|||:|:|||_||||||\n______________CGGACU_CUC___CU_CUAUU___C_UUC_CAGGCUGAC_CACCCA\n3'-UUU...CUAAU______A______________AGA_____U_________G______GAGAG...GUU-5'\n_____________|______________________________________________|\n_____________110____________________________________________68\n |
215 -- 221 |
76 -- 82 |
-46.3721 kcal/mol |
15.5624 kcal/mol |
12.9463 kcal/mol |
183 228@LB@ | |@LB@5'-GGU...CGAAU G AAC C GCG U GCGGG...UGG-3'@LB@ GCCUGA GAG GA GAUGA G AAG GUCUGGCUG GUGGGU@LB@ |||||| ||| || |||:| | ||| |||:|:||| ||||||@LB@ CGGACU CUC CU CUAUU C UUC CAGGCUGAC CACCCA@LB@3'-UUU...CUAAU A AGA U G GAGAG...GUU-5'@LB@ | |@LB@ 110 68@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -46.3721 kcal/mol@LB@Unfolding Energy - mRNA 15.5624 kcal/mol@LB@Unfolding Energy - sRNA 12.9463 kcal/mol@LB@@LB@Position - mRNA 184 -- 227@LB@Position - sRNA 69 -- 109@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 101 |
0.001673 |
0.07499 |
pa1787 |
acnB |
-10.32 |
0.154094 |
277 -- 296 |
100 -- 121 |
aconitate hydratase B |
|
_____________276_____________________297\n_____________|_______________________|\n5'-UAC...CGAAC______CA___________C___CUGC-3'\n______________AGACCG_____GGCCUGGU_GAG\n______________|:||||_____:|||||:|_|||\n______________UUUGGC_____UCGGACUA_CUC\n3'-UUU...CAGUU______ACUAA____________CUCUA...GUU-5'\n_____________|_______________________|\n_____________122_____________________99\n |
286 -- 292 |
103 -- 109 |
-20.0253 kcal/mol |
7.46245 kcal/mol |
2.24936 kcal/mol |
276 297@LB@ | |@LB@5'-UAC...CGAAC CA C CUGC-3'@LB@ AGACCG GGCCUGGU GAG@LB@ |:|||| :|||||:| |||@LB@ UUUGGC UCGGACUA CUC@LB@3'-UUU...CAGUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 122 99@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -20.0253 kcal/mol@LB@Unfolding Energy - mRNA 7.46245 kcal/mol@LB@Unfolding Energy - sRNA 2.24936 kcal/mol@LB@@LB@Position - mRNA 277 -- 296@LB@Position - sRNA 100 -- 121@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 41 |
0.000201 |
0.02253 |
pa1808 |
N/A |
-10.12 |
0.169236 |
14 -- 78 |
39 -- 99 |
ABC transporter permease |
|
_____________13__________________________________________________________________79\n_____________|___________________________________________________________________|\n5'-UUC...UGAUC__________UCUCCC______G__CUC__C__G________CGA_G____GA___A__________CCCGG...GCA-3'\n______________GAGGUGAUCU_______UCGAC_GC___GG_CU_CUCAGCUU___A_CGGC__UGA_C_CGCGACUA\n______________|||:|:||||_______:||||_||___||_||_||||||||___|_||||__|||_|_||||||:|\n______________CUCUAUUAGA_______GGCUG_CG___CC_GA_GAGUCGAA___U_GCCG__ACU_G_GCGCUGGU\n3'-UUU...UACUC__________CUUCUCA_____A__CAC__A_______________G_________A_A________CAACU...GUU-5'\n_____________|___________________________________________________________________|\n_____________100_________________________________________________________________38\n |
72 -- 78 |
39 -- 45 |
-56.2583 kcal/mol |
23.9789 kcal/mol |
22.1648 kcal/mol |
13 79@LB@ | |@LB@5'-UUC...UGAUC UCUCCC G CUC C G CGA G GA A CCCGG...GCA-3'@LB@ GAGGUGAUCU UCGAC GC GG CU CUCAGCUU A CGGC UGA C CGCGACUA@LB@ |||:|:|||| :|||| || || || |||||||| | |||| ||| | ||||||:|@LB@ CUCUAUUAGA GGCUG CG CC GA GAGUCGAA U GCCG ACU G GCGCUGGU@LB@3'-UUU...UACUC CUUCUCA A CAC A G A A CAACU...GUU-5'@LB@ | |@LB@ 100 38@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -56.2583 kcal/mol@LB@Unfolding Energy - mRNA 23.9789 kcal/mol@LB@Unfolding Energy - sRNA 22.1648 kcal/mol@LB@@LB@Position - mRNA 14 -- 78@LB@Position - sRNA 39 -- 99@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 143 |
0.003113 |
0.1001 |
pa1811 |
N/A |
-11.02 |
0.108661 |
233 -- 245 |
105 -- 120 |
solute-binding protein |
|
_____________232______________246\n_____________|________________|\n5'-GAG...GGCCU________________CCCAG...UCA-3'\n______________GGCCGUGA___GCCUG\n______________::||||||___|||||\n______________UUGGCACU___CGGAC\n3'-UUU...AGUUU________AAU_____UACUC...GUU-5'\n_____________|________________|\n_____________121______________104\n |
234 -- 240 |
113 -- 119 |
-18.7383 kcal/mol |
5.48096 kcal/mol |
2.24173 kcal/mol |
232 246@LB@ | |@LB@5'-GAG...GGCCU CCCAG...UCA-3'@LB@ GGCCGUGA GCCUG@LB@ ::|||||| |||||@LB@ UUGGCACU CGGAC@LB@3'-UUU...AGUUU AAU UACUC...GUU-5'@LB@ | |@LB@ 121 104@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -18.7383 kcal/mol@LB@Unfolding Energy - mRNA 5.48096 kcal/mol@LB@Unfolding Energy - sRNA 2.24173 kcal/mol@LB@@LB@Position - mRNA 233 -- 245@LB@Position - sRNA 105 -- 120@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 192 |
0.005234 |
0.1243 |
pa1840 |
N/A |
-6.31 |
0.681723 |
125 -- 149 |
99 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________124_________________________150\n_____________|___________________________|\n5'-GCA...GCGCC_______GC_______G_____G____UCUUG...ACG-3'\n______________GAGAUCG__GA__GGC_CUGGU_GAGG\n______________:|:|:||__||__:||_|||:|_||||\n______________UUUUGGC__CU__UCG_GACUA_CUCC\n3'-UUU...CCAGU_______A___AA______________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
125 -- 131 |
116 -- 122 |
-20.2979 kcal/mol |
11.7389 kcal/mol |
2.25034 kcal/mol |
124 150@LB@ | |@LB@5'-GCA...GCGCC GC G G UCUUG...ACG-3'@LB@ GAGAUCG GA GGC CUGGU GAGG@LB@ :|:|:|| || :|| |||:| ||||@LB@ UUUUGGC CU UCG GACUA CUCC@LB@3'-UUU...CCAGU A AA UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -6.31 kcal/mol@LB@Hybridization Energy -20.2979 kcal/mol@LB@Unfolding Energy - mRNA 11.7389 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 125 -- 149@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 116 -- 122@LB@ |
