| 165 |
0.004162 |
0.1159 |
pa1850 |
N/A |
-12.78 |
0.041348 |
242 -- 255 |
104 -- 117 |
transcriptional regulator |
|
_____________241____________256\n_____________|______________|\n5'-AUA...CCCGA______G_______ACGUG...AAC-3'\n______________CGUGAU_AGCCUGG\n______________||||||_||||||:\n______________GCACUA_UCGGACU\n3'-UUU...UUUUG______A_______ACUCC...GUU-5'\n_____________|______________|\n_____________118____________103\n |
249 -- 255 |
104 -- 110 |
-19.8167 kcal/mol |
4.81117 kcal/mol |
2.2292 kcal/mol |
241 256@LB@ | |@LB@5'-AUA...CCCGA G ACGUG...AAC-3'@LB@ CGUGAU AGCCUGG@LB@ |||||| ||||||:@LB@ GCACUA UCGGACU@LB@3'-UUU...UUUUG A ACUCC...GUU-5'@LB@ | |@LB@ 118 103@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -19.8167 kcal/mol@LB@Unfolding Energy - mRNA 4.81117 kcal/mol@LB@Unfolding Energy - sRNA 2.2292 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 104 -- 117@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 113 |
0.001932 |
0.07857 |
pa1964 |
N/A |
-9.53 |
0.221537 |
258 -- 274 |
103 -- 120 |
ABC-F family ATPase |
|
_____________257________________275\n_____________|__________________|\n5'-GCA...ACGGC_____CUAC_________CGGCG...CGA-3'\n______________AACCG_____GGCCUGAU\n______________|||||_____:|||||||\n______________UUGGC_____UCGGACUA\n3'-UUU...AGUUU_____ACUAA________CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
268 -- 274 |
103 -- 109 |
-16.8873 kcal/mol |
5.11311 kcal/mol |
2.24268 kcal/mol |
257 275@LB@ | |@LB@5'-GCA...ACGGC CUAC CGGCG...CGA-3'@LB@ AACCG GGCCUGAU@LB@ ||||| :|||||||@LB@ UUGGC UCGGACUA@LB@3'-UUU...AGUUU ACUAA CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -16.8873 kcal/mol@LB@Unfolding Energy - mRNA 5.11311 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 175 |
0.004467 |
0.1171 |
pa2047 |
N/A |
-7.63 |
0.467709 |
171 -- 177 |
103 -- 109 |
transcriptional regulator |
|
_____________170_____178\n_____________|_______|\n5'-CCC...UGCUU_______CCUGC...CCG-3'\n______________GCCUGAU\n______________|||||||\n______________CGGACUA\n3'-UUU...CUAAU_______CUCCU...GUU-5'\n_____________|_______|\n_____________110_____102\n |
171 -- 177 |
103 -- 109 |
-11.5321 kcal/mol |
1.79595 kcal/mol |
2.10421 kcal/mol |
170 178@LB@ | |@LB@5'-CCC...UGCUU CCUGC...CCG-3'@LB@ GCCUGAU@LB@ |||||||@LB@ CGGACUA@LB@3'-UUU...CUAAU CUCCU...GUU-5'@LB@ | |@LB@ 110 102@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -11.5321 kcal/mol@LB@Unfolding Energy - mRNA 1.79595 kcal/mol@LB@Unfolding Energy - sRNA 2.10421 kcal/mol@LB@@LB@Position - mRNA 171 -- 177@LB@Position - sRNA 103 -- 109@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 59 |
0.0005101 |
0.0395 |
pa2173a |
N/A |
-13.53 |
0.026409 |
139 -- 150 |
107 -- 119 |
|
|
_____________138___________151\n_____________|_____________|\n5'-CAA...AACCU_____________AUGGG...CCC-3'\n______________GCCGUGAU_AGCC\n______________:|||||||_||||\n______________UGGCACUA_UCGG\n3'-UUU...GUUUU________A____ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
140 -- 146 |
112 -- 118 |
-18.4805 kcal/mol |
2.71645 kcal/mol |
2.23484 kcal/mol |
138 151@LB@ | |@LB@5'-CAA...AACCU AUGGG...CCC-3'@LB@ GCCGUGAU AGCC@LB@ :||||||| ||||@LB@ UGGCACUA UCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -18.4805 kcal/mol@LB@Unfolding Energy - mRNA 2.71645 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 110 |
0.00181 |
0.07562 |
pa2449 |
N/A |
-19.06 |
0.000430 |
48 -- 69 |
99 -- 122 |
transcriptional regulator |
|
_____________47_______________________70\n_____________|________________________|\n5'-UGC...UGACC___________________C____GCGAC...UGG-3'\n______________GAAACCGUGAU_GGCC_GA_GAGG\n______________:||||||||||_:|||_||_||||\n______________UUUUGGCACUA_UCGG_CU_CUCC\n3'-UUU...CCAGU___________A____A__A____UCUAU...GUU-5'\n_____________|________________________|\n_____________123______________________98\n |
52 -- 58 |
112 -- 118 |
-29.2814 kcal/mol |
7.97339 kcal/mol |
2.25034 kcal/mol |
47 70@LB@ | |@LB@5'-UGC...UGACC C GCGAC...UGG-3'@LB@ GAAACCGUGAU GGCC GA GAGG@LB@ :|||||||||| :||| || ||||@LB@ UUUUGGCACUA UCGG CU CUCC@LB@3'-UUU...CCAGU A A A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -19.06 kcal/mol@LB@Hybridization Energy -29.2814 kcal/mol@LB@Unfolding Energy - mRNA 7.97339 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 48 -- 69@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 181 |
0.004727 |
0.1199 |
pa2509 |
catB |
-12.44 |
0.050225 |
208 -- 226 |
106 -- 121 |
muconate cycloisomerase I |
|
_____________207_________________227\n_____________|___________________|\n5'-GGC...GAGCC__________CCAA_____CGAGU...CCC-3'\n______________AAGCCGUGAU____AGCCU\n______________||:|||||||____|||||\n______________UUUGGCACUA____UCGGA\n3'-UUU...CAGUU__________A________CUACU...GUU-5'\n_____________|___________________|\n_____________122_________________105\n |
211 -- 217 |
112 -- 118 |
-19.0549 kcal/mol |
4.37421 kcal/mol |
2.24058 kcal/mol |
207 227@LB@ | |@LB@5'-GGC...GAGCC CCAA CGAGU...CCC-3'@LB@ AAGCCGUGAU AGCCU@LB@ ||:||||||| |||||@LB@ UUUGGCACUA UCGGA@LB@3'-UUU...CAGUU A CUACU...GUU-5'@LB@ | |@LB@ 122 105@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 4.37421 kcal/mol@LB@Unfolding Energy - sRNA 2.24058 kcal/mol@LB@@LB@Position - mRNA 208 -- 226@LB@Position - sRNA 106 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 112 -- 118@LB@ |
