| 158 |
0.003862 |
0.1123 |
pa4780 |
N/A |
-10.69 |
0.128339 |
184 -- 207 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________183________________________208\n_____________|__________________________|\n5'-AGG...CCCGA_______C_______A_C_____A__CACCC...UGG-3'\n______________GGAACCG_G__UAGC_C_GAUGA_GA\n______________::|||||_|__||||_|_|||||_||\n______________UUUUGGC_C__AUCG_G_CUACU_CU\n3'-UUU...CCAGU_______A_UA______A_____C__CUAUU...GUU-5'\n_____________|__________________________|\n_____________123________________________97\n |
184 -- 190 |
116 -- 122 |
-18.2775 kcal/mol |
5.33909 kcal/mol |
2.25226 kcal/mol |
183 208@LB@ | |@LB@5'-AGG...CCCGA C A C A CACCC...UGG-3'@LB@ GGAACCG G UAGC C GAUGA GA@LB@ ::||||| | |||| | ||||| ||@LB@ UUUUGGC C AUCG G CUACU CU@LB@3'-UUU...CCAGU A UA A C CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -18.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.33909 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 179 |
0.004617 |
0.1185 |
pa4812 |
fdnG |
-14.50 |
0.014314 |
180 -- 196 |
94 -- 109 |
formate dehydrogenase-O major subunit |
|
_____________179_______________197\n_____________|_________________|\n5'-CCC...CCUUU________C________CACGA...CCG-3'\n______________GCCUGAUG_AGGAGAUG\n______________||||||||_|||||||:\n______________CGGACUAC_UCCUCUAU\n3'-UUU...CUAAU_________________UAGAC...GUU-5'\n_____________|_________________|\n_____________110_______________93\n |
190 -- 196 |
94 -- 100 |
-26.4921 kcal/mol |
6.69504 kcal/mol |
5.30224 kcal/mol |
179 197@LB@ | |@LB@5'-CCC...CCUUU C CACGA...CCG-3'@LB@ GCCUGAUG AGGAGAUG@LB@ |||||||| |||||||:@LB@ CGGACUAC UCCUCUAU@LB@3'-UUU...CUAAU UAGAC...GUU-5'@LB@ | |@LB@ 110 93@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -26.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.69504 kcal/mol@LB@Unfolding Energy - sRNA 5.30224 kcal/mol@LB@@LB@Position - mRNA 180 -- 196@LB@Position - sRNA 94 -- 109@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 37 |
0.0001556 |
0.01933 |
pa4880 |
N/A |
-12.85 |
0.039617 |
174 -- 244 |
39 -- 119 |
bacterioferritin |
|
_____________173_____________________________________________________________________________________245\n_____________|_______________________________________________________________________________________|\n5'-CGC...UUUUC________C_____CA________A____C__U__CCACC____A____A__GAC________________________________UGCCC...GCC-3'\n______________ACCG_GAU_AGCCU____AGGAGA_AA_C_GA_GA_____GUUC_ACUG_CG___GUC___CAG___ACC__CU____UCGCGACCG\n______________||||_|||_|||||____||||||_||_|_||_||_____||:|_||||_||___|||___|||___|||__||____||||||||:\n______________UGGC_CUA_UCGGA____UCCUCU_UU_G_CU_CU_____CAGG_UGAC_GC___CAG___GUC___UGG__GA____AGCGCUGGU\n3'-UUU...GUUUU____A___A_____CUAC______A__A_A__U___________C_______ACC___AGA___GAA___CC__CUAG_________CAACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________38\n |
238 -- 244 |
39 -- 45 |
-53.1463 kcal/mol |
16.8944 kcal/mol |
23.4063 kcal/mol |
173 245@LB@ | |@LB@5'-CGC...UUUUC C CA A C U CCACC A A GAC UGCCC...GCC-3'@LB@ ACCG GAU AGCCU AGGAGA AA C GA GA GUUC ACUG CG GUC CAG ACC CU UCGCGACCG@LB@ |||| ||| ||||| |||||| || | || || ||:| |||| || ||| ||| ||| || ||||||||:@LB@ UGGC CUA UCGGA UCCUCU UU G CU CU CAGG UGAC GC CAG GUC UGG GA AGCGCUGGU@LB@3'-UUU...GUUUU A A CUAC A A A U C ACC AGA GAA CC CUAG CAACU...GUU-5'@LB@ | |@LB@ 120 38@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -53.1463 kcal/mol@LB@Unfolding Energy - mRNA 16.8944 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 174 -- 244@LB@Position - sRNA 39 -- 119@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 162 |
0.00407 |
0.1155 |
pa4993 |
N/A |
-9.83 |
0.193366 |
13 -- 32 |
104 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12___________________33\n_____________|____________________|\n5'-CGA...CGCGC_____C___AAAA_______ACCAU...GCC-3'\n______________AAGCC_UGA____GGCCUGA\n______________||:||_|||____:||||||\n______________UUUGG_ACU____UCGGACU\n3'-UUU...CAGUU_____C___AA_________ACUCC...GUU-5'\n_____________|____________________|\n_____________122__________________103\n |
26 -- 32 |
104 -- 110 |
-17.5213 kcal/mol |
5.44748 kcal/mol |
2.24203 kcal/mol |
12 33@LB@ | |@LB@5'-CGA...CGCGC C AAAA ACCAU...GCC-3'@LB@ AAGCC UGA GGCCUGA@LB@ ||:|| ||| :||||||@LB@ UUUGG ACU UCGGACU@LB@3'-UUU...CAGUU C AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -17.5213 kcal/mol@LB@Unfolding Energy - mRNA 5.44748 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 62 |
0.0005356 |
0.0397 |
pa5012 |
waaF |
-13.04 |
0.035456 |
194 -- 235 |
70 -- 110 |
heptosyltransferase II |
|
_____________193___________________________________________236\n_____________|_____________________________________________|\n5'-ACG...UCCGG_______AU______AU______UCGUA_____CUC___G_____GGACA...UCG-3'\n______________AGCCUGA____GAGA___UCUGA_____GGUCC___CUG_GUGGG\n______________|||||||____||||___|||||_____:||||___|||_|||||\n______________UCGGACU____CUCU___AGACU_____UCAGG___GAC_CACCC\n3'-UUU...ACUAA_______ACUC____AUU_____UC________CU____G_____AGAGA...GUU-5'\n_____________|_____________________________________________|\n_____________111___________________________________________69\n |
194 -- 200 |
104 -- 110 |
-40.3278 kcal/mol |
14.3527 kcal/mol |
12.939 kcal/mol |
193 236@LB@ | |@LB@5'-ACG...UCCGG AU AU UCGUA CUC G GGACA...UCG-3'@LB@ AGCCUGA GAGA UCUGA GGUCC CUG GUGGG@LB@ ||||||| |||| ||||| :|||| ||| |||||@LB@ UCGGACU CUCU AGACU UCAGG GAC CACCC@LB@3'-UUU...ACUAA ACUC AUU UC CU G AGAGA...GUU-5'@LB@ | |@LB@ 111 69@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -40.3278 kcal/mol@LB@Unfolding Energy - mRNA 14.3527 kcal/mol@LB@Unfolding Energy - sRNA 12.939 kcal/mol@LB@@LB@Position - mRNA 194 -- 235@LB@Position - sRNA 70 -- 110@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 153 |
0.003576 |
0.1073 |
pa5013 |
ilvE |
-11.20 |
0.098760 |
213 -- 229 |
103 -- 120 |
branched-chain amino acid aminotransferase |
|
_____________212________________230\n_____________|__________________|\n5'-UCU...UGGCC_____________G____CUGGU...AUG-3'\n______________GAUCGUGAU_GGC_UGAU\n______________:|:||||||_:||_||||\n______________UUGGCACUA_UCG_ACUA\n3'-UUU...AGUUU_________A___G____CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
215 -- 221 |
112 -- 118 |
-19.7956 kcal/mol |
6.35284 kcal/mol |
2.24268 kcal/mol |
212 230@LB@ | |@LB@5'-UCU...UGGCC G CUGGU...AUG-3'@LB@ GAUCGUGAU GGC UGAU@LB@ :|:|||||| :|| ||||@LB@ UUGGCACUA UCG ACUA@LB@3'-UUU...AGUUU A G CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.7956 kcal/mol@LB@Unfolding Energy - mRNA 6.35284 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 40 |
0.0001908 |
0.02192 |
pa5015 |
aceE |
-12.88 |
0.038887 |
273 -- 297 |
101 -- 123 |
pyruvate dehydrogenase subunit E1 |
|
_____________272________________________298\n_____________|__________________________|\n5'-CCU...AAGGU________C_CUC_____________CCC-3'\n______________GAAGACCG_G___AUUA_CCUGAUGA\n______________:||:||||_|___||||_||||||||\n______________UUUUUGGC_C___UAAU_GGACUACU\n3'-UUU...CCCAG________A________C________CCUCU...GUU-5'\n_____________|__________________________|\n_____________124________________________100\n |
291 -- 297 |
101 -- 107 |
-21.2393 kcal/mol |
6.11337 kcal/mol |
2.24445 kcal/mol |
272 298@LB@ | |@LB@5'-CCU...AAGGU C CUC CCC-3'@LB@ GAAGACCG G AUUA CCUGAUGA@LB@ :||:|||| | |||| ||||||||@LB@ UUUUUGGC C UAAU GGACUACU@LB@3'-UUU...CCCAG A C CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2393 kcal/mol@LB@Unfolding Energy - mRNA 6.11337 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 273 -- 297@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 18 |
3.753e-05 |
0.009449 |
pa5036 |
gltB |
-9.24 |
0.251750 |
240 -- 259 |
103 -- 120 |
glutamate synthase subunit alpha |
|
_____________239__________________260\n_____________|____________________|\n5'-GAA...AGGAU_____CG__U__________CGCCC...AAA-3'\n______________AACUG__GA_UUGGCCUGAU\n______________|||:|__||_||:|||||||\n______________UUGGC__CU_AAUCGGACUA\n3'-UUU...AGUUU_____A______________CUCCU...GUU-5'\n_____________|____________________|\n_____________121__________________102\n |
253 -- 259 |
103 -- 109 |
-18.8705 kcal/mol |
7.38825 kcal/mol |
2.24268 kcal/mol |
239 260@LB@ | |@LB@5'-GAA...AGGAU CG U CGCCC...AAA-3'@LB@ AACUG GA UUGGCCUGAU@LB@ |||:| || ||:|||||||@LB@ UUGGC CU AAUCGGACUA@LB@3'-UUU...AGUUU A CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -18.8705 kcal/mol@LB@Unfolding Energy - mRNA 7.38825 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 103 -- 109@LB@ |
