| 148 |
0.003408 |
0.1053 |
pa1533 |
N/A |
-10.12 |
0.169364 |
218 -- 231 |
101 -- 120 |
nucleoid-associated protein |
|
_____________217__________________232\n_____________|____________________|\n5'-AGA...GGCAU____________________AGCAG...CCG-3'\n______________GGCCG______GCCUGAUGA\n______________::|||______|||||||||\n______________UUGGC______CGGACUACU\n3'-UUU...AGUUU_____ACUAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-19.3791 kcal/mol |
7.01958 kcal/mol |
2.2437 kcal/mol |
217 232@LB@ | |@LB@5'-AGA...GGCAU AGCAG...CCG-3'@LB@ GGCCG GCCUGAUGA@LB@ ::||| |||||||||@LB@ UUGGC CGGACUACU@LB@3'-UUU...AGUUU ACUAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -19.3791 kcal/mol@LB@Unfolding Energy - mRNA 7.01958 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 218 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 155 |
0.003654 |
0.1083 |
pa1551 |
N/A |
-14.46 |
0.014645 |
185 -- 205 |
100 -- 119 |
ferredoxin |
|
_____________184___________________206\n_____________|_____________________|\n5'-ACC...CCACU________AC__A________CAAAC...GGG-3'\n______________GCCGUGGU__GC_CUGAUGAG\n______________:|||||:|__||_||||||||\n______________UGGCACUA__CG_GACUACUC\n3'-UUU...GUUUU________AU___________CUCUA...GUU-5'\n_____________|_____________________|\n_____________120___________________99\n |
199 -- 205 |
100 -- 106 |
-27.0785 kcal/mol |
10.3705 kcal/mol |
2.24903 kcal/mol |
184 206@LB@ | |@LB@5'-ACC...CCACU AC A CAAAC...GGG-3'@LB@ GCCGUGGU GC CUGAUGAG@LB@ :|||||:| || ||||||||@LB@ UGGCACUA CG GACUACUC@LB@3'-UUU...GUUUU AU CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -27.0785 kcal/mol@LB@Unfolding Energy - mRNA 10.3705 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 83 |
0.001018 |
0.05635 |
pa1553 |
ccoO1 |
-12.95 |
0.037511 |
176 -- 198 |
75 -- 98 |
cbb3-type cytochrome C oxidase subunit II |
pa1556 |
_____________175______________________199\n_____________|________________________|\n5'-AAC...CGCGC____CGC________C________AAAUG...UGU-3'\n______________AGAU___CUGAGGAG_CCGAC_GU\n______________||||___||||:|||_|||||_|:\n______________UCUA___GACUUCUC_GGCUG_CG\n3'-UUU...ACUCC____UUA________A_____A__CACCC...GUU-5'\n_____________|________________________|\n_____________99_______________________74\n |
184 -- 190 |
84 -- 90 |
-23.7581 kcal/mol |
4.66617 kcal/mol |
6.14905 kcal/mol |
175 199@LB@ | |@LB@5'-AAC...CGCGC CGC C AAAUG...UGU-3'@LB@ AGAU CUGAGGAG CCGAC GU@LB@ |||| ||||:||| ||||| |:@LB@ UCUA GACUUCUC GGCUG CG@LB@3'-UUU...ACUCC UUA A A CACCC...GUU-5'@LB@ | |@LB@ 99 74@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -23.7581 kcal/mol@LB@Unfolding Energy - mRNA 4.66617 kcal/mol@LB@Unfolding Energy - sRNA 6.14905 kcal/mol@LB@@LB@Position - mRNA 176 -- 198@LB@Position - sRNA 75 -- 98@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 4 |
5.154e-07 |
0.0005922 |
pa1581 |
sdhC |
-15.05 |
0.009907 |
206 -- 221 |
108 -- 123 |
succinate dehydrogenase subunit C |
|
_____________205______________222\n_____________|________________|\n5'-ACG...GUGAA___________A____AAACG...CUG-3'\n______________AAAAGCCGUGA_UAGC\n______________||||:||||||_||||\n______________UUUUUGGCACU_AUCG\n3'-UUU...CCCAG___________A____GACUA...GUU-5'\n_____________|________________|\n_____________124______________107\n |
210 -- 216 |
113 -- 119 |
-19.67 kcal/mol |
2.45872 kcal/mol |
2.16544 kcal/mol |
205 222@LB@ | |@LB@5'-ACG...GUGAA A AAACG...CUG-3'@LB@ AAAAGCCGUGA UAGC@LB@ ||||:|||||| ||||@LB@ UUUUUGGCACU AUCG@LB@3'-UUU...CCCAG A GACUA...GUU-5'@LB@ | |@LB@ 124 107@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -19.67 kcal/mol@LB@Unfolding Energy - mRNA 2.45872 kcal/mol@LB@Unfolding Energy - sRNA 2.16544 kcal/mol@LB@@LB@Position - mRNA 206 -- 221@LB@Position - sRNA 108 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 94 |
0.001308 |
0.06355 |
pa1587 |
lpdG |
-9.92 |
0.185926 |
282 -- 296 |
75 -- 91 |
2-oxoglutarate dehydrogenase complex dihydrolipoyl dehydrogenase |
|
_____________281_______________297\n_____________|_________________|\n5'-GUG...UGGGC____________C____AUCG-3'\n______________CUGAAGA__CCG_CUGC\n______________|||||||__|||_||||\n______________GACUUCU__GGC_GACG\n3'-UUU...UAUUA_______CA___U____CACCC...GUU-5'\n_____________|_________________|\n_____________92________________74\n |
282 -- 288 |
85 -- 91 |
-18.2743 kcal/mol |
2.47066 kcal/mol |
5.88668 kcal/mol |
281 297@LB@ | |@LB@5'-GUG...UGGGC C AUCG-3'@LB@ CUGAAGA CCG CUGC@LB@ ||||||| ||| ||||@LB@ GACUUCU GGC GACG@LB@3'-UUU...UAUUA CA U CACCC...GUU-5'@LB@ | |@LB@ 92 74@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2743 kcal/mol@LB@Unfolding Energy - mRNA 2.47066 kcal/mol@LB@Unfolding Energy - sRNA 5.88668 kcal/mol@LB@@LB@Position - mRNA 282 -- 296@LB@Position - sRNA 75 -- 91@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 85 -- 91@LB@ |
| 114 |
0.001956 |
0.07883 |
pa1616 |
N/A |
-7.83 |
0.436748 |
16 -- 25 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________15_________26\n_____________|__________|\n5'-GGC...ACGGC__________CUUUC...AGA-3'\n______________AGCCUGAUGG\n______________|||||||||:\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
19 -- 25 |
101 -- 107 |
-16.0192 kcal/mol |
6.07491 kcal/mol |
2.11196 kcal/mol |
15 26@LB@ | |@LB@5'-GGC...ACGGC CUUUC...AGA-3'@LB@ AGCCUGAUGG@LB@ |||||||||:@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -16.0192 kcal/mol@LB@Unfolding Energy - mRNA 6.07491 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 16 -- 25@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 88 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 89 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
