| 178 |
0.004573 |
0.1181 |
pa0900 |
N/A |
-12.48 |
0.049102 |
209 -- 242 |
75 -- 111 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________208___________________________________243\n_____________|_____________________________________|\n5'-UCC...UCCGA_______CAACU_____CC________UA_____G__ACCCA...UGU-3'\n______________UAGCCUG_______GAU__UC_GAAGA__CCGAC_GC\n______________|||||||_______|||__||_|||||__|||||_||\n______________AUCGGAC_______CUA__AG_CUUCU__GGCUG_CG\n3'-UUU...CACUA_______UACUCCU___UU__A_____CA_____A__CACCC...GUU-5'\n_____________|_____________________________________|\n_____________112___________________________________74\n |
209 -- 215 |
105 -- 111 |
-29.9732 kcal/mol |
5.9478 kcal/mol |
11.5432 kcal/mol |
208 243@LB@ | |@LB@5'-UCC...UCCGA CAACU CC UA G ACCCA...UGU-3'@LB@ UAGCCUG GAU UC GAAGA CCGAC GC@LB@ ||||||| ||| || ||||| ||||| ||@LB@ AUCGGAC CUA AG CUUCU GGCUG CG@LB@3'-UUU...CACUA UACUCCU UU A CA A CACCC...GUU-5'@LB@ | |@LB@ 112 74@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -29.9732 kcal/mol@LB@Unfolding Energy - mRNA 5.9478 kcal/mol@LB@Unfolding Energy - sRNA 11.5432 kcal/mol@LB@@LB@Position - mRNA 209 -- 242@LB@Position - sRNA 75 -- 111@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 105 -- 111@LB@ |
| 86 |
0.001073 |
0.05733 |
pa0916 |
N/A |
-12.39 |
0.051807 |
188 -- 200 |
107 -- 119 |
ribosomal protein S12 methylthiotransferase RimO |
|
_____________187___________201\n_____________|_____________|\n5'-GUC...CGCCU____A________AUGUC...GCU-3'\n______________ACCG_GGUUAGCC\n______________||||_|:||||||\n______________UGGC_CUAAUCGG\n3'-UUU...GUUUU____A________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
194 -- 200 |
107 -- 113 |
-18.1643 kcal/mol |
3.54951 kcal/mol |
2.23484 kcal/mol |
187 201@LB@ | |@LB@5'-GUC...CGCCU A AUGUC...GCU-3'@LB@ ACCG GGUUAGCC@LB@ |||| |:||||||@LB@ UGGC CUAAUCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.1643 kcal/mol@LB@Unfolding Energy - mRNA 3.54951 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 146 |
0.003267 |
0.1028 |
pa0918 |
N/A |
-13.83 |
0.021920 |
192 -- 207 |
107 -- 122 |
cytochrome b561 |
|
_____________191______________208\n_____________|________________|\n5'-CCA...GAGAA___________G____GGAAA...AAC-3'\n______________GGAACCGUGAU_AGCU\n______________::|||||||||_|||:\n______________UUUUGGCACUA_UCGG\n3'-UUU...CCAGU___________A____ACUAC...GUU-5'\n_____________|________________|\n_____________123______________106\n |
196 -- 202 |
112 -- 118 |
-20.0543 kcal/mol |
3.98833 kcal/mol |
2.23582 kcal/mol |
191 208@LB@ | |@LB@5'-CCA...GAGAA G GGAAA...AAC-3'@LB@ GGAACCGUGAU AGCU@LB@ ::||||||||| |||:@LB@ UUUUGGCACUA UCGG@LB@3'-UUU...CCAGU A ACUAC...GUU-5'@LB@ | |@LB@ 123 106@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -20.0543 kcal/mol@LB@Unfolding Energy - mRNA 3.98833 kcal/mol@LB@Unfolding Energy - sRNA 2.23582 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 107 -- 122@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 200 |
0.005522 |
0.1269 |
pa1052 |
N/A |
-14.49 |
0.014391 |
203 -- 224 |
103 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________202____________________225\n_____________|______________________|\n5'-AUG...CUGAU______________CU______UCGUU...AGG-3'\n______________GAAAAUCGUGAUUG__CCUGAU\n______________:||||:|||||||:__||||||\n______________UUUUUGGCACUAAU__GGACUA\n3'-UUU...CCCAG______________C_______CUCCU...GUU-5'\n_____________|______________________|\n_____________124____________________102\n |
210 -- 216 |
110 -- 116 |
-22.3823 kcal/mol |
5.65319 kcal/mol |
2.24344 kcal/mol |
202 225@LB@ | |@LB@5'-AUG...CUGAU CU UCGUU...AGG-3'@LB@ GAAAAUCGUGAUUG CCUGAU@LB@ :||||:|||||||: ||||||@LB@ UUUUUGGCACUAAU GGACUA@LB@3'-UUU...CCCAG C CUCCU...GUU-5'@LB@ | |@LB@ 124 102@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -22.3823 kcal/mol@LB@Unfolding Energy - mRNA 5.65319 kcal/mol@LB@Unfolding Energy - sRNA 2.24344 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 103 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 110 -- 116@LB@ |
| 90 |
0.001223 |
0.06177 |
pa1071 |
braF |
-14.34 |
0.015804 |
45 -- 124 |
40 -- 117 |
ABC transporter ATP-binding protein |
|
_____________44______________________________________________________________________________________125\n_____________|_______________________________________________________________________________________|\n5'-AUC...CUCGG______ACUC___GCG__U__U______G___C_______AG__AA____C_____CAAC__AA_____CAU_______________UGACC...UGG-3'\n______________CGUGAU____GCC____G_GG_GAUGGU_CUG_____UCC__GA__UGCG_GGGUU_____G__UACCG___GCUGAUCUU_CGGCC\n______________||||||____|||____|_||_|||::|_|||_____|||__||__||||_||||:_____|__|||||___||||||||:_||:||\n______________GCACUA____CGG____C_CC_CUAUUA_GAC_____AGG__CU__ACGC_CCCAG_____C__AUGGC___CGACUAGAG_GCUGG\n3'-UUU...UUUUG______AU_____ACUA_U__U__________UUCUC_______G_____A_____AGAGU_GA_________________C_____UCAAC...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________118_____________________________________________________________________________________39\n |
112 -- 118 |
47 -- 53 |
-64.1742 kcal/mol |
26.441 kcal/mol |
23.3958 kcal/mol |
44 125@LB@ | |@LB@5'-AUC...CUCGG ACUC GCG U U G C AG AA C CAAC AA CAU UGACC...UGG-3'@LB@ CGUGAU GCC G GG GAUGGU CUG UCC GA UGCG GGGUU G UACCG GCUGAUCUU CGGCC@LB@ |||||| ||| | || |||::| ||| ||| || |||| ||||: | ||||| ||||||||: ||:||@LB@ GCACUA CGG C CC CUAUUA GAC AGG CU ACGC CCCAG C AUGGC CGACUAGAG GCUGG@LB@3'-UUU...UUUUG AU ACUA U U UUCUC G A AGAGU GA C UCAAC...GUU-5'@LB@ | |@LB@ 118 39@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -64.1742 kcal/mol@LB@Unfolding Energy - mRNA 26.441 kcal/mol@LB@Unfolding Energy - sRNA 23.3958 kcal/mol@LB@@LB@Position - mRNA 45 -- 124@LB@Position - sRNA 40 -- 117@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 196 |
0.005339 |
0.1252 |
pa1085 |
flgJ |
-8.97 |
0.282317 |
179 -- 193 |
98 -- 119 |
peptidoglycan hydrolase FlgJ |
|
_____________178____________________194\n_____________|______________________|\n5'-GGU...ACCUG______________________CGACG...GCG-3'\n______________AUCGUGAUU_______UGAGGA\n______________|:|||||||_______||||||\n______________UGGCACUAA_______ACUCCU\n3'-UUU...GUUUU_________UCGGACU______CUAUU...GUU-5'\n_____________|______________________|\n_____________120____________________97\n |
181 -- 187 |
111 -- 117 |
-15.6275 kcal/mol |
4.40725 kcal/mol |
2.25153 kcal/mol |
178 194@LB@ | |@LB@5'-GGU...ACCUG CGACG...GCG-3'@LB@ AUCGUGAUU UGAGGA@LB@ |:||||||| ||||||@LB@ UGGCACUAA ACUCCU@LB@3'-UUU...GUUUU UCGGACU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 4.40725 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 179 -- 193@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 111 -- 117@LB@ |
| 35 |
0.0001057 |
0.01388 |
pa1103 |
N/A |
-18.12 |
0.000977 |
185 -- 207 |
81 -- 102 |
flagellar assembly protein FliH |
|
_____________184_____________________208\n_____________|_______________________|\n5'-CGA...GUGGC_________________U_____CCCAC...AGC-3'\n______________GAGGAGAUGAUCUGAGG_GGUCC\n______________||||||||:||||||:|_:||||\n______________CUCCUCUAUUAGACUUC_UCAGG\n3'-UUU...GACUA_______________________CUGAC...GUU-5'\n_____________|_______________________|\n_____________103_____________________80\n |
195 -- 201 |
86 -- 92 |
-35.642 kcal/mol |
10.0244 kcal/mol |
7.49511 kcal/mol |
184 208@LB@ | |@LB@5'-CGA...GUGGC U CCCAC...AGC-3'@LB@ GAGGAGAUGAUCUGAGG GGUCC@LB@ ||||||||:||||||:| :||||@LB@ CUCCUCUAUUAGACUUC UCAGG@LB@3'-UUU...GACUA CUGAC...GUU-5'@LB@ | |@LB@ 103 80@LB@@LB@@LB@Energy -18.12 kcal/mol@LB@Hybridization Energy -35.642 kcal/mol@LB@Unfolding Energy - mRNA 10.0244 kcal/mol@LB@Unfolding Energy - sRNA 7.49511 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 81 -- 102@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 86 -- 92@LB@ |
| 199 |
0.005488 |
0.1268 |
pa1158 |
N/A |
-11.27 |
0.095596 |
213 -- 231 |
101 -- 120 |
two-component sensor |
|
_____________212__________________232\n_____________|____________________|\n5'-GCG...GACGC_____C_CGC__________ACGGC...CCG-3'\n______________AGCCG_G____GCCUGAUGA\n______________|:|||_|____|||||||||\n______________UUGGC_C____CGGACUACU\n3'-UUU...AGUUU_____A_UAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-21.6813 kcal/mol |
8.17512 kcal/mol |
2.2437 kcal/mol |
212 232@LB@ | |@LB@5'-GCG...GACGC C CGC ACGGC...CCG-3'@LB@ AGCCG G GCCUGAUGA@LB@ |:||| | |||||||||@LB@ UUGGC C CGGACUACU@LB@3'-UUU...AGUUU A UAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.6813 kcal/mol@LB@Unfolding Energy - mRNA 8.17512 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
