Annotation Cluster 1 Enrichment Score: 3.74682738436 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0051536~iron-sulfur cluster binding 14 7.21649484536 0.000179131769361 879274,880124,880159,881816,881848,883008,880945,882827,879069,879984,880629,877574,881221,880230 119 91 2586 3.3432449903 0.0391624844586 0.0197768032017 0.228280359334 GOTERM_MF_FAT GO:0051540~metal cluster binding 14 7.21649484536 0.000179131769361 879274,880124,880159,881816,881848,883008,880945,882827,879069,879984,880629,877574,881221,880230 119 91 2586 3.3432449903 0.0391624844586 0.0197768032017 0.228280359334 Annotation Cluster 2 Enrichment Score: 3.00969368206 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS branched-chain amino acid biosynthesis 5 2.57731958763 0.000116718499483 882827,881423,879274,880337,882818 194 8 5175 16.6720360825 0.0152896491781 0.00512274745624 0.136208939517 GOTERM_BP_FAT GO:0009082~branched chain family amino acid biosynthetic process 5 2.57731958763 0.00140754171396 882827,881423,879274,880337,882818 106 12 2352 9.24528301887 0.363734383773 0.20233740452 1.88366884435 GOTERM_BP_FAT GO:0009081~branched chain family amino acid metabolic process 5 2.57731958763 0.00569269588598 882827,881423,879274,880337,882818 106 17 2352 6.52608213097 0.839999204656 0.263193089841 7.41802113199 Annotation Cluster 3 Enrichment Score: 2.86216762915 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS 4fe-4s 7 3.60824742268 0.00118764024898 882827,879274,879069,880159,879984,880629,880230 194 33 5175 5.65838800375 0.14517770943 0.0384564486216 1.37806493967 GOTERM_MF_FAT GO:0051539~4 iron,4 sulfur cluster binding 9 4.63917525773 0.00158847298912 882827,879274,879069,880159,880124,879984,880629,881816,880230 119 50 2586 3.91159663866 0.298483681099 0.0848138385013 2.00762130447 Annotation Cluster 4 Enrichment Score: 2.63095494421 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS electron transport 7 3.60824742268 0.00190314777177 880159,877732,881604,880944,879562,880945,880230 194 36 5175 5.1868556701 0.222331439007 0.0490473163105 2.19989137166 GOTERM_BP_FAT GO:0022900~electron transport chain 9 4.63917525773 0.00287486596101 880159,879377,877732,878803,881604,880944,879562,880945,880230 106 56 2352 3.56603773585 0.603135763547 0.206292487378 3.81232514732 Annotation Cluster 5 Enrichment Score: 2.28160487735 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR INTERPRO IPR015937:Aconitase-like core 4 2.0618556701 0.000590102750502 882827,879984,882027,882818 181 5 4508 19.9248618785 0.213563038505 0.213563038505 0.822003061358 INTERPRO IPR015928:Aconitase/3-isopropylmalate dehydratase,swivel 3 1.54639175258 0.00902115185756 879984,882027,882818 181 4 4508 18.679558011 0.974984762882 0.70753883344 11.901759941 INTERPRO IPR001030:Aconitase/3-isopropylmalate dehydratase large subunit,alpha/beta/alpha 3 1.54639175258 0.00902115185756 882827,879984,882027 181 4 4508 18.679558011 0.974984762882 0.70753883344 11.901759941 INTERPRO IPR015931:Aconitase/3-isopropylmalate dehydratase large subunit,alpha/beta/alpha,subdomain 1/3 3 1.54639175258 0.00902115185756 882827,879984,882027 181 4 4508 18.679558011 0.974984762882 0.70753883344 11.901759941 INTERPRO IPR015932:Aconitase/3-isopropylmalate dehydratase large subunit,alpha/beta/alpha,subdomain 2 3 1.54639175258 0.00902115185756 882827,879984,882027 181 4 4508 18.679558011 0.974984762882 0.70753883344 11.901759941 Annotation Cluster 6 Enrichment Score: 2.23749104308 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS amino-acid biosynthesis 10 5.15463917526 0.00207913318829 881743,882827,877658,878019,879575,879479,881423,879274,880337,882818 194 77 5175 3.46431918597 0.240223738181 0.044756069871 2.40106501492 GOTERM_BP_FAT GO:0009309~amine biosynthetic process 14 7.21649484536 0.00283683783465 878019,879479,879575,879274,880337,882818,882827,881743,877658,881423,882053,881222,881747,881221 106 124 2352 2.50517346318 0.598247495568 0.262119221018 3.76278714569 GOTERM_BP_FAT GO:0008652~cellular amino acid biosynthetic process 13 6.70103092784 0.00345114597646 881743,882827,877658,878019,879575,879479,881423,879274,882053,880337,881222,881221,882818 106 112 2352 2.57547169811 0.670353327865 0.199042007992 4.56014225244 GOTERM_BP_FAT GO:0046394~carboxylic acid biosynthetic process 14 7.21649484536 0.0174221350128 878019,879479,879575,879274,880337,882818,882827,881743,877658,881423,882053,881222,881221,880433 106 154 2352 2.01715265866 0.996453504553 0.506002301224 21.1234522868 GOTERM_BP_FAT GO:0016053~organic acid biosynthetic process 14 7.21649484536 0.0183131586919 878019,879479,879575,879274,880337,882818,882827,881743,877658,881423,882053,881222,881221,880433 106 155 2352 2.00413877054 0.997349527717 0.482747515688 22.083671568 Annotation Cluster 7 Enrichment Score: 1.82133244588 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pap00290:Valine,leucine and isoleucine biosynthesis 5 2.57731958763 0.00759840678035 882827,881423,879274,881326,882818 81 15 1437 5.91358024691 0.79221447882 0.544165028569 9.15945129301 KEGG_PATHWAY pag00290:Valine,leucine and isoleucine biosynthesis 5 2.57731958763 0.0121653491434 882827,881423,879274,881326,882818 81 17 1437 5.21786492375 0.919655388393 0.568495245591 14.2862965046 KEGG_PATHWAY pau00290:Valine,leucine and isoleucine biosynthesis 5 2.57731958763 0.0121653491434 882827,881423,879274,881326,882818 81 17 1437 5.21786492375 0.919655388393 0.568495245591 14.2862965046 KEGG_PATHWAY pae00290:Valine,leucine and isoleucine biosynthesis 5 2.57731958763 0.046099744827 882827,881423,879274,881326,882818 81 25 1437 3.54814814815 0.999940074622 0.856938703517 44.8116046072 Annotation Cluster 8 Enrichment Score: 1.81570232475 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0046914~transition metal ion binding 29 14.9484536082 0.00164258219116 881830,877792,879274,880124,881554,881397,881816,879562,880369,881743,879377,879984,880629,877732,881747,877893,882368,880230,879575,882811,878483,880159,882911,880945,882827,883010,879147,880561,882968 119 352 2586 1.79034568373 0.306911092221 0.070696035946 2.07534937339 GOTERM_MF_FAT GO:0046872~metal ion binding 30 15.4639175258 0.0266440568496 881830,877792,879274,880124,880858,881554,881397,881816,879562,880369,881743,879377,879984,880629,877732,881747,877893,882368,880230,879575,882811,878483,880159,882911,880945,882827,883010,879147,880561,882968 119 449 2586 1.4519660871 0.997575703444 0.576971729193 29.1434043991 GOTERM_MF_FAT GO:0043169~cation binding 30 15.4639175258 0.0348641776931 881830,877792,879274,880124,880858,881554,881397,881816,879562,880369,881743,879377,879984,880629,877732,881747,877893,882368,880230,879575,882811,878483,880159,882911,880945,882827,883010,879147,880561,882968 119 459 2586 1.42033283902 0.999634219052 0.628120160251 36.4094525803 GOTERM_MF_FAT GO:0043167~ion binding 30 15.4639175258 0.0357835820836 881830,877792,879274,880124,880858,881554,881397,881816,879562,880369,881743,879377,879984,880629,877732,881747,877893,882368,880230,879575,882811,878483,880159,882911,880945,882827,883010,879147,880561,882968 119 460 2586 1.41724515893 0.999704254317 0.594603659768 37.1779339621 Annotation Cluster 9 Enrichment Score: 1.42155979626 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR INTERPRO IPR000583:Glutamine amidotransferase,class-II 3 1.54639175258 0.0378826371079 877797,881545,881222 181 8 4508 9.33977900552 0.999999850783 0.927171246567 41.7262005128 INTERPRO IPR017932:Glutamine amidotransferase,type II 3 1.54639175258 0.0378826371079 877797,881545,881222 181 8 4508 9.33977900552 0.999999850783 0.927171246567 41.7262005128 Annotation Cluster 10 Enrichment Score: 1.25991002718 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR INTERPRO IPR001327:Pyridine nucleotide-disulphide oxidoreductase,NAD-binding region 4 2.0618556701 0.0281724586583 878460,882090,877574,881221 181 17 4508 5.86025349366 0.99999111197 0.945398902254 32.9410919602 INTERPRO IPR013027:FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4 2.0618556701 0.107239602461 878460,882090,877574,881221 181 29 4508 3.43532101353 1.0 0.994082701682 79.5302250019 Annotation Cluster 11 Enrichment Score: 1.02667781919 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0020037~heme binding 6 3.09278350515 0.0857090809044 877792,878483,883010,879377,881554,877732 119 52 2586 2.50743374273 0.999999997902 0.784995330226 68.1177874164 GOTERM_MF_FAT GO:0046906~tetrapyrrole binding 6 3.09278350515 0.10318522693 877792,878483,883010,879377,881554,877732 119 55 2586 2.37066462949 0.999999999972 0.823549686643 75.0757232016 Annotation Cluster 12 Enrichment Score: 0.917500746871 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0009084~glutamine family amino acid biosynthetic process 4 2.0618556701 0.0886743522022 881743,879575,881222,881221 106 24 2352 3.69811320755 1.0 0.916580302269 71.453012032 KEGG_PATHWAY pap00250:Alanine,aspartate and glutamate metabolism 4 2.0618556701 0.0956640530338 881743,877797,881222,881221 81 20 1437 3.54814814815 0.999999998991 0.948138123168 71.816778152 KEGG_PATHWAY pae00250:Alanine,aspartate and glutamate metabolism 5 2.57731958763 0.116192582833 881743,877797,877574,881222,881221 81 34 1437 2.60893246187 0.999999999991 0.958436770943 78.8945198555 KEGG_PATHWAY pag00250:Alanine,aspartate and glutamate metabolism 4 2.0618556701 0.132127955003 881743,877797,881222,881221 81 23 1437 3.08534621578 1.0 0.946025651281 83.2168557819 KEGG_PATHWAY pau00250:Alanine,aspartate and glutamate metabolism 4 2.0618556701 0.132127955003 881743,877797,881222,881221 81 23 1437 3.08534621578 1.0 0.946025651281 83.2168557819 GOTERM_BP_FAT GO:0009064~glutamine family amino acid metabolic process 5 2.57731958763 0.181669024912 881743,879575,877797,881222,881221 106 50 2352 2.21886792453 1.0 0.982088256314 93.3247174132 Annotation Cluster 13 Enrichment Score: 0.819589703844 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pau00020:Citrate cycle (TCA cycle) 4 2.0618556701 0.119472475874 881880,882090,879984,881326 81 22 1437 3.22558922559 0.999999999996 0.945646539235 79.8600383583 KEGG_PATHWAY pag00020:Citrate cycle (TCA cycle) 4 2.0618556701 0.119472475874 881880,882090,879984,881326 81 22 1437 3.22558922559 0.999999999996 0.945646539235 79.8600383583 KEGG_PATHWAY pap00020:Citrate cycle (TCA cycle) 3 1.54639175258 0.243610027497 881880,879984,881326 81 17 1437 3.13071895425 1.0 0.983562698962 97.0293618496 Annotation Cluster 14 Enrichment Score: 0.803374034408 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0030554~adenyl nucleotide binding 31 15.9793814433 0.0730606343316 882923,881653,879858,881631,881816,878756,878730,881743,879198,877800,880415,878647,878890,881221,880078,878460,877712,880057,880663,880980,877658,879303,882170,880118,882090,878282,878078,877574,880547,882387,878095 119 510 2586 1.32090954029 0.999999955079 0.78519690962 62.0100022476 GOTERM_MF_FAT GO:0001883~purine nucleoside binding 31 15.9793814433 0.0730606343316 882923,881653,879858,881631,881816,878756,878730,881743,879198,877800,880415,878647,878890,881221,880078,878460,877712,880057,880663,880980,877658,879303,882170,880118,882090,878282,878078,877574,880547,882387,878095 119 510 2586 1.32090954029 0.999999955079 0.78519690962 62.0100022476 GOTERM_MF_FAT GO:0001882~nucleoside binding 31 15.9793814433 0.0778323787908 882923,881653,879858,881631,881816,878756,878730,881743,879198,877800,880415,878647,878890,881221,880078,878460,877712,880057,880663,880980,877658,879303,882170,880118,882090,878282,878078,877574,880547,882387,878095 119 513 2586 1.31318492309 0.99999998579 0.778154781586 64.4307510757 GOTERM_MF_FAT GO:0017076~purine nucleotide binding 31 15.9793814433 0.130866560388 882923,881653,879858,881631,881816,878756,878730,881743,879198,877800,880415,878647,878890,881221,880078,878460,877712,880057,880663,880980,877658,879303,882170,880118,882090,878282,878078,877574,880547,882387,878095 119 540 2586 1.24752567694 1.0 0.875715005041 83.292262595 GOTERM_MF_FAT GO:0000166~nucleotide binding 34 17.5257731959 0.173099151142 882923,880220,881653,879858,881631,881816,878756,878730,881743,879198,880415,877800,878647,878890,881221,880433,880078,878460,877712,880057,880663,880337,880980,877658,879303,882170,880118,882090,878282,878078,877574,880547,882387,878095 119 619 2586 1.19363027925 1.0 0.892560486625 91.150021303 GOTERM_MF_FAT GO:0005524~ATP binding 24 12.3711340206 0.225875364088 880078,882923,877712,881653,880057,880663,880980,878730,878756,877658,881743,879198,879303,882170,880118,877800,880415,878282,878078,880547,878647,878890,882387,878095 119 429 2586 1.21572545102 1.0 0.9253642784 96.1845539797 GOTERM_MF_FAT GO:0032559~adenyl ribonucleotide binding 24 12.3711340206 0.229447152086 880078,882923,877712,881653,880057,880663,880980,878730,878756,877658,881743,879198,879303,882170,880118,877800,880415,878282,878078,880547,878647,878890,882387,878095 119 430 2586 1.21289818253 1.0 0.920113069704 96.4031433504 GOTERM_MF_FAT GO:0032553~ribonucleotide binding 24 12.3711340206 0.347308708484 880078,882923,877712,881653,880057,880663,880980,878730,878756,877658,881743,879198,879303,882170,880118,877800,880415,878282,878078,880547,878647,878890,882387,878095 119 460 2586 1.13379612715 1.0 0.974250831461 99.5672846354 GOTERM_MF_FAT GO:0032555~purine ribonucleotide binding 24 12.3711340206 0.347308708484 880078,882923,877712,881653,880057,880663,880980,878730,878756,877658,881743,879198,879303,882170,880118,877800,880415,878282,878078,880547,878647,878890,882387,878095 119 460 2586 1.13379612715 1.0 0.974250831461 99.5672846354 Annotation Cluster 15 Enrichment Score: 0.730232896505 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pag00190:Oxidative phosphorylation 5 2.57731958763 0.156919359622 878460,878510,881880,879044,881604 81 38 1437 2.3343079922 1.0 0.959099300879 88.349349309 KEGG_PATHWAY pau00190:Oxidative phosphorylation 5 2.57731958763 0.156919359622 878460,878510,881880,879044,881604 81 38 1437 2.3343079922 1.0 0.959099300879 88.349349309 KEGG_PATHWAY pap00190:Oxidative phosphorylation 4 2.0618556701 0.261787108481 878460,878510,881880,881604 81 32 1437 2.21759259259 1.0 0.984522731469 97.8132530782 Annotation Cluster 16 Enrichment Score: 0.72063626561 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0046164~alcohol catabolic process 5 2.57731958763 0.0678743685341 882477,879198,879147,882090,881326 106 35 2352 3.16981132075 0.999999999841 0.89525583115 61.2849398655 GOTERM_BP_FAT GO:0016052~carbohydrate catabolic process 5 2.57731958763 0.0800661164501 878578,882477,879198,882090,881326 106 37 2352 2.99847016828 0.999999999998 0.912430647461 67.5895950834 GOTERM_BP_FAT GO:0046365~monosaccharide catabolic process 4 2.0618556701 0.116579172149 882477,879198,882090,881326 106 27 2352 3.28721174004 1.0 0.953145138543 81.2406094912 GOTERM_BP_FAT GO:0006007~glucose catabolic process 4 2.0618556701 0.116579172149 882477,879198,882090,881326 106 27 2352 3.28721174004 1.0 0.953145138543 81.2406094912 GOTERM_BP_FAT GO:0019320~hexose catabolic process 4 2.0618556701 0.116579172149 882477,879198,882090,881326 106 27 2352 3.28721174004 1.0 0.953145138543 81.2406094912 SP_PIR_KEYWORDS glycolysis 3 1.54639175258 0.117988262731 879198,882090,881326 194 16 5175 5.00161082474 0.999999936523 0.778337425048 76.9167750052 GOTERM_BP_FAT GO:0044275~cellular carbohydrate catabolic process 4 2.0618556701 0.147312875357 882477,879198,882090,881326 106 30 2352 2.95849056604 1.0 0.97411150438 88.3693491221 GOTERM_BP_FAT GO:0006096~glycolysis 3 1.54639175258 0.206988009375 879198,882090,881326 106 19 2352 3.50347567031 1.0 0.980122674475 95.6328940747 GOTERM_BP_FAT GO:0006006~glucose metabolic process 4 2.0618556701 0.263566334936 882477,879198,882090,881326 106 40 2352 2.21886792453 1.0 0.983292466229 98.3923384599 GOTERM_BP_FAT GO:0019318~hexose metabolic process 4 2.0618556701 0.288276891456 882477,879198,882090,881326 106 42 2352 2.11320754717 1.0 0.987303789939 98.9859070441 KEGG_PATHWAY pag00010:Glycolysis / Gluconeogenesis 3 1.54639175258 0.349055847252 879198,882090,881326 81 22 1437 2.41919191919 1.0 0.996024648578 99.5516105776 KEGG_PATHWAY pau00010:Glycolysis / Gluconeogenesis 3 1.54639175258 0.369715646513 879198,882090,881326 81 23 1437 2.31400966184 1.0 0.996277331408 99.7012966881 GOTERM_BP_FAT GO:0005996~monosaccharide metabolic process 4 2.0618556701 0.41239140962 882477,879198,882090,881326 106 52 2352 1.70682148041 1.0 0.995936082393 99.9237043709 KEGG_PATHWAY pae00010:Glycolysis / Gluconeogenesis 3 1.54639175258 0.65054596513 879198,882090,881326 81 39 1437 1.36467236467 1.0 0.999918648954 99.9998225098 Annotation Cluster 17 Enrichment Score: 0.719049866364 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pag00630:Glyoxylate and dicarboxylate metabolism 3 1.54639175258 0.180908047145 880124,879984,881631 81 14 1437 3.80158730159 1.0 0.967475498395 91.9004974686 KEGG_PATHWAY pau00630:Glyoxylate and dicarboxylate metabolism 3 1.54639175258 0.201577651781 880124,879984,881631 81 15 1437 3.54814814815 1.0 0.971766541669 94.1297248862 Annotation Cluster 18 Enrichment Score: 0.715234506602 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SMART SM00388:HisKA 5 2.57731958763 0.105414803617 880078,878756,879303,878647,878890 30 51 803 2.62418300654 0.955801472475 0.955801472475 60.6191761225 GOTERM_MF_FAT GO:0004672~protein kinase activity 7 3.60824742268 0.13641014793 880078,878756,880764,879303,880057,878647,878890 119 77 2586 1.97555385791 1.0 0.853948956957 84.6019239222 INTERPRO IPR003661:Signal transduction histidine kinase,subgroup 1,dimerisation and phosphoacceptor region 5 2.57731958763 0.144777020966 880078,878756,879303,878647,878890 181 51 4508 2.44177228903 1.0 0.996931427609 88.773421686 INTERPRO IPR004358:Signal transduction histidine kinase-related protein,C-terminal 5 2.57731958763 0.152264870611 880078,878756,879303,878647,878890 181 52 4508 2.39481512962 1.0 0.9963117152 90.0724342651 SMART SM00387:HATPase_c 5 2.57731958763 0.186326281165 880078,878756,879303,878647,878890 30 63 803 2.12433862434 0.996891090459 0.944242403736 82.181970012 INTERPRO IPR005467:Signal transduction histidine kinase,core 5 2.57731958763 0.191746480087 880078,878756,879303,878647,878890 181 57 4508 2.18474362702 1.0 0.998724945194 94.9041897885 GOTERM_MF_FAT GO:0004673~protein histidine kinase activity 6 3.09278350515 0.204524589033 880078,878756,880764,879303,878647,878890 119 69 2586 1.88966021191 1.0 0.911945647314 94.6013895197 GOTERM_MF_FAT GO:0000155~two-component sensor activity 6 3.09278350515 0.204524589033 880078,878756,880764,879303,878647,878890 119 69 2586 1.88966021191 1.0 0.911945647314 94.6013895197 GOTERM_MF_FAT GO:0016775~phosphotransferase activity,nitrogenous group as acceptor 6 3.09278350515 0.229641030338 880078,878756,880764,879303,878647,878890 119 72 2586 1.81092436975 1.0 0.91144961381 96.4146715301 INTERPRO IPR003594:ATP-binding region,ATPase-like 5 2.57731958763 0.242766088496 880078,878756,879303,878647,878890 181 63 4508 1.9766728054 1.0 0.999471422317 97.9524179339 GOTERM_BP_FAT GO:0018202~peptidyl-histidine modification 5 2.57731958763 0.248333034186 880078,878756,879303,878647,878890 106 57 2352 1.94637537239 1.0 0.981389986084 97.8804597786 GOTERM_BP_FAT GO:0018106~peptidyl-histidine phosphorylation 5 2.57731958763 0.248333034186 880078,878756,879303,878647,878890 106 57 2352 1.94637537239 1.0 0.981389986084 97.8804597786 GOTERM_BP_FAT GO:0006468~protein amino acid phosphorylation 5 2.57731958763 0.309104057032 880078,878756,879303,878647,878890 106 63 2352 1.76100628931 1.0 0.989592084011 99.3208926787 Annotation Cluster 19 Enrichment Score: 0.680073506781 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0045333~cellular respiration 5 2.57731958763 0.190803820137 880124,881880,879984,878803,880944 106 51 2352 2.17536071032 1.0 0.981641387711 94.2634485313 GOTERM_BP_FAT GO:0015980~energy derivation by oxidation of organic compounds 5 2.57731958763 0.228699871638 880124,881880,879984,878803,880944 106 55 2352 2.01715265866 1.0 0.984514129313 96.9979144392 Annotation Cluster 20 Enrichment Score: 0.558203755012 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0033554~cellular response to stress 6 3.09278350515 0.154455719924 880369,880581,879069,880415,881653,881554 106 64 2352 2.08018867925 1.0 0.972412139713 89.6180054924 GOTERM_BP_FAT GO:0006974~response to DNA damage stimulus 5 2.57731958763 0.238467010424 880369,880581,879069,880415,881653 106 56 2352 1.98113207547 1.0 0.98121847322 97.4724468252 GOTERM_BP_FAT GO:0006281~DNA repair 5 2.57731958763 0.238467010424 880369,880581,879069,880415,881653 106 56 2352 1.98113207547 1.0 0.98121847322 97.4724468252 GOTERM_MF_FAT GO:0004518~nuclease activity 4 2.0618556701 0.388831071685 880369,880581,879069,881653 119 49 2586 1.77396672955 1.0 0.974268481517 99.8129188384 GOTERM_BP_FAT GO:0006259~DNA metabolic process 6 3.09278350515 0.473761376917 880369,880581,879069,880415,881653,882426 106 101 2352 1.31813936111 1.0 0.998059702722 99.9827917351 Annotation Cluster 21 Enrichment Score: 0.507522266027 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0016310~phosphorylation 7 3.60824742268 0.232816204962 880078,878756,881393,879303,878510,878647,878890 106 93 2352 1.67011564212 1.0 0.982597748843 97.2071514638 GOTERM_BP_FAT GO:0006796~phosphate metabolic process 7 3.60824742268 0.351006978152 880078,878756,881393,879303,878510,878647,878890 106 108 2352 1.43815513627 1.0 0.994142092019 99.708199705 GOTERM_BP_FAT GO:0006793~phosphorus metabolic process 7 3.60824742268 0.367370471557 880078,878756,881393,879303,878510,878647,878890 106 110 2352 1.41200686106 1.0 0.994748049983 99.7932936002 Annotation Cluster 22 Enrichment Score: 0.48057381747 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0050662~coenzyme binding 12 6.18556701031 0.2042364348 882477,881319,878460,882090,880337,879141,877574,881631,879858,881816,881221,880433 119 182 2586 1.43281928156 1.0 0.921703533116 94.5763884567 GOTERM_MF_FAT GO:0048037~cofactor binding 14 7.21649484536 0.535450273021 882477,879918,878460,881319,882090,880337,879141,877574,879858,881631,881816,881221,880433,882492 119 283 2586 1.07503637497 1.0 0.995974868388 99.9943469296 Annotation Cluster 23 Enrichment Score: 0.417651637235 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS atp-binding 16 8.24742268041 0.328751381603 882923,881653,880663,880980,878730,878756,881743,879198,882170,880118,877800,880415,878078,878647,880547,878095 194 351 5175 1.21596616442 1.0 0.962693192198 99.0483151237 SP_PIR_KEYWORDS nucleotide-binding 16 8.24742268041 0.444456374025 882923,881653,880663,880980,878730,878756,881743,879198,882170,880118,877800,880415,878078,878647,880547,878095 194 379 5175 1.12613225254 1.0 0.986574414337 99.8955187998 Annotation Cluster 24 Enrichment Score: 0.380646386007 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SMART SM00342:HTH_ARAC 4 2.0618556701 0.34986895036 882070,877874,881137,882822 30 58 803 1.84597701149 0.999994192016 0.982024741627 97.273323539 INTERPRO IPR000005:Helix-turn-helix,AraC type 4 2.0618556701 0.399458729109 882070,877874,881137,882822 181 57 4508 1.74779490162 1.0 0.999997673602 99.9199603606 INTERPRO IPR018060:Helix-turn-helix,AraC domain 4 2.0618556701 0.410337945046 882070,877874,881137,882822 181 58 4508 1.71766050676 1.0 0.999996779152 99.938015589 INTERPRO IPR018062:Helix-turn-helix,AraC type,subdomain 2 3 1.54639175258 0.424615236105 877874,881137,882822 181 36 4508 2.07550644567 1.0 0.99999626413 99.9560019897 INTERPRO IPR012287:Homeodomain-related 5 2.57731958763 0.513160830364 882923,882070,877874,881137,882822 181 93 4508 1.33903641656 1.0 0.999999565194 99.9957476657 Annotation Cluster 25 Enrichment Score: 0.346612126362 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0070011~peptidase activity,acting on L-amino acid peptides 6 3.09278350515 0.383381051762 879575,882811,878996,880624,878120,882368 119 89 2586 1.46501746766 1.0 0.975717012931 99.7904843509 GOTERM_BP_FAT GO:0006508~proteolysis 6 3.09278350515 0.410926891093 879575,882811,878996,880624,878120,882368 106 94 2352 1.41629867523 1.0 0.996526155169 99.9210967523 GOTERM_MF_FAT GO:0008233~peptidase activity 6 3.09278350515 0.579119800441 879575,882811,878996,880624,878120,882368 119 111 2586 1.17465364524 1.0 0.997596442534 99.9983955043 Annotation Cluster 26 Enrichment Score: 0.343212836522 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SMART SM00091:PAS 3 1.54639175258 0.429856959393 882923,880764,880118 30 40 803 2.0075 0.999999852922 0.980416658712 99.0908208851 INTERPRO IPR000014:PAS 3 1.54639175258 0.478906095307 882923,880764,880118 181 40 4508 1.8679558011 1.0 0.999999136937 99.9889957599 Annotation Cluster 27 Enrichment Score: 0.330757172821 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0019725~cellular homeostasis 3 1.54639175258 0.437858970254 881830,882090,882911 106 33 2352 2.01715265866 1.0 0.99690517915 99.9580525739 GOTERM_BP_FAT GO:0042592~homeostatic process 3 1.54639175258 0.497910635472 881830,882090,882911 106 37 2352 1.79908210097 1.0 0.998503692593 99.990873645 Annotation Cluster 28 Enrichment Score: 0.276097831614 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pae00260:Glycine,serine and threonine metabolism 4 2.0618556701 0.477916271014 881393,879479,882090,880337 81 46 1437 1.54267310789 1.0 0.99941157255 99.9721358111 KEGG_PATHWAY pag00260:Glycine,serine and threonine metabolism 3 1.54639175258 0.540880988086 879479,882090,880337 81 32 1437 1.66319444444 1.0 0.999783948012 99.9944782142 KEGG_PATHWAY pau00260:Glycine,serine and threonine metabolism 3 1.54639175258 0.574450976738 879479,882090,880337 81 34 1437 1.56535947712 1.0 0.999770822358 99.9978779109 Annotation Cluster 29 Enrichment Score: 0.254396794456 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0006767~water-soluble vitamin metabolic process 4 2.0618556701 0.551341712683 880159,877770,879081,880858 106 64 2352 1.38679245283 1.0 0.999212504152 99.9980020934 GOTERM_BP_FAT GO:0042364~water-soluble vitamin biosynthetic process 4 2.0618556701 0.551341712683 880159,877770,879081,880858 106 64 2352 1.38679245283 1.0 0.999212504152 99.9980020934 GOTERM_BP_FAT GO:0009110~vitamin biosynthetic process 4 2.0618556701 0.562063728621 880159,877770,879081,880858 106 65 2352 1.36545718433 1.0 0.999225542821 99.9985587078 GOTERM_BP_FAT GO:0006766~vitamin metabolic process 4 2.0618556701 0.562063728621 880159,877770,879081,880858 106 65 2352 1.36545718433 1.0 0.999225542821 99.9985587078 Annotation Cluster 30 Enrichment Score: 0.227776973507 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_MF_FAT GO:0008565~protein transporter activity 5 2.57731958763 0.376468189307 882937,880805,882778,878711,880962 119 68 2586 1.5978744439 1.0 0.976762179316 99.758463196 GOTERM_BP_FAT GO:0045184~establishment of protein localization 5 2.57731958763 0.685744088057 882937,880805,882778,878711,880962 106 103 2352 1.07712035171 1.0 0.999884096298 99.9999836728 GOTERM_BP_FAT GO:0015031~protein transport 5 2.57731958763 0.685744088057 882937,880805,882778,878711,880962 106 103 2352 1.07712035171 1.0 0.999884096298 99.9999836728 GOTERM_BP_FAT GO:0008104~protein localization 5 2.57731958763 0.693169869178 882937,880805,882778,878711,880962 106 104 2352 1.06676342525 1.0 0.999880206086 99.9999881777 Annotation Cluster 31 Enrichment Score: 0.214644593889 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0006461~protein complex assembly 3 1.54639175258 0.580048398903 878527,881087,879408 106 43 2352 1.54804738921 1.0 0.99920815549 99.9991817624 GOTERM_BP_FAT GO:0070271~protein complex biogenesis 3 1.54639175258 0.580048398903 878527,881087,879408 106 43 2352 1.54804738921 1.0 0.99920815549 99.9991817624 GOTERM_BP_FAT GO:0065003~macromolecular complex assembly 3 1.54639175258 0.592756981895 878527,881087,879408 106 44 2352 1.512864494 1.0 0.999260266103 99.9994596155 GOTERM_BP_FAT GO:0043933~macromolecular complex subunit organization 3 1.54639175258 0.694410823893 878527,881087,879408 106 53 2352 1.25596297615 1.0 0.999856617859 99.9999888072 Annotation Cluster 32 Enrichment Score: 0.192573775662 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR KEGG_PATHWAY pag02010:ABC transporters 4 2.0618556701 0.614202454393 878265,878078,881087,883092 81 56 1437 1.2671957672 1.0 0.999866087721 99.9993828975 KEGG_PATHWAY pap02010:ABC transporters 3 1.54639175258 0.65054596513 878078,881087,883092 81 39 1437 1.36467236467 1.0 0.999918648954 99.9998225098 KEGG_PATHWAY pau02010:ABC transporters 4 2.0618556701 0.66174266762 878265,878078,881087,883092 81 60 1437 1.18271604938 1.0 0.999908930706 99.9998822257 Annotation Cluster 33 Enrichment Score: 0.153900881527 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS membrane 16 8.24742268041 0.559690908398 878510,882778,880962,882230,883092,879408,881977,878756,878265,882333,878078,881087,878647,877893,881604,877578 194 407 5175 1.04865878062 1.0 0.992713047849 99.9930799696 GOTERM_CC_FAT GO:0005886~plasma membrane 13 6.70103092784 0.772788546687 878510,882778,880962,882230,883092,881977,878265,878078,881087,877893,880624,881604,877578 35 378 944 0.927588813303 1.0 1.0 99.9999228667 SP_PIR_KEYWORDS cell membrane 13 6.70103092784 0.798524832275 878510,882778,880962,882230,883092,881977,882333,878265,878078,881087,877893,881604,877578 194 390 5175 0.889175257732 1.0 0.999131890089 99.9999992496 Annotation Cluster 34 Enrichment Score: 0.153224070115 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS transmembrane 15 7.73195876289 0.523073185285 878200,878510,878711,882778,880944,882230,883092,879408,881977,878756,878265,881087,878647,881604,877578 194 371 5175 1.07851446356 1.0 0.992452875926 99.9824112187 GOTERM_CC_FAT GO:0016021~integral to membrane 18 9.27835051546 0.790944470526 878200,878510,880672,878711,882778,880944,882230,883092,881977,879408,878756,880478,878265,881087,878803,878647,881604,877578 35 522 944 0.930049261084 1.0 0.999999989694 99.9999650292 GOTERM_CC_FAT GO:0031224~intrinsic to membrane 18 9.27835051546 0.83872451737 878200,878510,880672,878711,882778,880944,882230,883092,881977,879408,878756,880478,878265,881087,878803,878647,881604,877578 35 536 944 0.905756929638 1.0 0.999999379676 99.9999970261 Annotation Cluster 35 Enrichment Score: 0.151823975141 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SMART SM00448:REC 4 2.0618556701 0.617865455733 880078,880513,878890,882366 30 86 803 1.24496124031 0.999999999998 0.995424787461 99.9680130003 INTERPRO IPR001789:Signal transduction response regulator,receiver region 4 2.0618556701 0.674905094916 880078,880513,878890,882366 181 86 4508 1.15842220224 1.0 0.999999999062 99.9999849926 GOTERM_MF_FAT GO:0000156~two-component response regulator activity 4 2.0618556701 0.840216978098 880078,880513,878890,882366 119 99 2586 0.878023936847 1.0 0.999972085555 99.9999999931 Annotation Cluster 36 Enrichment Score: 0.14968809726 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS cell division 3 1.54639175258 0.661829720176 882937,881322,883092 194 60 5175 1.3337628866 1.0 0.995931289091 99.9996825698 GOTERM_BP_FAT GO:0051301~cell division 3 1.54639175258 0.758363705174 882937,881322,883092 106 60 2352 1.10943396226 1.0 0.999960199353 99.9999995299 Annotation Cluster 37 Enrichment Score: 0.0912304935083 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0046903~secretion 3 1.54639175258 0.810530769942 882937,880805,880962 106 67 2352 0.993522951281 1.0 0.999988365627 99.9999999824 GOTERM_BP_FAT GO:0032940~secretion by cell 3 1.54639175258 0.810530769942 882937,880805,880962 106 67 2352 0.993522951281 1.0 0.999988365627 99.9999999824 GOTERM_BP_FAT GO:0009306~protein secretion 3 1.54639175258 0.810530769942 882937,880805,880962 106 67 2352 0.993522951281 1.0 0.999988365627 99.9999999824 Annotation Cluster 38 Enrichment Score: 0.0809463196103 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0009165~nucleotide biosynthetic process 3 1.54639175258 0.796736916088 878730,881743,878510 106 65 2352 1.02409288824 1.0 0.999985159389 99.9999999545 GOTERM_BP_FAT GO:0034404~nucleobase,nucleoside and nucleotide biosynthetic process 3 1.54639175258 0.847077313233 878730,881743,878510 106 73 2352 0.911863530628 1.0 0.999994188213 99.999999999 GOTERM_BP_FAT GO:0034654~nucleobase,nucleoside,nucleotide and nucleic acid biosynthetic process 3 1.54639175258 0.847077313233 878730,881743,878510 106 73 2352 0.911863530628 1.0 0.999994188213 99.999999999 Annotation Cluster 39 Enrichment Score: 0.0784597609954 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0006399~tRNA metabolic process 3 1.54639175258 0.749984830679 877658,880547,878095 106 59 2352 1.12823792773 1.0 0.999959459328 99.9999992552 GOTERM_BP_FAT GO:0006412~translation 4 2.0618556701 0.867313233861 877658,881728,880547,878095 106 107 2352 0.829483336272 1.0 0.999996987176 99.9999999999 GOTERM_BP_FAT GO:0034660~ncRNA metabolic process 3 1.54639175258 0.894112701831 877658,880547,878095 106 83 2352 0.802000454649 1.0 0.999999044378 100.0 Annotation Cluster 40 Enrichment Score: 0.0757727861677 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SMART SM00382:AAA 5 2.57731958763 0.822458321157 882923,880118,882170,880663,878078 30 150 803 0.892222222222 1.0 0.999686140819 99.999947529 INTERPRO IPR003593:ATPase,AAA+ type,core 5 2.57731958763 0.857710109091 882923,880118,882170,880663,878078 181 150 4508 0.830202578269 1.0 1.0 99.9999999999 Annotation Cluster 41 Enrichment Score: 0.0540138842842 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_CC_FAT GO:0031975~envelope 6 3.09278350515 0.816749560067 880078,879377,882778,880962,877893,882230 35 182 944 0.889167974882 1.0 0.999999881798 99.9999899942 GOTERM_CC_FAT GO:0030313~cell envelope 5 2.57731958763 0.912564020393 880078,882778,880962,877893,882230 35 179 944 0.753391859537 1.0 0.99999939406 99.9999999911 GOTERM_CC_FAT GO:0030312~external encapsulating structure 5 2.57731958763 0.92385985538 880078,882778,880962,877893,882230 35 184 944 0.732919254658 1.0 0.999998556096 99.9999999976 Annotation Cluster 42 Enrichment Score: 0.0509925221512 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_CC_FAT GO:0043228~non-membrane-bounded organelle 3 1.54639175258 0.889216428595 878578,881728,882426 35 99 944 0.817316017316 1.0 0.999999615997 99.999999916 GOTERM_CC_FAT GO:0043232~intracellular non-membrane-bounded organelle 3 1.54639175258 0.889216428595 878578,881728,882426 35 99 944 0.817316017316 1.0 0.999999615997 99.999999916 Annotation Cluster 43 Enrichment Score: 0.043532521006 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR SP_PIR_KEYWORDS transcription regulation 13 6.70103092784 0.784070772571 882923,880220,877874,879272,880008,880513,878142,882070,878527,880118,881137,882366,882822 194 385 5175 0.900722988352 1.0 0.999066811729 99.9999983148 SP_PIR_KEYWORDS Transcription 13 6.70103092784 0.798524832275 882923,880220,877874,879272,880008,880513,878142,882070,878527,880118,881137,882366,882822 194 390 5175 0.889175257732 1.0 0.999131890089 99.9999992496 SP_PIR_KEYWORDS dna-binding 13 6.70103092784 0.842472720697 882923,880220,877874,879272,880008,880513,878142,882070,878527,880118,881137,882366,882822 194 407 5175 0.852035259252 1.0 0.999511243484 99.9999999576 GOTERM_BP_FAT GO:0006355~regulation of transcription,DNA-dependent 17 8.76288659794 0.935867613158 880078,882923,880220,880764,877874,879272,880008,880513,878142,882070,878527,880118,880415,881137,878890,882366,882822 106 482 2352 0.782588272137 1.0 0.999999890939 100.0 GOTERM_BP_FAT GO:0051252~regulation of RNA metabolic process 17 8.76288659794 0.937188997523 880078,882923,880220,880764,877874,879272,880008,880513,878142,882070,878527,880118,880415,881137,878890,882366,882822 106 483 2352 0.780968006563 1.0 0.999999871125 100.0 GOTERM_BP_FAT GO:0006350~transcription 13 6.70103092784 0.949304161061 882923,880220,877874,879272,880008,880513,878142,882070,878527,880118,881137,882366,882822 106 390 2352 0.739622641509 1.0 0.999999910015 100.0 GOTERM_MF_FAT GO:0003700~transcription factor activity 12 6.18556701031 0.950514707447 878142,882070,880220,878527,880118,877874,879272,880415,880008,880513,881137,882822 119 358 2586 0.728416506267 1.0 0.999999920709 100.0 GOTERM_BP_FAT GO:0045449~regulation of transcription 17 8.76288659794 0.951360012494 880078,882923,880220,880764,877874,879272,880008,880513,878142,882070,878527,880118,880415,881137,878890,882366,882822 106 495 2352 0.762035448828 1.0 0.999999905504 100.0 GOTERM_MF_FAT GO:0030528~transcription regulator activity 15 7.73195876289 0.952508843799 880078,880220,877874,879272,880008,880513,878142,882070,878527,880118,880415,881137,882366,878890,882822 119 437 2586 0.745918504702 1.0 0.999999905932 100.0 GOTERM_MF_FAT GO:0003677~DNA binding 17 8.76288659794 0.97018714524 882923,880220,880581,877874,879272,881653,880008,880513,878142,882070,878527,880118,879069,880415,881137,882366,882822 119 508 2586 0.7272215973 1.0 0.999999981465 100.0 Annotation Cluster 44 Enrichment Score: 0.0271345908256 Category Term Count % Pvalue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR GOTERM_BP_FAT GO:0006812~cation transport 3 1.54639175258 0.898000298546 881830,878510,882911 106 84 2352 0.792452830189 1.0 0.999999010362 100.0 GOTERM_BP_FAT GO:0006811~ion transport 3 1.54639175258 0.982775536329 881830,878510,882911 106 129 2352 0.516015796402 1.0 0.999999999478 100.0