111 |
0.001873 |
0.07755 |
pa4347 |
N/A |
-11.13 |
0.102611 |
35 -- 49 |
91 -- 105 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________34______________50\n_____________|_______________|\n5'-CUG...ACAUG____U__________GUGCC...UCC-3'\n______________GAUG_GGAGAUGAUC\n______________||||_||||||:|||\n______________CUAC_CCUCUAUUAG\n3'-UUU...UCGGA____U__________ACUUC...GUU-5'\n_____________|_______________|\n_____________106_____________90\n |
41 -- 47 |
93 -- 99 |
-20.2492 kcal/mol |
4.9637 kcal/mol |
4.15885 kcal/mol |
34 50@LB@ | |@LB@5'-CUG...ACAUG U GUGCC...UCC-3'@LB@ GAUG GGAGAUGAUC@LB@ |||| ||||||:|||@LB@ CUAC CCUCUAUUAG@LB@3'-UUU...UCGGA U ACUUC...GUU-5'@LB@ | |@LB@ 106 90@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -20.2492 kcal/mol@LB@Unfolding Energy - mRNA 4.9637 kcal/mol@LB@Unfolding Energy - sRNA 4.15885 kcal/mol@LB@@LB@Position - mRNA 35 -- 49@LB@Position - sRNA 91 -- 105@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 93 -- 99@LB@ |
77 |
0.0008517 |
0.05078 |
pa4366 |
sodB |
-3.26 |
0.982782 |
263 -- 269 |
117 -- 123 |
superoxide dismutase |
|
_____________262_____270\n_____________|_______|\n5'-GAC...UCCGC_______CUGGA...ACA-3'\n______________AGAAACC\n______________|:|||||\n______________UUUUUGG\n3'-UUU...CCCAG_______CACUA...GUU-5'\n_____________|_______|\n_____________124_____116\n |
263 -- 269 |
117 -- 123 |
-5.6152 kcal/mol |
1.17222 kcal/mol |
1.17573 kcal/mol |
262 270@LB@ | |@LB@5'-GAC...UCCGC CUGGA...ACA-3'@LB@ AGAAACC@LB@ |:|||||@LB@ UUUUUGG@LB@3'-UUU...CCCAG CACUA...GUU-5'@LB@ | |@LB@ 124 116@LB@@LB@@LB@Energy -3.26 kcal/mol@LB@Hybridization Energy -5.6152 kcal/mol@LB@Unfolding Energy - mRNA 1.17222 kcal/mol@LB@Unfolding Energy - sRNA 1.17573 kcal/mol@LB@@LB@Position - mRNA 263 -- 269@LB@Position - sRNA 117 -- 123@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 117 -- 123@LB@ |
75 |
0.0008154 |
0.04991 |
pa4367 |
bifA |
-16.44 |
0.003694 |
124 -- 142 |
99 -- 118 |
protein BifA |
|
_____________123__________________143\n_____________|____________________|\n5'-CGA...UUCGC_____________CU_____UAAAC...UCG-3'\n______________UCGUGAU_AGCCU__UGAGG\n______________:||||||_|||||__|||||\n______________GGCACUA_UCGGA__ACUCC\n3'-UUU...UUUUU_______A_____CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
124 -- 130 |
112 -- 118 |
-25.0523 kcal/mol |
6.36496 kcal/mol |
2.24947 kcal/mol |
123 143@LB@ | |@LB@5'-CGA...UUCGC CU UAAAC...UCG-3'@LB@ UCGUGAU AGCCU UGAGG@LB@ :|||||| ||||| |||||@LB@ GGCACUA UCGGA ACUCC@LB@3'-UUU...UUUUU A CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -25.0523 kcal/mol@LB@Unfolding Energy - mRNA 6.36496 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 124 -- 142@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 112 -- 118@LB@ |
191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
164 |
0.004161 |
0.1159 |
pa4420 |
N/A |
-11.64 |
0.078545 |
165 -- 187 |
40 -- 62 |
S-adenosyl-methyltransferase MraW |
|
_____________164______________________188\n_____________|________________________|\n5'-GAC...GGUGG_________AC__A__A_______UGAUC...GAA-3'\n______________GC_UGCCGG__GA_CU_CGCGACC\n______________||_|:||||__||_||_|||||||\n______________CG_AUGGCC__CU_GA_GCGCUGG\n3'-UUU...AGAGU__A______GA__A__________UCAAC...GUU-5'\n_____________|________________________|\n_____________63_______________________39\n |
181 -- 187 |
40 -- 46 |
-28.7872 kcal/mol |
5.30942 kcal/mol |
11.8411 kcal/mol |
164 188@LB@ | |@LB@5'-GAC...GGUGG AC A A UGAUC...GAA-3'@LB@ GC UGCCGG GA CU CGCGACC@LB@ || |:|||| || || |||||||@LB@ CG AUGGCC CU GA GCGCUGG@LB@3'-UUU...AGAGU A GA A UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -28.7872 kcal/mol@LB@Unfolding Energy - mRNA 5.30942 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 165 -- 187@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 40 -- 46@LB@ |
85 |
0.001072 |
0.05733 |
pa4430 |
N/A |
-13.41 |
0.028331 |
184 -- 204 |
101 -- 120 |
cytochrome b |
|
_____________183___________________205\n_____________|_____________________|\n5'-ACC...GCGUG____AG__GAA__________ACAAG...UCU-3'\n______________GACC__GA___AGCCUGAUGA\n______________:|||__||___||||||||||\n______________UUGG__CU___UCGGACUACU\n3'-UUU...AGUUU____CA__AA___________CCUCU...GUU-5'\n_____________|_____________________|\n_____________121___________________100\n |
198 -- 204 |
101 -- 107 |
-22.7142 kcal/mol |
7.05943 kcal/mol |
2.2437 kcal/mol |
183 205@LB@ | |@LB@5'-ACC...GCGUG AG GAA ACAAG...UCU-3'@LB@ GACC GA AGCCUGAUGA@LB@ :||| || ||||||||||@LB@ UUGG CU UCGGACUACU@LB@3'-UUU...AGUUU CA AA CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -22.7142 kcal/mol@LB@Unfolding Energy - mRNA 7.05943 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
51 |
0.0003802 |
0.03426 |
pa4431 |
N/A |
-18.94 |
0.000478 |
156 -- 218 |
72 -- 123 |
iron-sulfur protein |
|
_____________155________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-UAU...UACUU_______________AACAGGUCUGAAG____________C________U____AA____G_____AAUGC...UCG-3'\n______________AAAGGCC_UGAUUAG_____________CUGAUG_GGAGA_GA_CUGAA_GAGU__UGAC_GCGUG\n______________|||::||_|||||||_____________||||||_|||||_:|_|||||_||||__:|||_|||||\n______________UUUUUGG_ACUAAUC_____________GACUAC_CCUCU_UU_GACUU_CUCA__GCUG_CGCAC\n3'-UUU...CCCAG_______C_______G__________________U_____A__A__________G_____A_____CCAGA...GUU-5'\n_____________|__________________________________________________________________|\n_____________124________________________________________________________________71\n |
163 -- 169 |
109 -- 115 |
-49.3111 kcal/mol |
18.1339 kcal/mol |
12.2386 kcal/mol |
155 219@LB@ | |@LB@5'-UAU...UACUU AACAGGUCUGAAG C U AA G AAUGC...UCG-3'@LB@ AAAGGCC UGAUUAG CUGAUG GGAGA GA CUGAA GAGU UGAC GCGUG@LB@ |||::|| ||||||| |||||| ||||| :| ||||| |||| :||| |||||@LB@ UUUUUGG ACUAAUC GACUAC CCUCU UU GACUU CUCA GCUG CGCAC@LB@3'-UUU...CCCAG C G U A A G A CCAGA...GUU-5'@LB@ | |@LB@ 124 71@LB@@LB@@LB@Energy -18.94 kcal/mol@LB@Hybridization Energy -49.3111 kcal/mol@LB@Unfolding Energy - mRNA 18.1339 kcal/mol@LB@Unfolding Energy - sRNA 12.2386 kcal/mol@LB@@LB@Position - mRNA 156 -- 218@LB@Position - sRNA 72 -- 123@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 109 -- 115@LB@ |
151 |
0.003549 |
0.1073 |
pa4443 |
cysD |
-8.92 |
0.288201 |
61 -- 67 |
74 -- 80 |
sulfate adenylyltransferase subunit 2 |
|
_____________60______68\n_____________|_______|\n5'-CUU...UCGCC_______AGGCU...ACU-3'\n______________GGCUGCG\n______________|:|||||\n______________CUGACGC\n3'-UUU...UCAGG_______ACCCA...GUU-5'\n_____________|_______|\n_____________81______73\n |
61 -- 67 |
74 -- 80 |
-10.9675 kcal/mol |
1.23954 kcal/mol |
0.805988 kcal/mol |
60 68@LB@ | |@LB@5'-CUU...UCGCC AGGCU...ACU-3'@LB@ GGCUGCG@LB@ |:|||||@LB@ CUGACGC@LB@3'-UUU...UCAGG ACCCA...GUU-5'@LB@ | |@LB@ 81 73@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -10.9675 kcal/mol@LB@Unfolding Energy - mRNA 1.23954 kcal/mol@LB@Unfolding Energy - sRNA 0.805988 kcal/mol@LB@@LB@Position - mRNA 61 -- 67@LB@Position - sRNA 74 -- 80@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 74 -- 80@LB@ |
93 |
0.001289 |
0.06355 |
pa4454 |
N/A |
-9.11 |
0.266760 |
170 -- 178 |
75 -- 83 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______179\n_____________|_________|\n5'-CCG...UUCAU_________UUUGA...UGG-3'\n______________UCUGACUGC\n______________||:||||||\n______________AGGCUGACG\n3'-UUU...UUCUC_________CACCC...GUU-5'\n_____________|_________|\n_____________84________74\n |
172 -- 178 |
75 -- 81 |
-14.8179 kcal/mol |
1.6159 kcal/mol |
4.09544 kcal/mol |
169 179@LB@ | |@LB@5'-CCG...UUCAU UUUGA...UGG-3'@LB@ UCUGACUGC@LB@ ||:||||||@LB@ AGGCUGACG@LB@3'-UUU...UUCUC CACCC...GUU-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -14.8179 kcal/mol@LB@Unfolding Energy - mRNA 1.6159 kcal/mol@LB@Unfolding Energy - sRNA 4.09544 kcal/mol@LB@@LB@Position - mRNA 170 -- 178@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 75 -- 81@LB@ |
46 |
0.0003006 |
0.02946 |
pa4460 |
N/A |
-9.10 |
0.267813 |
234 -- 244 |
75 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________233_________245\n_____________|___________|\n5'-GCG...UUUUC___________CGCCC...UCC-3'\n______________GGUCUGACUGC\n______________:|||:||||||\n______________UCAGGCUGACG\n3'-UUU...ACUUC___________CACCC...GUU-5'\n_____________|___________|\n_____________86__________74\n |
238 -- 244 |
75 -- 81 |
-18.7561 kcal/mol |
4.01129 kcal/mol |
5.64974 kcal/mol |
233 245@LB@ | |@LB@5'-GCG...UUUUC CGCCC...UCC-3'@LB@ GGUCUGACUGC@LB@ :|||:||||||@LB@ UCAGGCUGACG@LB@3'-UUU...ACUUC CACCC...GUU-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -9.10 kcal/mol@LB@Hybridization Energy -18.7561 kcal/mol@LB@Unfolding Energy - mRNA 4.01129 kcal/mol@LB@Unfolding Energy - sRNA 5.64974 kcal/mol@LB@@LB@Position - mRNA 234 -- 244@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 75 -- 81@LB@ |