| 115 |
0.001984 |
0.07883 |
pa3002 |
mfd |
-15.72 |
0.006234 |
203 -- 232 |
53 -- 84 |
transcription-repair coupling factor |
|
_____________202_______________________________233\n_____________|_________________________________|\n5'-GAU...CCCGU_____U_______C______C____C_______CAGCG...CCG-3'\n______________GUCCG_ACUGCGU____UUC_CAGC_UGCCGGC\n______________|||||_|||||||____:||_||||_|:|||||\n______________CAGGC_UGACGCA____GAG_GUCG_AUGGCCG\n3'-UUU...CUUCU_____________CCCA___A____A_______ACUAG...GUU-5'\n_____________|_________________________________|\n_____________85________________________________52\n |
226 -- 232 |
53 -- 59 |
-40.2071 kcal/mol |
10.3261 kcal/mol |
14.162 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...CCCGU U C C C CAGCG...CCG-3'@LB@ GUCCG ACUGCGU UUC CAGC UGCCGGC@LB@ ||||| ||||||| :|| |||| |:|||||@LB@ CAGGC UGACGCA GAG GUCG AUGGCCG@LB@3'-UUU...CUUCU CCCA A A ACUAG...GUU-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -40.2071 kcal/mol@LB@Unfolding Energy - mRNA 10.3261 kcal/mol@LB@Unfolding Energy - sRNA 14.162 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 152 |
0.003562 |
0.1073 |
pa3096 |
xcpY |
-9.37 |
0.238148 |
248 -- 259 |
98 -- 110 |
type II secretion system protein L |
|
_____________247___________260\n_____________|_____________|\n5'-ACC...GCGGG_____________ACUGG...GCG-3'\n______________GGCC_GAUGGGGA\n______________:|||_||||:|||\n______________UCGG_CUACUCCU\n3'-UUU...ACUAA____A________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
253 -- 259 |
98 -- 104 |
-17.5774 kcal/mol |
6.04509 kcal/mol |
2.16105 kcal/mol |
247 260@LB@ | |@LB@5'-ACC...GCGGG ACUGG...GCG-3'@LB@ GGCC GAUGGGGA@LB@ :||| ||||:|||@LB@ UCGG CUACUCCU@LB@3'-UUU...ACUAA A CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -17.5774 kcal/mol@LB@Unfolding Energy - mRNA 6.04509 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 248 -- 259@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 39 |
0.0001834 |
0.02162 |
pa3120 |
leuD |
-14.73 |
0.012246 |
171 -- 252 |
39 -- 118 |
isopropylmalate isomerase small subunit |
|
_____________170________________________________________________________________________________________253\n_____________|__________________________________________________________________________________________|\n5'-GGC...GAUGU___C_A____CUC______G___AACC_______AACCCUAUAC__A___GA_C________G________________A__________ACGUC...UCA-3'\n______________CCG_G_AUUG___GCCUGA_GAG____GAGAUGA__________CC_GAC__C___GGUCUC_UC_GCU__CC_GCUGG__UCGCG_CCA\n______________|||_|_|||:___||||||_|||____|||||:|__________||_|||__|___||||||_||_|||__||_||||:__|||||_|||\n______________GGC_C_UAAU___CGGACU_CUC____CUCUAUU__________GG_CUG__G___CCAGAG_AG_CGA__GG_CGACU__AGCGC_GGU\n3'-UUU...UUUUU___A_______________A______________AGACUUCUCA______AC_CAC_________U___AU__C_____AG_____U___CAACU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________119________________________________________________________________________________________38\n |
198 -- 204 |
93 -- 99 |
-62.4738 kcal/mol |
24.3406 kcal/mol |
23.4063 kcal/mol |
170 253@LB@ | |@LB@5'-GGC...GAUGU C A CUC G AACC AACCCUAUAC A GA C G A ACGUC...UCA-3'@LB@ CCG G AUUG GCCUGA GAG GAGAUGA CC GAC C GGUCUC UC GCU CC GCUGG UCGCG CCA@LB@ ||| | |||: |||||| ||| |||||:| || ||| | |||||| || ||| || ||||: ||||| |||@LB@ GGC C UAAU CGGACU CUC CUCUAUU GG CUG G CCAGAG AG CGA GG CGACU AGCGC GGU@LB@3'-UUU...UUUUU A A AGACUUCUCA AC CAC U AU C AG U CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -62.4738 kcal/mol@LB@Unfolding Energy - mRNA 24.3406 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 171 -- 252@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 93 -- 99@LB@ |
| 84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 163 |
0.004151 |
0.1159 |
pa3263 |
N/A |
-13.17 |
0.032863 |
133 -- 150 |
104 -- 121 |
recombination associated protein RdgC |
|
_____________132________________151\n_____________|__________________|\n5'-GUA...GCGAC______G___________GCCGC...CCU-3'\n______________GGACCG_GGUUGGCCUGA\n______________::||||_|:||:||||||\n______________UUUGGC_CUAAUCGGACU\n3'-UUU...CAGUU______A___________ACUCC...GUU-5'\n_____________|__________________|\n_____________122________________103\n |
144 -- 150 |
104 -- 110 |
-25.1519 kcal/mol |
9.74439 kcal/mol |
2.24203 kcal/mol |
132 151@LB@ | |@LB@5'-GUA...GCGAC G GCCGC...CCU-3'@LB@ GGACCG GGUUGGCCUGA@LB@ ::|||| |:||:||||||@LB@ UUUGGC CUAAUCGGACU@LB@3'-UUU...CAGUU A ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.1519 kcal/mol@LB@Unfolding Energy - mRNA 9.74439 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 13 |
1.26e-05 |
0.004211 |
pa3276 |
N/A |
-14.47 |
0.014594 |
182 -- 242 |
38 -- 108 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________181______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...UCCGU____UUCU____UACCC___U_________AUCCAUC_____A_______________C_____________CCGGG...ACA-3'\n______________UCUG____GGAG_____CUG_GGAGUCUGA________GUCU__________UGGCUG_AUC_CGCGACUGG\n______________:|||____||||_____|||_:|||||:||________||||__________:|||||_|||_||||||::|\n______________GGAC____CCUC_____GAC_UCUCAGGCU________CAGA__________GCCGAC_UAG_GCGCUGGUC\n3'-UUU...UAAUC____UACU____UAUUA___U_________GACGCACC____GAGUCGAAUG__________A_________AACUC...GUU-5'\n_____________|________________________________________________________________________|\n_____________109______________________________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-54.8405 kcal/mol |
17.042 kcal/mol |
23.3354 kcal/mol |
181 243@LB@ | |@LB@5'-CUU...UCCGU UUCU UACCC U AUCCAUC A C CCGGG...ACA-3'@LB@ UCUG GGAG CUG GGAGUCUGA GUCU UGGCUG AUC CGCGACUGG@LB@ :||| |||| ||| :|||||:|| |||| :||||| ||| ||||||::|@LB@ GGAC CCUC GAC UCUCAGGCU CAGA GCCGAC UAG GCGCUGGUC@LB@3'-UUU...UAAUC UACU UAUUA U GACGCACC GAGUCGAAUG A AACUC...GUU-5'@LB@ | |@LB@ 109 37@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -54.8405 kcal/mol@LB@Unfolding Energy - mRNA 17.042 kcal/mol@LB@Unfolding Energy - sRNA 23.3354 kcal/mol@LB@@LB@Position - mRNA 182 -- 242@LB@Position - sRNA 38 -- 108@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 171 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
