| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 38 |
0.0001678 |
0.02029 |
pa4131 |
N/A |
-10.32 |
0.153559 |
164 -- 172 |
74 -- 82 |
iron-sulfur protein |
|
_____________163_______173\n_____________|_________|\n5'-CUC...GGGAA_________CCCCU...GCG-3'\n______________CCGGCUGCG\n______________|||:|||||\n______________GGCUGACGC\n3'-UUU...UCUCA_________ACCCA...GUU-5'\n_____________|_________|\n_____________83________73\n |
166 -- 172 |
74 -- 80 |
-17.7171 kcal/mol |
3.29242 kcal/mol |
4.10111 kcal/mol |
163 173@LB@ | |@LB@5'-CUC...GGGAA CCCCU...GCG-3'@LB@ CCGGCUGCG@LB@ |||:|||||@LB@ GGCUGACGC@LB@3'-UUU...UCUCA ACCCA...GUU-5'@LB@ | |@LB@ 83 73@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.7171 kcal/mol@LB@Unfolding Energy - mRNA 3.29242 kcal/mol@LB@Unfolding Energy - sRNA 4.10111 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 74 -- 82@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 145 |
0.003161 |
0.1002 |
pa4147 |
acoR |
-9.16 |
0.260996 |
230 -- 255 |
98 -- 121 |
transcriptional regulator AcoR |
pa4021 |
_____________229_________________________256\n_____________|___________________________|\n5'-UAG...CAUGU________UC_____G__UCC______ACGCC...UCG-3'\n______________GGACUGUG___AGCC_UG___UGAGGA\n______________::||:|||___||||_||___||||||\n______________UUUGGCAC___UCGG_AC___ACUCCU\n3'-UUU...CAGUU________UAA_______U________CUAUU...GUU-5'\n_____________|___________________________|\n_____________122_________________________97\n |
231 -- 237 |
114 -- 120 |
-22.6885 kcal/mol |
11.2814 kcal/mol |
2.25186 kcal/mol |
229 256@LB@ | |@LB@5'-UAG...CAUGU UC G UCC ACGCC...UCG-3'@LB@ GGACUGUG AGCC UG UGAGGA@LB@ ::||:||| |||| || ||||||@LB@ UUUGGCAC UCGG AC ACUCCU@LB@3'-UUU...CAGUU UAA U CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -22.6885 kcal/mol@LB@Unfolding Energy - mRNA 11.2814 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 114 -- 120@LB@ |
| 105 |
0.00174 |
0.07531 |
pa4182 |
N/A |
-13.56 |
0.025913 |
222 -- 265 |
39 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221__________________________________________________266\n_____________|____________________________________________________|\n5'-ACG...AUUUC____________C___CA____________GCA__C__________G_____UCCGC...CGG-3'\n______________GAAGAGUCCGAC__CG__GG_C_____GCU___CG_GCUGAUC_CG_GACUA\n______________||||||||||||__||__||_|_____|||___||_|||||||_||_|||:|\n______________CUUCUCAGGCUG__GC__CC_G_____CGA___GC_CGACUAG_GC_CUGGU\n3'-UUU...UUAGA____________AC__AC__A_AGAGU___AUG__________A__G_____CAACU...GUU-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________38\n |
251 -- 257 |
48 -- 54 |
-52.115 kcal/mol |
19.5257 kcal/mol |
19.0319 kcal/mol |
221 266@LB@ | |@LB@5'-ACG...AUUUC C CA GCA C G UCCGC...CGG-3'@LB@ GAAGAGUCCGAC CG GG C GCU CG GCUGAUC CG GACUA@LB@ |||||||||||| || || | ||| || ||||||| || |||:|@LB@ CUUCUCAGGCUG GC CC G CGA GC CGACUAG GC CUGGU@LB@3'-UUU...UUAGA AC AC A AGAGU AUG A G CAACU...GUU-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -52.115 kcal/mol@LB@Unfolding Energy - mRNA 19.5257 kcal/mol@LB@Unfolding Energy - sRNA 19.0319 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 25 |
6.377e-05 |
0.01172 |
pa4235 |
bfrA |
-17.70 |
0.001383 |
58 -- 83 |
99 -- 122 |
bacterioferritin |
|
_____________57__________________________84\n_____________|___________________________|\n5'-CCU...GGCCU_______GAC_________________CCCCC...AGG-3'\n______________GAAGCUG___UGA_UGGCCUGAUGAGG\n______________:||:|:|___|||_|:|||||||||||\n______________UUUUGGC___ACU_AUCGGACUACUCC\n3'-UUU...CCAGU_____________A_____________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
77 -- 83 |
99 -- 105 |
-30.6433 kcal/mol |
10.6928 kcal/mol |
2.25034 kcal/mol |
57 84@LB@ | |@LB@5'-CCU...GGCCU GAC CCCCC...AGG-3'@LB@ GAAGCUG UGA UGGCCUGAUGAGG@LB@ :||:|:| ||| |:|||||||||||@LB@ UUUUGGC ACU AUCGGACUACUCC@LB@3'-UUU...CCAGU A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -30.6433 kcal/mol@LB@Unfolding Energy - mRNA 10.6928 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 58 -- 83@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 78 |
0.000864 |
0.05078 |
pa4263 |
rplC |
-13.85 |
0.021626 |
50 -- 71 |
101 -- 122 |
50S ribosomal protein L3 |
|
_____________49_______________________72\n_____________|________________________|\n5'-CGA...CGGAU________C_______G_______AGCUC...AUC-3'\n______________AAAACCGU_GAU__GC_CUGAUGA\n______________||||||||_|||__||_|||||||\n______________UUUUGGCA_CUA__CG_GACUACU\n3'-UUU...CCAGU____________AU__________CCUCU...GUU-5'\n_____________|________________________|\n_____________123______________________100\n |
65 -- 71 |
101 -- 107 |
-22.5702 kcal/mol |
6.47727 kcal/mol |
2.24427 kcal/mol |
49 72@LB@ | |@LB@5'-CGA...CGGAU C G AGCUC...AUC-3'@LB@ AAAACCGU GAU GC CUGAUGA@LB@ |||||||| ||| || |||||||@LB@ UUUUGGCA CUA CG GACUACU@LB@3'-UUU...CCAGU AU CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -22.5702 kcal/mol@LB@Unfolding Energy - mRNA 6.47727 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 189 |
0.005044 |
0.1227 |
pa4284 |
recB |
-12.92 |
0.038081 |
40 -- 56 |
70 -- 89 |
exodeoxyribonuclease V subunit beta |
|
_____________39___________________57\n_____________|____________________|\n5'-CCC...ACGAG____________A_______GGGCG...UCA-3'\n______________GGAGGGUUCGGC____UGGG\n______________|:||:||:||:|____||||\n______________CUUCUCAGGCUG____ACCC\n3'-UUU...UUAGA____________ACGC____AGAGA...GUU-5'\n_____________|____________________|\n_____________90___________________69\n |
45 -- 51 |
78 -- 84 |
-22.2148 kcal/mol |
3.43278 kcal/mol |
5.86471 kcal/mol |
39 57@LB@ | |@LB@5'-CCC...ACGAG A GGGCG...UCA-3'@LB@ GGAGGGUUCGGC UGGG@LB@ |:||:||:||:| ||||@LB@ CUUCUCAGGCUG ACCC@LB@3'-UUU...UUAGA ACGC AGAGA...GUU-5'@LB@ | |@LB@ 90 69@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -22.2148 kcal/mol@LB@Unfolding Energy - mRNA 3.43278 kcal/mol@LB@Unfolding Energy - sRNA 5.86471 kcal/mol@LB@@LB@Position - mRNA 40 -- 56@LB@Position - sRNA 70 -- 89@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 122 |
0.002226 |
0.08331 |
pa4286 |
N/A |
-14.46 |
0.014621 |
171 -- 194 |
98 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________170_______________________195\n_____________|_________________________|\n5'-GGU...GAGCC________CC________AA_____AGAAU...GGC-3'\n______________GAGCCGUG___AGCCUGG__GAGGA\n______________:|:|||||___||||||:__|||||\n______________UUUGGCAC___UCGGACU__CUCCU\n3'-UUU...CAGUU________UAA_______A______CUAUU...GUU-5'\n_____________|_________________________|\n_____________122_______________________97\n |
181 -- 187 |
104 -- 110 |
-28.256 kcal/mol |
11.5428 kcal/mol |
2.25186 kcal/mol |
170 195@LB@ | |@LB@5'-GGU...GAGCC CC AA AGAAU...GGC-3'@LB@ GAGCCGUG AGCCUGG GAGGA@LB@ :|:||||| ||||||: |||||@LB@ UUUGGCAC UCGGACU CUCCU@LB@3'-UUU...CAGUU UAA A CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -28.256 kcal/mol@LB@Unfolding Energy - mRNA 11.5428 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 125 |
0.002365 |
0.08694 |
pa4303 |
tadZ |
-11.60 |
0.080140 |
12 -- 30 |
101 -- 120 |
class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known). |
|
_____________11___________________31\n_____________|____________________|\n5'-UGG...AGGAC_____C__GCU_________UCGUC...GCG-3'\n______________GACCG_GA___G_CUGAUGA\n______________:||||_||___|_|||||||\n______________UUGGC_CU___C_GACUACU\n3'-UUU...AGUUU_____A__AAU_G_______CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
24 -- 30 |
101 -- 107 |
-18.3231 kcal/mol |
4.48403 kcal/mol |
2.2437 kcal/mol |
11 31@LB@ | |@LB@5'-UGG...AGGAC C GCU UCGUC...GCG-3'@LB@ GACCG GA G CUGAUGA@LB@ :|||| || | |||||||@LB@ UUGGC CU C GACUACU@LB@3'-UUU...AGUUU A AAU G CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -18.3231 kcal/mol@LB@Unfolding Energy - mRNA 4.48403 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 12 -- 30@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 104 |
0.00171 |
0.07531 |
pa4333 |
N/A |
-8.52 |
0.338548 |
151 -- 157 |
40 -- 46 |
fumarase |
|
_____________150_____158\n_____________|_______|\n5'-UAG...GGCUC_______CUGCC...AUG-3'\n______________CGUGACC\n______________||:||||\n______________GCGCUGG\n3'-UUU...CUAGA_______UCAAC...GUU-5'\n_____________|_______|\n_____________47______39\n |
151 -- 157 |
40 -- 46 |
-12.3245 kcal/mol |
0.149051 kcal/mol |
3.65718 kcal/mol |
150 158@LB@ | |@LB@5'-UAG...GGCUC CUGCC...AUG-3'@LB@ CGUGACC@LB@ ||:||||@LB@ GCGCUGG@LB@3'-UUU...CUAGA UCAAC...GUU-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -12.3245 kcal/mol@LB@Unfolding Energy - mRNA 0.149051 kcal/mol@LB@Unfolding Energy - sRNA 3.65718 kcal/mol@LB@@LB@Position - mRNA 151 -- 157@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 40 -- 46@LB@ |
