98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |
118 |
0.002082 |
0.07999 |
pa5066 |
hisI |
-12.42 |
0.050876 |
194 -- 221 |
100 -- 123 |
phosphoribosyl-AMP cyclohydrolase |
|
_____________193__________________________222\n_____________|____________________________|\n5'-CGA...CGUGG_______A___AAGAC_____G______AUUCA...GGA-3'\n______________AAAGACC_UGA_____UGGCU_GAUGAG\n______________|||:|||_|||_____|:||:_||||||\n______________UUUUUGG_ACU_____AUCGG_CUACUC\n3'-UUU...CCCAG_______C___A_________A______CUCUA...GUU-5'\n_____________|____________________________|\n_____________124__________________________99\n |
194 -- 200 |
117 -- 123 |
-21.0853 kcal/mol |
6.41847 kcal/mol |
2.24995 kcal/mol |
193 222@LB@ | |@LB@5'-CGA...CGUGG A AAGAC G AUUCA...GGA-3'@LB@ AAAGACC UGA UGGCU GAUGAG@LB@ |||:||| ||| |:||: ||||||@LB@ UUUUUGG ACU AUCGG CUACUC@LB@3'-UUU...CCCAG C A A CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -21.0853 kcal/mol@LB@Unfolding Energy - mRNA 6.41847 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 117 -- 123@LB@ |
31 |
8.059e-05 |
0.01177 |
pa5164 |
rmlC |
-15.78 |
0.005968 |
187 -- 204 |
101 -- 122 |
dTDP-4-dehydrorhamnose 3 5-epimerase |
|
_____________186____________________205\n_____________|______________________|\n5'-ACC...UGACC_________UA___________AAGCG...GCG-3'\n______________GAGACCGUG______CUGAUGA\n______________:|:||||||______|||||||\n______________UUUUGGCAC______GACUACU\n3'-UUU...CCAGU_________UAAUCG_______CCUCU...GUU-5'\n_____________|______________________|\n_____________123____________________100\n |
198 -- 204 |
101 -- 107 |
-20.9444 kcal/mol |
2.92213 kcal/mol |
2.24427 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...UGACC UA AAGCG...GCG-3'@LB@ GAGACCGUG CUGAUGA@LB@ :|:|||||| |||||||@LB@ UUUUGGCAC GACUACU@LB@3'-UUU...CCAGU UAAUCG CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.9444 kcal/mol@LB@Unfolding Energy - mRNA 2.92213 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
32 |
8.271e-05 |
0.01177 |
pa5176 |
N/A |
-17.77 |
0.001308 |
216 -- 255 |
75 -- 119 |
ADP-ribose diphosphatase NudE |
|
_____________215_____________________________________________256\n_____________|_______________________________________________|\n5'-GAA...AACCC_____ACUC___________C_____C___GC_______________UCGAU...AGC-3'\n______________ACCGU_____GCC_____AG_GAGAU_GUC__GAAGAG_CCGACUGU\n______________|||||_____|||_____||_|||||_:||__||||||_|||||||:\n______________UGGCA_____CGG_____UC_CUCUA_UAG__CUUCUC_GGCUGACG\n3'-UUU...GUUUU_____CUAAU___ACUAC________U___A_______A________CACCC...GUU-5'\n_____________|_______________________________________________|\n_____________120_____________________________________________74\n |
249 -- 255 |
75 -- 81 |
-41.4292 kcal/mol |
11.4765 kcal/mol |
12.1884 kcal/mol |
215 256@LB@ | |@LB@5'-GAA...AACCC ACUC C C GC UCGAU...AGC-3'@LB@ ACCGU GCC AG GAGAU GUC GAAGAG CCGACUGU@LB@ ||||| ||| || ||||| :|| |||||| |||||||:@LB@ UGGCA CGG UC CUCUA UAG CUUCUC GGCUGACG@LB@3'-UUU...GUUUU CUAAU ACUAC U A A CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -17.77 kcal/mol@LB@Hybridization Energy -41.4292 kcal/mol@LB@Unfolding Energy - mRNA 11.4765 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 216 -- 255@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 75 -- 81@LB@ |
99 |
0.001467 |
0.06809 |
pa5206 |
argE |
-18.10 |
0.000993 |
157 -- 251 |
40 -- 119 |
acetylornithine deacetylase |
|
_____________156______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-UGA...CCACU____C___A____A________CUC___CC__G__________CA___C___UGCC______GAAAGAC_____C_G__C_______GC____U__UCCGU...UGG-3'\n______________GCCG_GAU_GGCC_UGAUGGGG___GAU__GU_UGGAGAGUCC___UG_CGU____GUCUCU_______CAGUU_G_CG_GCUGAUC__CGCG_CU\n______________:|||_|||_:|||_|||||:||___|||__:|_||:|||||||___||_|||____||||||_______|||:|_:_||_|||||||__||||_|:\n______________UGGC_CUA_UCGG_ACUACUCC___CUA__UA_ACUUCUCAGG___AC_GCA____CAGAGA_______GUCGA_U_GC_CGACUAG__GCGC_GG\n3'-UUU...GUUUU____A___A_____________U_____U___G__________CUG______CC____________________A_G__________A_____U__UCAAC...GUU-5'\n_____________|________________________________________________________________________________________________|\n_____________120______________________________________________________________________________________________39\n |
193 -- 199 |
81 -- 87 |
-84.9505 kcal/mol |
43.4484 kcal/mol |
23.4062 kcal/mol |
156 252@LB@ | |@LB@5'-UGA...CCACU C A A CUC CC G CA C UGCC GAAAGAC C G C GC U UCCGU...UGG-3'@LB@ GCCG GAU GGCC UGAUGGGG GAU GU UGGAGAGUCC UG CGU GUCUCU CAGUU G CG GCUGAUC CGCG CU@LB@ :||| ||| :||| |||||:|| ||| :| ||:||||||| || ||| |||||| |||:| : || ||||||| |||| |:@LB@ UGGC CUA UCGG ACUACUCC CUA UA ACUUCUCAGG AC GCA CAGAGA GUCGA U GC CGACUAG GCGC GG@LB@3'-UUU...GUUUU A A U U G CUG CC A G A U UCAAC...GUU-5'@LB@ | |@LB@ 120 39@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -84.9505 kcal/mol@LB@Unfolding Energy - mRNA 43.4484 kcal/mol@LB@Unfolding Energy - sRNA 23.4062 kcal/mol@LB@@LB@Position - mRNA 157 -- 251@LB@Position - sRNA 40 -- 119@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 81 -- 87@LB@ |
10 |
1.1e-05 |
0.004211 |
pa5300 |
cycB |
-16.80 |
0.002828 |
155 -- 174 |
99 -- 117 |
cytochrome C5 |
|
_____________154__________________175\n_____________|____________________|\n5'-GGG...CCGGG______A____AC_______GUGUA...GCA-3'\n______________UGUGAU_AGCC__GAUGAGG\n______________:|||||_||||__|||||||\n______________GCACUA_UCGG__CUACUCC\n3'-UUU...UUUUG______A____A________UCUAU...GUU-5'\n_____________|____________________|\n_____________118__________________98\n |
168 -- 174 |
99 -- 105 |
-24.2788 kcal/mol |
5.2486 kcal/mol |
2.23779 kcal/mol |
154 175@LB@ | |@LB@5'-GGG...CCGGG A AC GUGUA...GCA-3'@LB@ UGUGAU AGCC GAUGAGG@LB@ :||||| |||| |||||||@LB@ GCACUA UCGG CUACUCC@LB@3'-UUU...UUUUG A A UCUAU...GUU-5'@LB@ | |@LB@ 118 98@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -24.2788 kcal/mol@LB@Unfolding Energy - mRNA 5.2486 kcal/mol@LB@Unfolding Energy - sRNA 2.23779 kcal/mol@LB@@LB@Position - mRNA 155 -- 174@LB@Position - sRNA 99 -- 117@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 99 -- 105@LB@ |
112 |
0.001904 |
0.07812 |
pa5310 |
N/A |
-10.92 |
0.114175 |
276 -- 285 |
74 -- 83 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________275________286\n_____________|__________|\n5'-CGA...CCCUC__________CCAGC...CGC-3'\n______________UCCGGCUGCG\n______________||||:|||||\n______________AGGCUGACGC\n3'-UUU...UUCUC__________ACCCA...GUU-5'\n_____________|__________|\n_____________84_________73\n |
279 -- 285 |
74 -- 80 |
-18.1359 kcal/mol |
3.11348 kcal/mol |
4.10139 kcal/mol |
275 286@LB@ | |@LB@5'-CGA...CCCUC CCAGC...CGC-3'@LB@ UCCGGCUGCG@LB@ ||||:|||||@LB@ AGGCUGACGC@LB@3'-UUU...UUCUC ACCCA...GUU-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -18.1359 kcal/mol@LB@Unfolding Energy - mRNA 3.11348 kcal/mol@LB@Unfolding Energy - sRNA 4.10139 kcal/mol@LB@@LB@Position - mRNA 276 -- 285@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 74 -- 80@LB@ |
5 |
7.253e-07 |
0.0006667 |
pa5351 |
rubA1 |
-17.51 |
0.001615 |
172 -- 222 |
71 -- 121 |
rubredoxin |
|
_____________171___________________________________________________223\n_____________|_____________________________________________________|\n5'-CGG...GCGCU__________AAC__GCCC____UAAACAA_______AG_____AA_______UGUGU...UGC-3'\n______________GAACCGUGGU___CC____GAGG________UGAAGA___UGGC__UGCGUGG\n______________:|||||||:|___||____||||________||||||___:|:|__|||||||\n______________UUUGGCACUA___GG____CUCC________ACUUCU___GCUG__ACGCACC\n3'-UUU...CAGUU__________AUC__ACUA____UCUAUUAG______CAG_____________CAGAG...GUU-5'\n_____________|_____________________________________________________|\n_____________122___________________________________________________70\n |
216 -- 222 |
71 -- 77 |
-42.807 kcal/mol |
11.4444 kcal/mol |
13.8582 kcal/mol |
171 223@LB@ | |@LB@5'-CGG...GCGCU AAC GCCC UAAACAA AG AA UGUGU...UGC-3'@LB@ GAACCGUGGU CC GAGG UGAAGA UGGC UGCGUGG@LB@ :|||||||:| || |||| |||||| :|:| |||||||@LB@ UUUGGCACUA GG CUCC ACUUCU GCUG ACGCACC@LB@3'-UUU...CAGUU AUC ACUA UCUAUUAG CAG CAGAG...GUU-5'@LB@ | |@LB@ 122 70@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -42.807 kcal/mol@LB@Unfolding Energy - mRNA 11.4444 kcal/mol@LB@Unfolding Energy - sRNA 13.8582 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 71 -- 121@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 71 -- 77@LB@ |
54 |
0.000431 |
0.03637 |
pa5355 |
glcD |
-9.87 |
0.190611 |
164 -- 178 |
41 -- 54 |
glycolate oxidase subunit GlcD |
|
_____________163_____________179\n_____________|_______________|\n5'-GCU...CGCUU_______C__C____AACCA...AAC-3'\n______________GCUGAUC_CG_CGAC\n______________|||||||_||_||||\n______________CGACUAG_GC_GCUG\n3'-UUU...AUGGC_______A_______GUCAA...GUU-5'\n_____________|_______________|\n_____________55______________40\n |
164 -- 170 |
48 -- 54 |
-19.1225 kcal/mol |
2.27094 kcal/mol |
6.98983 kcal/mol |
163 179@LB@ | |@LB@5'-GCU...CGCUU C C AACCA...AAC-3'@LB@ GCUGAUC CG CGAC@LB@ ||||||| || ||||@LB@ CGACUAG GC GCUG@LB@3'-UUU...AUGGC A GUCAA...GUU-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -19.1225 kcal/mol@LB@Unfolding Energy - mRNA 2.27094 kcal/mol@LB@Unfolding Energy - sRNA 6.98983 kcal/mol@LB@@LB@Position - mRNA 164 -- 178@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 48 -- 54@LB@ |
95 |
0.001333 |
0.06355 |
pa5380 |
gbdR |
-10.99 |
0.110367 |
154 -- 228 |
78 -- 123 |
protein GbdR |
|
_____________153_________________________________________________________________________229\n_____________|___________________________________________________________________________|\n5'-UGC...AUAAA_______UC____GA______CUUGCUCAGC___________CACCCA___CCACGUACGCGCCC_______C__CACAG...CGG-3'\n______________AAAAGCC__GUGA__GGCCUG__________GUGAGGAGAUA______UGA______________GGAGUCC_AC\n______________||||:||__||||__:|||||__________:||||||||||______|||______________:||||||_||\n______________UUUUUGG__CACU__UCGGAC__________UACUCCUCUAU______ACU______________UCUCAGG_UG\n3'-UUU...CCCAG_____________AA___________________________UAG___________________________C__ACGCA...GUU-5'\n_____________|___________________________________________________________________________|\n_____________124_________________________________________________________________________77\n |
219 -- 225 |
81 -- 87 |
-45.4439 kcal/mol |
22.3385 kcal/mol |
12.1238 kcal/mol |
153 229@LB@ | |@LB@5'-UGC...AUAAA UC GA CUUGCUCAGC CACCCA CCACGUACGCGCCC C CACAG...CGG-3'@LB@ AAAAGCC GUGA GGCCUG GUGAGGAGAUA UGA GGAGUCC AC@LB@ ||||:|| |||| :||||| :|||||||||| ||| :|||||| ||@LB@ UUUUUGG CACU UCGGAC UACUCCUCUAU ACU UCUCAGG UG@LB@3'-UUU...CCCAG AA UAG C ACGCA...GUU-5'@LB@ | |@LB@ 124 77@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -45.4439 kcal/mol@LB@Unfolding Energy - mRNA 22.3385 kcal/mol@LB@Unfolding Energy - sRNA 12.1238 kcal/mol@LB@@LB@Position - mRNA 154 -- 228@LB@Position - sRNA 78 -- 123@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 81 -- 87@LB@ |