| 186 |
0.004909 |
0.1213 |
pa3889 |
N/A |
-13.61 |
0.025105 |
195 -- 204 |
101 -- 110 |
ABC transporter |
|
_____________194________205\n_____________|__________|\n5'-GUC...AAGGA__________ACCGA...UCA-3'\n______________GGCCUGAUGA\n______________:|||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
198 -- 204 |
101 -- 107 |
-17.7978 kcal/mol |
2.07405 kcal/mol |
2.11196 kcal/mol |
194 205@LB@ | |@LB@5'-GUC...AAGGA ACCGA...UCA-3'@LB@ GGCCUGAUGA@LB@ :|||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -17.7978 kcal/mol@LB@Unfolding Energy - mRNA 2.07405 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 97 |
0.001341 |
0.06355 |
pa3929 |
cioB |
-12.35 |
0.052798 |
141 -- 190 |
33 -- 89 |
cyanide insensitive terminal oxidase |
|
_____________140____________________________________________________________191\n_____________|______________________________________________________________|\n5'-UCG...UCGAC______CA____G______________C__GCA_G____C______________GACAA___GAACU...UCU-3'\n______________GAAGAG__CGAC_GC__________CA_GC___A_CGGC_GA_C_CGCGACCAG_____GAG\n______________||||||__||||_||__________||_||___|_||||_||_|_|||||||||_____|||\n______________CUUCUC__GCUG_CG__________GU_CG___U_GCCG_CU_G_GCGCUGGUC_____CUC\n3'-UUU...UUAGA______AG____A__CACCCAGAGA_____AA__G____A__A_A_________AA______ACUGU...GUU-5'\n_____________|______________________________________________________________|\n_____________90_____________________________________________________________32\n |
176 -- 182 |
38 -- 44 |
-47.0211 kcal/mol |
15.6367 kcal/mol |
19.0341 kcal/mol |
140 191@LB@ | |@LB@5'-UCG...UCGAC CA G C GCA G C GACAA GAACU...UCU-3'@LB@ GAAGAG CGAC GC CA GC A CGGC GA C CGCGACCAG GAG@LB@ |||||| |||| || || || | |||| || | ||||||||| |||@LB@ CUUCUC GCUG CG GU CG U GCCG CU G GCGCUGGUC CUC@LB@3'-UUU...UUAGA AG A CACCCAGAGA AA G A A A AA ACUGU...GUU-5'@LB@ | |@LB@ 90 32@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -47.0211 kcal/mol@LB@Unfolding Energy - mRNA 15.6367 kcal/mol@LB@Unfolding Energy - sRNA 19.0341 kcal/mol@LB@@LB@Position - mRNA 141 -- 190@LB@Position - sRNA 33 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 74 |
0.0008152 |
0.04991 |
pa3942 |
tesB |
-9.59 |
0.215645 |
1 -- 36 |
40 -- 80 |
acyl-CoA thioesterase II |
|
______________1_________________________________________37\n______________|_________________________________________|\n___________5'-______C____A_______G__________CUA__A______CCCUG...AGC-3'\n______________GGCUGU_UGGG_____CGG__UAUCGGCUG___CU__CGACC\n______________|:|||:_||||_____|:|__||:||||||___||__|||||\n______________CUGACG_ACCC_____GUC__AUGGCCGAC___GA__GCUGG\n3'-UUU...UCAGG______C____AGAGA___GA_________UA___GC_____UCAAC...GUU-5'\n_____________|__________________________________________|\n_____________81_________________________________________39\n |
19 -- 25 |
51 -- 57 |
-37.7037 kcal/mol |
9.97985 kcal/mol |
18.133 kcal/mol |
1 37@LB@ | |@LB@ 5'- C A G CUA A CCCUG...AGC-3'@LB@ GGCUGU UGGG CGG UAUCGGCUG CU CGACC@LB@ |:|||: |||| |:| ||:|||||| || |||||@LB@ CUGACG ACCC GUC AUGGCCGAC GA GCUGG@LB@3'-UUU...UCAGG C AGAGA GA UA GC UCAAC...GUU-5'@LB@ | |@LB@ 81 39@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -37.7037 kcal/mol@LB@Unfolding Energy - mRNA 9.97985 kcal/mol@LB@Unfolding Energy - sRNA 18.133 kcal/mol@LB@@LB@Position - mRNA 1 -- 36@LB@Position - sRNA 40 -- 80@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 124 |
0.002337 |
0.08662 |
pa3949 |
N/A |
-9.36 |
0.238904 |
5 -- 33 |
38 -- 61 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________4_____________________________34\n_____________|_____________________________|\n_______5'-UGGC_____GA_________AGU__C_______GCGCA...GCA-3'\n______________CUUGC__CGGUUGAUC___UC_UGACCAG\n______________|||:|__|||:|||||___||_:||||||\n______________GAAUG__GCCGACUAG___AG_GCUGGUC\n3'-UUU...GAGUC_____________________C_______AACUC...GUU-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
27 -- 33 |
38 -- 44 |
-29.1049 kcal/mol |
8.08568 kcal/mol |
11.6624 kcal/mol |
4 34@LB@ | |@LB@ 5'-UGGC GA AGU C GCGCA...GCA-3'@LB@ CUUGC CGGUUGAUC UC UGACCAG@LB@ |||:| |||:||||| || :||||||@LB@ GAAUG GCCGACUAG AG GCUGGUC@LB@3'-UUU...GAGUC C AACUC...GUU-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -29.1049 kcal/mol@LB@Unfolding Energy - mRNA 8.08568 kcal/mol@LB@Unfolding Energy - sRNA 11.6624 kcal/mol@LB@@LB@Position - mRNA 5 -- 33@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 154 |
0.003595 |
0.1073 |
pa3974 |
ladS |
-15.87 |
0.005612 |
181 -- 233 |
43 -- 89 |
lost adherence sensor LadS |
|
_____________180_________________________________________________________234\n_____________|___________________________________________________________|\n5'-CUU...CGUUC____________________CA__AUG_______________UUCUCUUUCU_______UUGCC...CCA-3'\n______________GAGGAG_C__ACUGCG_GGG__UC___CGGC__ACUGGCUGA__________UCUUGCG\n______________||:|||_|__||||||_|||__||___|:||__||:||||||__________|||:|||\n______________CUUCUC_G__UGACGC_CCC__AG___GUCG__UGGCCGACU__________AGAGCGC\n3'-UUU...UUAGA______A_GC______A___AG__A______AA__________________________UGGUC...GUU-5'\n_____________|___________________________________________________________|\n_____________90__________________________________________________________42\n |
227 -- 233 |
43 -- 49 |
-49.9041 kcal/mol |
15.1092 kcal/mol |
18.9299 kcal/mol |
180 234@LB@ | |@LB@5'-CUU...CGUUC CA AUG UUCUCUUUCU UUGCC...CCA-3'@LB@ GAGGAG C ACUGCG GGG UC CGGC ACUGGCUGA UCUUGCG@LB@ ||:||| | |||||| ||| || |:|| ||:|||||| |||:|||@LB@ CUUCUC G UGACGC CCC AG GUCG UGGCCGACU AGAGCGC@LB@3'-UUU...UUAGA A GC A AG A AA UGGUC...GUU-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -49.9041 kcal/mol@LB@Unfolding Energy - mRNA 15.1092 kcal/mol@LB@Unfolding Energy - sRNA 18.9299 kcal/mol@LB@@LB@Position - mRNA 181 -- 233@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 127 |
0.002525 |
0.0912 |
pa3976 |
thiE |
-9.31 |
0.244259 |
189 -- 204 |
101 -- 123 |
thiamine-phosphate pyrophosphorylase |
|
_____________188_____________________205\n_____________|_______________________|\n5'-GCC...UCACU_______________________AACUG...GCC-3'\n______________GAGAGCC______AGCC_GAUGA\n______________:|:|:||______||||_|||||\n______________UUUUUGG______UCGG_CUACU\n3'-UUU...CCCAG_______CACUAA____A_____CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
189 -- 195 |
117 -- 123 |
-15.9836 kcal/mol |
4.42969 kcal/mol |
2.24445 kcal/mol |
188 205@LB@ | |@LB@5'-GCC...UCACU AACUG...GCC-3'@LB@ GAGAGCC AGCC GAUGA@LB@ :|:|:|| |||| |||||@LB@ UUUUUGG UCGG CUACU@LB@3'-UUU...CCCAG CACUAA A CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -15.9836 kcal/mol@LB@Unfolding Energy - mRNA 4.42969 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 52 |
0.0004019 |
0.03518 |
pa4012 |
N/A |
-10.34 |
0.152385 |
122 -- 132 |
100 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________121_________133\n_____________|___________|\n5'-CAU...CGAUG___________CGUUG...GCU-3'\n______________AGCCUGAUGGG\n______________|||||||||:|\n______________UCGGACUACUC\n3'-UUU...ACUAA___________CUCUA...GUU-5'\n_____________|___________|\n_____________111_________99\n |
126 -- 132 |
100 -- 106 |
-17.6316 kcal/mol |
5.13362 kcal/mol |
2.15723 kcal/mol |
121 133@LB@ | |@LB@5'-CAU...CGAUG CGUUG...GCU-3'@LB@ AGCCUGAUGGG@LB@ |||||||||:|@LB@ UCGGACUACUC@LB@3'-UUU...ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 111 99@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -17.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.13362 kcal/mol@LB@Unfolding Energy - sRNA 2.15723 kcal/mol@LB@@LB@Position - mRNA 122 -- 132@LB@Position - sRNA 100 -- 110@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 106 |
0.001743 |
0.07531 |
pa4019 |
N/A |
-13.63 |
0.024857 |
269 -- 289 |
98 -- 119 |
aromatic acid decarboxylase |
|
_____________268_____________________290\n_____________|_______________________|\n5'-CCG...CGCUU___C______________C____AGAGC...AGG-3'\n______________GCU__GAUU_GCCUGGUG_AGGA\n______________:|:__||||_|||||:||_||||\n______________UGG__CUAA_CGGACUAC_UCCU\n3'-UUU...GUUUU___CA____U_____________CUAUU...GUU-5'\n_____________|_______________________|\n_____________120_____________________97\n |
278 -- 284 |
102 -- 108 |
-22.0172 kcal/mol |
6.14115 kcal/mol |
2.25153 kcal/mol |
268 290@LB@ | |@LB@5'-CCG...CGCUU C C AGAGC...AGG-3'@LB@ GCU GAUU GCCUGGUG AGGA@LB@ :|: |||| |||||:|| ||||@LB@ UGG CUAA CGGACUAC UCCU@LB@3'-UUU...GUUUU CA U CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -13.63 kcal/mol@LB@Hybridization Energy -22.0172 kcal/mol@LB@Unfolding Energy - mRNA 6.14115 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 119 |
0.002082 |
0.07999 |
pa4053 |
ribE |
-9.84 |
0.193218 |
284 -- 298 |
103 -- 117 |
6 7-dimethyl-8-ribityllumazine synthase |
|
_____________283_____________299\n_____________|_______________|\n5'-UGC...UUCGU_____AA________CA-3'\n______________CGUGG__AGCCUGGU\n______________||||:__||||||:|\n______________GCACU__UCGGACUA\n3'-UUU...UUUUG_____AA________CUCCU...GUU-5'\n_____________|_______________|\n_____________118_____________102\n |
292 -- 298 |
103 -- 109 |
-17.5695 kcal/mol |
5.50648 kcal/mol |
2.23013 kcal/mol |
283 299@LB@ | |@LB@5'-UGC...UUCGU AA CA-3'@LB@ CGUGG AGCCUGGU@LB@ ||||: ||||||:|@LB@ GCACU UCGGACUA@LB@3'-UUU...UUUUG AA CUCCU...GUU-5'@LB@ | |@LB@ 118 102@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -17.5695 kcal/mol@LB@Unfolding Energy - mRNA 5.50648 kcal/mol@LB@Unfolding Energy - sRNA 2.23013 kcal/mol@LB@@LB@Position - mRNA 284 -- 298@LB@Position - sRNA 103 -- 117@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 58 |
0.0005047 |
0.0395 |
pa4066 |
N/A |
-14.62 |
0.013175 |
166 -- 238 |
44 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________165______________________________________________________________________________________239\n_____________|________________________________________________________________________________________|\n5'-AUC...AUGGC____C___CC_________CCC_______U__C__________AU______CUCCC__ACC_______C___________________CCUGC...UGA-3'\n______________CUGU_GAU__GCCU_AUGA___GGAGAUA_UC________CCG__GCUGCG_____UG___GUC_CUC____UGCUGGCU___UUCGC\n______________|:||_|||__||||_||||___|||||||_||________|||__:|||||_____||___|||_|||____|:|:||||___:||||\n______________GGCA_CUA__CGGA_UACU___CCUCUAU_AG________GGC__UGACGC_____AC___CAG_GAG____AUGGCCGA___GAGCG\n3'-UUU...UUUUU________AU____C______________U__ACUUCUCA__________________C_____A___UCGA________CUA_____CUGGU...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________43\n |
227 -- 233 |
52 -- 58 |
-54.201 kcal/mol |
16.2747 kcal/mol |
23.3102 kcal/mol |
165 239@LB@ | |@LB@5'-AUC...AUGGC C CC CCC U C AU CUCCC ACC C CCUGC...UGA-3'@LB@ CUGU GAU GCCU AUGA GGAGAUA UC CCG GCUGCG UG GUC CUC UGCUGGCU UUCGC@LB@ |:|| ||| |||| |||| ||||||| || ||| :||||| || ||| ||| |:|:|||| :||||@LB@ GGCA CUA CGGA UACU CCUCUAU AG GGC UGACGC AC CAG GAG AUGGCCGA GAGCG@LB@3'-UUU...UUUUU AU C U ACUUCUCA C A UCGA CUA CUGGU...GUU-5'@LB@ | |@LB@ 119 43@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -54.201 kcal/mol@LB@Unfolding Energy - mRNA 16.2747 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 166 -- 238@LB@Position - sRNA 44 -- 118@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
