| 116 |
0.00199 |
0.07883 |
pa4478 |
N/A |
-13.34 |
0.029660 |
177 -- 225 |
39 -- 82 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________176____________________________________________________226\n_____________|______________________________________________________|\n5'-CAA...AUCGC__________UUCCC___AGC______________UC____U_______CU___CCUCG...AGU-3'\n______________CCGAC_GCGU_____GGG___CUC_CA___UGCCG__GCUG_AUCUCGC__CCG\n______________|||||_||||_____|||___|||_||___|:|||__||||_|||||||__||:\n______________GGCUG_CGCA_____CCC___GAG_GU___AUGGC__CGAC_UAGAGCG__GGU\n3'-UUU...UCUCA_____A____________A_____A__CGA___________________CU___CAACU...GUU-5'\n_____________|______________________________________________________|\n_____________83_____________________________________________________38\n |
214 -- 220 |
44 -- 50 |
-46.9389 kcal/mol |
14.7161 kcal/mol |
18.8872 kcal/mol |
176 226@LB@ | |@LB@5'-CAA...AUCGC UUCCC AGC UC U CU CCUCG...AGU-3'@LB@ CCGAC GCGU GGG CUC CA UGCCG GCUG AUCUCGC CCG@LB@ ||||| |||| ||| ||| || |:||| |||| ||||||| ||:@LB@ GGCUG CGCA CCC GAG GU AUGGC CGAC UAGAGCG GGU@LB@3'-UUU...UCUCA A A A CGA CU CAACU...GUU-5'@LB@ | |@LB@ 83 38@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -46.9389 kcal/mol@LB@Unfolding Energy - mRNA 14.7161 kcal/mol@LB@Unfolding Energy - sRNA 18.8872 kcal/mol@LB@@LB@Position - mRNA 177 -- 225@LB@Position - sRNA 39 -- 82@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 61 |
0.0005242 |
0.0395 |
pa4564 |
N/A |
-14.31 |
0.016198 |
190 -- 242 |
35 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189______________________________________________________243\n_____________|________________________________________________________|\n5'-AGC...UCUGA______GG___A____CAAG____GCG__G_______G_________U________CCGGC...UCG-3'\n______________GGAGAG__CGA_UGCG_____CUC___GG_UUGCUGG_UGGUCU_GC_GCU_GUUG\n______________|:||||__|||_||||_____|||___:|_||:|:||_||:|||_||_:|:_||||\n______________CUUCUC__GCU_ACGC_____GAG___UC_AAUGGCC_ACUAGA_CG_UGG_CAAC\n3'-UUU...UUAGA______AG___G____ACCCA___AG___G_______G______G__C___U____UCACU...GUU-5'\n_____________|________________________________________________________|\n_____________90_______________________________________________________34\n |
219 -- 225 |
54 -- 60 |
-52.8641 kcal/mol |
19.5279 kcal/mol |
19.034 kcal/mol |
189 243@LB@ | |@LB@5'-AGC...UCUGA GG A CAAG GCG G G U CCGGC...UCG-3'@LB@ GGAGAG CGA UGCG CUC GG UUGCUGG UGGUCU GC GCU GUUG@LB@ |:|||| ||| |||| ||| :| ||:|:|| ||:||| || :|: ||||@LB@ CUUCUC GCU ACGC GAG UC AAUGGCC ACUAGA CG UGG CAAC@LB@3'-UUU...UUAGA AG G ACCCA AG G G G C U UCACU...GUU-5'@LB@ | |@LB@ 90 34@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -52.8641 kcal/mol@LB@Unfolding Energy - mRNA 19.5279 kcal/mol@LB@Unfolding Energy - sRNA 19.034 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 35 -- 89@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 177 |
0.004514 |
0.1172 |
pa4639 |
N/A |
-11.28 |
0.094804 |
222 -- 231 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221________232\n_____________|__________|\n5'-GUC...UGCUC__________CCGCA...UUA-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
225 -- 231 |
101 -- 107 |
-16.5496 kcal/mol |
3.15503 kcal/mol |
2.11196 kcal/mol |
221 232@LB@ | |@LB@5'-GUC...UGCUC CCGCA...UUA-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.28 kcal/mol@LB@Hybridization Energy -16.5496 kcal/mol@LB@Unfolding Energy - mRNA 3.15503 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 222 -- 231@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 140 |
0.002911 |
0.09555 |
pa4656 |
N/A |
-13.59 |
0.025440 |
215 -- 238 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________214______________________239\n_____________|________________________|\n5'-GCC...CUCUU_____GC___ACC___________UCGCC...GGC-3'\n______________GACCG__GGU___GGCCUGAUGGG\n______________:||||__|:|___:||||||||:|\n______________UUGGC__CUA___UCGGACUACUC\n3'-UUU...AGUUU_____A____A_____________CUCUA...GUU-5'\n_____________|________________________|\n_____________121______________________99\n |
232 -- 238 |
100 -- 106 |
-25.6163 kcal/mol |
9.78003 kcal/mol |
2.24919 kcal/mol |
214 239@LB@ | |@LB@5'-GCC...CUCUU GC ACC UCGCC...GGC-3'@LB@ GACCG GGU GGCCUGAUGGG@LB@ :|||| |:| :||||||||:|@LB@ UUGGC CUA UCGGACUACUC@LB@3'-UUU...AGUUU A A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -25.6163 kcal/mol@LB@Unfolding Energy - mRNA 9.78003 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 147 |
0.003398 |
0.1053 |
pa4657 |
N/A |
-14.94 |
0.010704 |
152 -- 169 |
105 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________151_________________170\n_____________|___________________|\n5'-UCU...GUACA_____________C_____UCCAG...AGG-3'\n______________AGAAACC_UGAUU_GCCUG\n______________|:|||||_|||||_|||||\n______________UUUUUGG_ACUAA_CGGAC\n3'-UUU...CCCAG_______C_____U_____UACUC...GUU-5'\n_____________|___________________|\n_____________124_________________104\n |
152 -- 158 |
117 -- 123 |
-19.6832 kcal/mol |
2.50735 kcal/mol |
2.24275 kcal/mol |
151 170@LB@ | |@LB@5'-UCU...GUACA C UCCAG...AGG-3'@LB@ AGAAACC UGAUU GCCUG@LB@ |:||||| ||||| |||||@LB@ UUUUUGG ACUAA CGGAC@LB@3'-UUU...CCCAG C U UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -19.6832 kcal/mol@LB@Unfolding Energy - mRNA 2.50735 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 152 -- 169@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 195 |
0.005273 |
0.1243 |
pa4698 |
N/A |
-10.50 |
0.140691 |
227 -- 236 |
35 -- 44 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________226________237\n_____________|__________|\n5'-CUC...CUGGC__________UUGCU...AAG-3'\n______________CGACCAGUUG\n______________||||||||||\n______________GCUGGUCAAC\n3'-UUU...AGAGC__________UCACU...GUU-5'\n_____________|__________|\n_____________45_________34\n |
230 -- 236 |
35 -- 41 |
-16.2278 kcal/mol |
3.48351 kcal/mol |
2.24737 kcal/mol |
226 237@LB@ | |@LB@5'-CUC...CUGGC UUGCU...AAG-3'@LB@ CGACCAGUUG@LB@ ||||||||||@LB@ GCUGGUCAAC@LB@3'-UUU...AGAGC UCACU...GUU-5'@LB@ | |@LB@ 45 34@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -16.2278 kcal/mol@LB@Unfolding Energy - mRNA 3.48351 kcal/mol@LB@Unfolding Energy - sRNA 2.24737 kcal/mol@LB@@LB@Position - mRNA 227 -- 236@LB@Position - sRNA 35 -- 44@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 174 |
0.00444 |
0.1171 |
pa4756 |
carB |
-14.46 |
0.014655 |
252 -- 264 |
107 -- 119 |
carbamoyl phosphate synthase large subunit |
|
_____________251___________265\n_____________|_____________|\n5'-GGU...GCCCC_____________AGGCC...CCU-3'\n______________AUCGUGAUUGGCC\n______________|:|||||||:|||\n______________UGGCACUAAUCGG\n3'-UUU...GUUUU_____________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
258 -- 264 |
107 -- 113 |
-20.5807 kcal/mol |
3.88907 kcal/mol |
2.23484 kcal/mol |
251 265@LB@ | |@LB@5'-GGU...GCCCC AGGCC...CCU-3'@LB@ AUCGUGAUUGGCC@LB@ |:|||||||:|||@LB@ UGGCACUAAUCGG@LB@3'-UUU...GUUUU ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -20.5807 kcal/mol@LB@Unfolding Energy - mRNA 3.88907 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 252 -- 264@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 131 |
0.002644 |
0.0912 |
pa4772 |
N/A |
-11.20 |
0.098904 |
193 -- 209 |
105 -- 123 |
ferredoxin |
|
_____________192__________________210\n_____________|____________________|\n5'-CCG...CCGAG________A___________CCGAU...ACG-3'\n______________GAAAGCCG_UGA___GCCUG\n______________:|||:|||_|||___|||||\n______________UUUUUGGC_ACU___CGGAC\n3'-UUU...CCCAG____________AAU_____UACUC...GUU-5'\n_____________|____________________|\n_____________124__________________104\n |
194 -- 200 |
116 -- 122 |
-17.7993 kcal/mol |
4.35882 kcal/mol |
2.24275 kcal/mol |
192 210@LB@ | |@LB@5'-CCG...CCGAG A CCGAU...ACG-3'@LB@ GAAAGCCG UGA GCCUG@LB@ :|||:||| ||| |||||@LB@ UUUUUGGC ACU CGGAC@LB@3'-UUU...CCCAG AAU UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -17.7993 kcal/mol@LB@Unfolding Energy - mRNA 4.35882 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 116 -- 122@LB@ |
