| 20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 198 |
0.005468 |
0.1268 |
pa5463 |
N/A |
-11.00 |
0.109950 |
289 -- 298 |
38 -- 47 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________288________299\n_____________|__________|\n5'-GUU...GGUGG__________CA-3'\n______________UCGCGACCAG\n______________||||||||||\n______________AGCGCUGGUC\n3'-UUU...ACUAG__________AACUC...GUU-5'\n_____________|__________|\n_____________48_________37\n |
292 -- 298 |
38 -- 44 |
-19.1199 kcal/mol |
4.44679 kcal/mol |
3.68214 kcal/mol |
288 299@LB@ | |@LB@5'-GUU...GGUGG CA-3'@LB@ UCGCGACCAG@LB@ ||||||||||@LB@ AGCGCUGGUC@LB@3'-UUU...ACUAG AACUC...GUU-5'@LB@ | |@LB@ 48 37@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.1199 kcal/mol@LB@Unfolding Energy - mRNA 4.44679 kcal/mol@LB@Unfolding Energy - sRNA 3.68214 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 38 -- 47@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 137 |
0.002719 |
0.09122 |
pa5476 |
citA |
-9.77 |
0.199491 |
137 -- 148 |
71 -- 82 |
citrate transporter |
pa0703 pa4343 |
_____________136__________149\n_____________|____________|\n5'-UCG...CGUAC___C________CCAUC...CCG-3'\n______________CCG_CUGCGUGG\n______________|||_||||||||\n______________GGC_GACGCACC\n3'-UUU...UCUCA___U________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
142 -- 148 |
71 -- 77 |
-20.5392 kcal/mol |
6.66778 kcal/mol |
4.10469 kcal/mol |
136 149@LB@ | |@LB@5'-UCG...CGUAC C CCAUC...CCG-3'@LB@ CCG CUGCGUGG@LB@ ||| ||||||||@LB@ GGC GACGCACC@LB@3'-UUU...UCUCA U CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -20.5392 kcal/mol@LB@Unfolding Energy - mRNA 6.66778 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 137 -- 148@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 2 |
9.847e-10 |
2.263e-06 |
pa5490 |
cc4 |
-23.49 |
0.000003 |
181 -- 254 |
56 -- 120 |
cytochrome C4 |
|
_____________180___________________________________________________________________________255\n_____________|_____________________________________________________________________________|\n5'-ACC...CCCUU______AAUUG______________ACAAACU____CGU___________U__ACCC_______GAC___C______CAUGC...UAU-3'\n______________AGCCGU_____GAUUAG_CUGAUGA________UCU___GAGUCUG_CUG_UG____UGGGUCU___CGG_CUUGCC\n______________|:||||_____||||||_|||||||________|||___|||||:|_|||_:|____|||||||___|:|_|||:||\n______________UUGGCA_____CUAAUC_GACUACU________AGA___CUCAGGC_GAC_GC____ACCCAGA___GUC_GAAUGG\n3'-UUU...AGUUU_________________G_______CCUCUAUU___CUU_______U_________________GA___________CCGAC...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________121___________________________________________________________________________55\n |
235 -- 241 |
67 -- 73 |
-59.1342 kcal/mol |
19.5582 kcal/mol |
16.0942 kcal/mol |
180 255@LB@ | |@LB@5'-ACC...CCCUU AAUUG ACAAACU CGU U ACCC GAC C CAUGC...UAU-3'@LB@ AGCCGU GAUUAG CUGAUGA UCU GAGUCUG CUG UG UGGGUCU CGG CUUGCC@LB@ |:|||| |||||| ||||||| ||| |||||:| ||| :| ||||||| |:| |||:||@LB@ UUGGCA CUAAUC GACUACU AGA CUCAGGC GAC GC ACCCAGA GUC GAAUGG@LB@3'-UUU...AGUUU G CCUCUAUU CUU U GA CCGAC...GUU-5'@LB@ | |@LB@ 121 55@LB@@LB@@LB@Energy -23.49 kcal/mol@LB@Hybridization Energy -59.1342 kcal/mol@LB@Unfolding Energy - mRNA 19.5582 kcal/mol@LB@Unfolding Energy - sRNA 16.0942 kcal/mol@LB@@LB@Position - mRNA 181 -- 254@LB@Position - sRNA 56 -- 120@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 141 |
0.002959 |
0.09644 |
pa5519 |
N/A |
-12.18 |
0.058415 |
260 -- 272 |
100 -- 118 |
acyl-CoA thioesterase |
pa2693 |
_____________259_________________273\n_____________|___________________|\n5'-GGG...CCCGC___________________AGAAA...ACA-3'\n______________CCGU______CCUGAUGAG\n______________||||______|||||||||\n______________GGCA______GGACUACUC\n3'-UUU...UUUUU____CUAAUC_________CUCUA...GUU-5'\n_____________|___________________|\n_____________119_________________99\n |
266 -- 272 |
100 -- 106 |
-18.4857 kcal/mol |
4.06476 kcal/mol |
2.24889 kcal/mol |
259 273@LB@ | |@LB@5'-GGG...CCCGC AGAAA...ACA-3'@LB@ CCGU CCUGAUGAG@LB@ |||| |||||||||@LB@ GGCA GGACUACUC@LB@3'-UUU...UUUUU CUAAUC CUCUA...GUU-5'@LB@ | |@LB@ 119 99@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -18.4857 kcal/mol@LB@Unfolding Energy - mRNA 4.06476 kcal/mol@LB@Unfolding Energy - sRNA 2.24889 kcal/mol@LB@@LB@Position - mRNA 260 -- 272@LB@Position - sRNA 100 -- 118@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 82 |
0.000993 |
0.05566 |
pa5549 |
glmS |
-14.85 |
0.011343 |
179 -- 208 |
71 -- 110 |
glucosamine--fructose-6-phosphate aminotransferase |
|
_____________178______________________________________209\n_____________|________________________________________|\n5'-CCG...GUCGA_______A__________________CC__A_________AAUCG...GCG-3'\n______________GGCCUGA__AGGAGA_______AAGA__CC___UGUGUGG\n______________:||||||__||||||_______||||__||___||:||||\n______________UCGGACU__UCCUCU_______UUCU__GG___ACGCACC\n3'-UUU...ACUAA_______AC______AUUAGAC____CA__CUG_______CAGAG...GUU-5'\n_____________|________________________________________|\n_____________111______________________________________70\n |
202 -- 208 |
71 -- 77 |
-33.9361 kcal/mol |
6.17828 kcal/mol |
12.9138 kcal/mol |
178 209@LB@ | |@LB@5'-CCG...GUCGA A CC A AAUCG...GCG-3'@LB@ GGCCUGA AGGAGA AAGA CC UGUGUGG@LB@ :|||||| |||||| |||| || ||:||||@LB@ UCGGACU UCCUCU UUCU GG ACGCACC@LB@3'-UUU...ACUAA AC AUUAGAC CA CUG CAGAG...GUU-5'@LB@ | |@LB@ 111 70@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -33.9361 kcal/mol@LB@Unfolding Energy - mRNA 6.17828 kcal/mol@LB@Unfolding Energy - sRNA 12.9138 kcal/mol@LB@@LB@Position - mRNA 179 -- 208@LB@Position - sRNA 71 -- 110@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 150 |
0.003458 |
0.106 |
pa5558 |
atpF |
-11.25 |
0.096505 |
215 -- 228 |
107 -- 120 |
ATP synthase subunit B |
|
_____________214____________229\n_____________|______________|\n5'-CUC...AAUGC____C_________AGUCC...UGC-3'\n______________AACC_UGAUUGGCC\n______________||||_|||||:|||\n______________UUGG_ACUAAUCGG\n3'-UUU...AGUUU____C_________ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
222 -- 228 |
107 -- 113 |
-18.4292 kcal/mol |
4.95427 kcal/mol |
2.2351 kcal/mol |
214 229@LB@ | |@LB@5'-CUC...AAUGC C AGUCC...UGC-3'@LB@ AACC UGAUUGGCC@LB@ |||| |||||:|||@LB@ UUGG ACUAAUCGG@LB@3'-UUU...AGUUU C ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -18.4292 kcal/mol@LB@Unfolding Energy - mRNA 4.95427 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 107 -- 113@LB@ |
