172 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
173 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
71 |
0.000767 |
0.0493 |
pa3381 |
N/A |
-11.39 |
0.089379 |
127 -- 140 |
103 -- 116 |
transcriptional regulator |
|
_____________126____________141\n_____________|______________|\n5'-UCC...UCGUG_____G________CGACG...CCG-3'\n______________GUGGU_AGCCUGAU\n______________|||:|_||||||||\n______________CACUA_UCGGACUA\n3'-UUU...UUUGG_____A________CUCCU...GUU-5'\n_____________|______________|\n_____________117____________102\n |
134 -- 140 |
103 -- 109 |
-18.8905 kcal/mol |
5.35984 kcal/mol |
2.14311 kcal/mol |
126 141@LB@ | |@LB@5'-UCC...UCGUG G CGACG...CCG-3'@LB@ GUGGU AGCCUGAU@LB@ |||:| ||||||||@LB@ CACUA UCGGACUA@LB@3'-UUU...UUUGG A CUCCU...GUU-5'@LB@ | |@LB@ 117 102@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -18.8905 kcal/mol@LB@Unfolding Energy - mRNA 5.35984 kcal/mol@LB@Unfolding Energy - sRNA 2.14311 kcal/mol@LB@@LB@Position - mRNA 127 -- 140@LB@Position - sRNA 103 -- 116@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 103 -- 109@LB@ |
128 |
0.00255 |
0.0912 |
pa3463 |
N/A |
-7.51 |
0.486845 |
225 -- 240 |
104 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________224_________________241\n_____________|___________________|\n5'-UCG...UGCUC_______ACAC________ACAAC...CGC-3'\n______________GAAGCCG_______CCUGA\n______________:||:|||_______|||||\n______________UUUUGGC_______GGACU\n3'-UUU...CCAGU_______ACUAAUC_____ACUCC...GUU-5'\n_____________|___________________|\n_____________123_________________103\n |
225 -- 231 |
116 -- 122 |
-12.6194 kcal/mol |
2.87159 kcal/mol |
2.24249 kcal/mol |
224 241@LB@ | |@LB@5'-UCG...UGCUC ACAC ACAAC...CGC-3'@LB@ GAAGCCG CCUGA@LB@ :||:||| |||||@LB@ UUUUGGC GGACU@LB@3'-UUU...CCAGU ACUAAUC ACUCC...GUU-5'@LB@ | |@LB@ 123 103@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -12.6194 kcal/mol@LB@Unfolding Energy - mRNA 2.87159 kcal/mol@LB@Unfolding Energy - sRNA 2.24249 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 104 -- 122@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 116 -- 122@LB@ |
33 |
8.454e-05 |
0.01177 |
pa3481 |
N/A |
-18.00 |
0.001084 |
15 -- 90 |
50 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________14_________________________________________________________________________________91\n_____________|__________________________________________________________________________________|\n5'-GUC...GAAUG______________G_A_________GCG_____UAACGAG___CU_______U__GGACAUGGGU________________GAGCU...AGG-3'\n______________GAACCGU___UGGC_U___GGGGAGG____CUGG_______GAU__UGCGUGG_UC__________UCGGCUUAUCGGCUGA\n______________:||||||___|:||_|___|:||||:____|||:_______||:__|||||||_||__________||:|||||:|||||||\n______________UUUGGCA___AUCG_A___CUCCUCU____GACU_______CUG__ACGCACC_AG__________AGUCGAAUGGCCGACU\n3'-UUU...CAGUU_______CUA____G_CUA_______AUUA____UCUCAGG____________C__AG________________________AGAGC...GUU-5'\n_____________|__________________________________________________________________________________|\n_____________122________________________________________________________________________________49\n |
84 -- 90 |
50 -- 56 |
-67.3131 kcal/mol |
26.9383 kcal/mol |
22.3832 kcal/mol |
14 91@LB@ | |@LB@5'-GUC...GAAUG G A GCG UAACGAG CU U GGACAUGGGU GAGCU...AGG-3'@LB@ GAACCGU UGGC U GGGGAGG CUGG GAU UGCGUGG UC UCGGCUUAUCGGCUGA@LB@ :|||||| |:|| | |:||||: |||: ||: ||||||| || ||:|||||:|||||||@LB@ UUUGGCA AUCG A CUCCUCU GACU CUG ACGCACC AG AGUCGAAUGGCCGACU@LB@3'-UUU...CAGUU CUA G CUA AUUA UCUCAGG C AG AGAGC...GUU-5'@LB@ | |@LB@ 122 49@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -67.3131 kcal/mol@LB@Unfolding Energy - mRNA 26.9383 kcal/mol@LB@Unfolding Energy - sRNA 22.3832 kcal/mol@LB@@LB@Position - mRNA 15 -- 90@LB@Position - sRNA 50 -- 121@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 50 -- 56@LB@ |
156 |
0.00379 |
0.1117 |
pa3495 |
nth |
-14.09 |
0.018638 |
94 -- 117 |
105 -- 123 |
endonuclease III |
|
_____________93_______________________118\n_____________|________________________|\n5'-UGG...CCCUG_________AUC___GAA______GCGGA...UCA-3'\n______________AAGAACCGU___GAU___AGCCUG\n______________||:||||||___|||___||||||\n______________UUUUUGGCA___CUA___UCGGAC\n3'-UUU...CCCAG_______________A________UACUC...GUU-5'\n_____________|________________________|\n_____________124______________________104\n |
96 -- 102 |
115 -- 121 |
-18.312 kcal/mol |
1.98459 kcal/mol |
2.24275 kcal/mol |
93 118@LB@ | |@LB@5'-UGG...CCCUG AUC GAA GCGGA...UCA-3'@LB@ AAGAACCGU GAU AGCCUG@LB@ ||:|||||| ||| ||||||@LB@ UUUUUGGCA CUA UCGGAC@LB@3'-UUU...CCCAG A UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -18.312 kcal/mol@LB@Unfolding Energy - mRNA 1.98459 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 94 -- 117@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 115 -- 121@LB@ |
103 |
0.001681 |
0.07499 |
pa3587 |
metR |
-12.26 |
0.055812 |
244 -- 261 |
101 -- 121 |
transcriptional regulator MetR |
|
_____________243___________________262\n_____________|_____________________|\n5'-CAG...GCGCG______AC_____________AAGCC...UGU-3'\n______________AAGCCG_____AGCCUGGUGG\n______________||:|||_____||||||:||:\n______________UUUGGC_____UCGGACUACU\n3'-UUU...CAGUU______ACUAA__________CCUCU...GUU-5'\n_____________|_____________________|\n_____________122___________________100\n |
255 -- 261 |
101 -- 107 |
-20.5431 kcal/mol |
6.04584 kcal/mol |
2.24386 kcal/mol |
243 262@LB@ | |@LB@5'-CAG...GCGCG AC AAGCC...UGU-3'@LB@ AAGCCG AGCCUGGUGG@LB@ ||:||| ||||||:||:@LB@ UUUGGC UCGGACUACU@LB@3'-UUU...CAGUU ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 122 100@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -20.5431 kcal/mol@LB@Unfolding Energy - mRNA 6.04584 kcal/mol@LB@Unfolding Energy - sRNA 2.24386 kcal/mol@LB@@LB@Position - mRNA 244 -- 261@LB@Position - sRNA 101 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
180 |
0.004705 |
0.1199 |
pa3616 |
N/A |
-16.34 |
0.003989 |
120 -- 132 |
35 -- 47 |
recombination regulator RecX |
|
_____________119___________133\n_____________|_____________|\n5'-GUC...ACCAU_____________CUGGC...UGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
126 -- 132 |
35 -- 41 |
-23.7921 kcal/mol |
3.77419 kcal/mol |
3.68501 kcal/mol |
119 133@LB@ | |@LB@5'-GUC...ACCAU CUGGC...UGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -23.7921 kcal/mol@LB@Unfolding Energy - mRNA 3.77419 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 120 -- 132@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 35 -- 41@LB@ |
91 |
0.001223 |
0.06177 |
pa3618 |
N/A |
-14.35 |
0.015718 |
191 -- 224 |
76 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________190_______________________________________________225\n_____________|_________________________________________________|\n5'-GAG...CCCUG______A_____GAC_______________________________C__ACCGC...CCG-3'\n______________GAGAAC_GUGAU___CCUGAUG_______________GAGUCCGAC_UG\n______________:|:|||_|||||___|||||||_______________|||||||||_||\n______________UUUUUG_CACUA___GGACUAC_______________CUCAGGCUG_AC\n3'-UUU...CCCAG______G_____AUC_______UCCUCUAUUAGACUU____________GCACC...GUU-5'\n_____________|_________________________________________________|\n_____________124_______________________________________________75\n |
215 -- 221 |
78 -- 84 |
-35.9898 kcal/mol |
9.49172 kcal/mol |
12.1513 kcal/mol |
190 225@LB@ | |@LB@5'-GAG...CCCUG A GAC C ACCGC...CCG-3'@LB@ GAGAAC GUGAU CCUGAUG GAGUCCGAC UG@LB@ :|:||| ||||| ||||||| ||||||||| ||@LB@ UUUUUG CACUA GGACUAC CUCAGGCUG AC@LB@3'-UUU...CCCAG G AUC UCCUCUAUUAGACUU GCACC...GUU-5'@LB@ | |@LB@ 124 75@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -35.9898 kcal/mol@LB@Unfolding Energy - mRNA 9.49172 kcal/mol@LB@Unfolding Energy - sRNA 12.1513 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 76 -- 123@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 78 -- 84@LB@ |
8 |
1.007e-05 |
0.004211 |
pa3621 |
fdxA |
-18.47 |
0.000724 |
244 -- 255 |
71 -- 82 |
ferredoxin I |
|
_____________243__________256\n_____________|____________|\n5'-CCU...AUACA____________AAGUC...UGG-3'\n______________CCGACUGCGUGG\n______________||||||||||||\n______________GGCUGACGCACC\n3'-UUU...UCUCA____________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
249 -- 255 |
71 -- 77 |
-26.3412 kcal/mol |
3.76302 kcal/mol |
4.10469 kcal/mol |
243 256@LB@ | |@LB@5'-CCU...AUACA AAGUC...UGG-3'@LB@ CCGACUGCGUGG@LB@ ||||||||||||@LB@ GGCUGACGCACC@LB@3'-UUU...UCUCA CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -26.3412 kcal/mol@LB@Unfolding Energy - mRNA 3.76302 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 71 -- 77@LB@ |