| 2 |
9.847e-10 |
2.263e-06 |
pa5490 |
cc4 |
-23.49 |
0.000003 |
181 -- 254 |
56 -- 120 |
cytochrome C4 |
|
_____________180___________________________________________________________________________255\n_____________|_____________________________________________________________________________|\n5'-ACC...CCCUU______AAUUG______________ACAAACU____CGU___________U__ACCC_______GAC___C______CAUGC...UAU-3'\n______________AGCCGU_____GAUUAG_CUGAUGA________UCU___GAGUCUG_CUG_UG____UGGGUCU___CGG_CUUGCC\n______________|:||||_____||||||_|||||||________|||___|||||:|_|||_:|____|||||||___|:|_|||:||\n______________UUGGCA_____CUAAUC_GACUACU________AGA___CUCAGGC_GAC_GC____ACCCAGA___GUC_GAAUGG\n3'-UUU...AGUUU_________________G_______CCUCUAUU___CUU_______U_________________GA___________CCGAC...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________121___________________________________________________________________________55\n |
235 -- 241 |
67 -- 73 |
-59.1342 kcal/mol |
19.5582 kcal/mol |
16.0942 kcal/mol |
180 255@LB@ | |@LB@5'-ACC...CCCUU AAUUG ACAAACU CGU U ACCC GAC C CAUGC...UAU-3'@LB@ AGCCGU GAUUAG CUGAUGA UCU GAGUCUG CUG UG UGGGUCU CGG CUUGCC@LB@ |:|||| |||||| ||||||| ||| |||||:| ||| :| ||||||| |:| |||:||@LB@ UUGGCA CUAAUC GACUACU AGA CUCAGGC GAC GC ACCCAGA GUC GAAUGG@LB@3'-UUU...AGUUU G CCUCUAUU CUU U GA CCGAC...GUU-5'@LB@ | |@LB@ 121 55@LB@@LB@@LB@Energy -23.49 kcal/mol@LB@Hybridization Energy -59.1342 kcal/mol@LB@Unfolding Energy - mRNA 19.5582 kcal/mol@LB@Unfolding Energy - sRNA 16.0942 kcal/mol@LB@@LB@Position - mRNA 181 -- 254@LB@Position - sRNA 56 -- 120@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 110 |
0.00181 |
0.07562 |
pa2449 |
N/A |
-19.06 |
0.000430 |
48 -- 69 |
99 -- 122 |
transcriptional regulator |
|
_____________47_______________________70\n_____________|________________________|\n5'-UGC...UGACC___________________C____GCGAC...UGG-3'\n______________GAAACCGUGAU_GGCC_GA_GAGG\n______________:||||||||||_:|||_||_||||\n______________UUUUGGCACUA_UCGG_CU_CUCC\n3'-UUU...CCAGU___________A____A__A____UCUAU...GUU-5'\n_____________|________________________|\n_____________123______________________98\n |
52 -- 58 |
112 -- 118 |
-29.2814 kcal/mol |
7.97339 kcal/mol |
2.25034 kcal/mol |
47 70@LB@ | |@LB@5'-UGC...UGACC C GCGAC...UGG-3'@LB@ GAAACCGUGAU GGCC GA GAGG@LB@ :|||||||||| :||| || ||||@LB@ UUUUGGCACUA UCGG CU CUCC@LB@3'-UUU...CCAGU A A A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -19.06 kcal/mol@LB@Hybridization Energy -29.2814 kcal/mol@LB@Unfolding Energy - mRNA 7.97339 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 48 -- 69@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 43 |
0.0002634 |
0.02815 |
pa2831 |
N/A |
-19.04 |
0.000437 |
175 -- 195 |
99 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________174___________________196\n_____________|_____________________|\n5'-CUG...CGGGU________UC___C_______UUCCC...GCC-3'\n______________CCGUGAUU__GCC_GAUGAGG\n______________||||||||__|||_|||||||\n______________GGCACUAA__CGG_CUACUCC\n3'-UUU...UUUUU________U____A_______UCUAU...GUU-5'\n_____________|_____________________|\n_____________119___________________98\n |
189 -- 195 |
99 -- 105 |
-28.8067 kcal/mol |
7.51614 kcal/mol |
2.24947 kcal/mol |
174 196@LB@ | |@LB@5'-CUG...CGGGU UC C UUCCC...GCC-3'@LB@ CCGUGAUU GCC GAUGAGG@LB@ |||||||| ||| |||||||@LB@ GGCACUAA CGG CUACUCC@LB@3'-UUU...UUUUU U A UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -19.04 kcal/mol@LB@Hybridization Energy -28.8067 kcal/mol@LB@Unfolding Energy - mRNA 7.51614 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 175 -- 195@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 51 |
0.0003802 |
0.03426 |
pa4431 |
N/A |
-18.94 |
0.000478 |
156 -- 218 |
72 -- 123 |
iron-sulfur protein |
|
_____________155________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-UAU...UACUU_______________AACAGGUCUGAAG____________C________U____AA____G_____AAUGC...UCG-3'\n______________AAAGGCC_UGAUUAG_____________CUGAUG_GGAGA_GA_CUGAA_GAGU__UGAC_GCGUG\n______________|||::||_|||||||_____________||||||_|||||_:|_|||||_||||__:|||_|||||\n______________UUUUUGG_ACUAAUC_____________GACUAC_CCUCU_UU_GACUU_CUCA__GCUG_CGCAC\n3'-UUU...CCCAG_______C_______G__________________U_____A__A__________G_____A_____CCAGA...GUU-5'\n_____________|__________________________________________________________________|\n_____________124________________________________________________________________71\n |
163 -- 169 |
109 -- 115 |
-49.3111 kcal/mol |
18.1339 kcal/mol |
12.2386 kcal/mol |
155 219@LB@ | |@LB@5'-UAU...UACUU AACAGGUCUGAAG C U AA G AAUGC...UCG-3'@LB@ AAAGGCC UGAUUAG CUGAUG GGAGA GA CUGAA GAGU UGAC GCGUG@LB@ |||::|| ||||||| |||||| ||||| :| ||||| |||| :||| |||||@LB@ UUUUUGG ACUAAUC GACUAC CCUCU UU GACUU CUCA GCUG CGCAC@LB@3'-UUU...CCCAG C G U A A G A CCAGA...GUU-5'@LB@ | |@LB@ 124 71@LB@@LB@@LB@Energy -18.94 kcal/mol@LB@Hybridization Energy -49.3111 kcal/mol@LB@Unfolding Energy - mRNA 18.1339 kcal/mol@LB@Unfolding Energy - sRNA 12.2386 kcal/mol@LB@@LB@Position - mRNA 156 -- 218@LB@Position - sRNA 72 -- 123@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 109 -- 115@LB@ |
| 20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 9 |
1.098e-05 |
0.004211 |
pa0119 |
N/A |
-18.72 |
0.000584 |
256 -- 296 |
78 -- 118 |
C4-dicarboxylate transporter DctA |
pa5479 pa1183 |
_____________255________________________________________297\n_____________|__________________________________________|\n5'-GCC...GCAAG__________________UA__C________C__________AUUC-3'\n______________UCGUGAUUGGCCUGGUGA__GG_GUGAUCUG_GGGGU_CGGC\n______________:|||||||:|||||:|||__:|_:|:|||||_:|:||_||:|\n______________GGCACUAAUCGGACUACU__UC_UAUUAGAC_UCUCA_GCUG\n3'-UUU...UUUUU__________________CC___________U_____G____ACGCA...GUU-5'\n_____________|__________________________________________|\n_____________119________________________________________77\n |
267 -- 273 |
101 -- 107 |
-51.6638 kcal/mol |
20.8263 kcal/mol |
12.1236 kcal/mol |
255 297@LB@ | |@LB@5'-GCC...GCAAG UA C C AUUC-3'@LB@ UCGUGAUUGGCCUGGUGA GG GUGAUCUG GGGGU CGGC@LB@ :|||||||:|||||:||| :| :|:||||| :|:|| ||:|@LB@ GGCACUAAUCGGACUACU UC UAUUAGAC UCUCA GCUG@LB@3'-UUU...UUUUU CC U G ACGCA...GUU-5'@LB@ | |@LB@ 119 77@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -51.6638 kcal/mol@LB@Unfolding Energy - mRNA 20.8263 kcal/mol@LB@Unfolding Energy - sRNA 12.1236 kcal/mol@LB@@LB@Position - mRNA 256 -- 296@LB@Position - sRNA 78 -- 118@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 8 |
1.007e-05 |
0.004211 |
pa3621 |
fdxA |
-18.47 |
0.000724 |
244 -- 255 |
71 -- 82 |
ferredoxin I |
|
_____________243__________256\n_____________|____________|\n5'-CCU...AUACA____________AAGUC...UGG-3'\n______________CCGACUGCGUGG\n______________||||||||||||\n______________GGCUGACGCACC\n3'-UUU...UCUCA____________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
249 -- 255 |
71 -- 77 |
-26.3412 kcal/mol |
3.76302 kcal/mol |
4.10469 kcal/mol |
243 256@LB@ | |@LB@5'-CCU...AUACA AAGUC...UGG-3'@LB@ CCGACUGCGUGG@LB@ ||||||||||||@LB@ GGCUGACGCACC@LB@3'-UUU...UCUCA CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -26.3412 kcal/mol@LB@Unfolding Energy - mRNA 3.76302 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
