Freiburg RNA Tools
AntaRNA - Multi-obj. Sequence Design
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IFF
AntaRNA

AntaRNA - Multi-obj. Sequence Design

AntaRNA is an Ant-Colony Optimization based tool which solves the RNA inverse folding problem. It designs RNA sequences which satisfy a set of constraints made by the user. The realized multi-objective optimization allows to introduce structure, sequence and GC-content constraints.

For articles describing the tool refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try AntaRNA with these examples:

Constraints

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Constraint visualization

Explicit structure constraints are given in white, invalid base pairs in red, block constraints colored. Visualization done with forna
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Output

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Method

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When using AntaRNA please cite :

Results are computed with AntaRNA version 1.1.2 using Vienna RNA package 2.1.8 or pKiss (2014-03-17)