Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 6043544

Input and runtime details for job 6043544 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6043544 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:35:25 CET 2014
?Processing Started@ Mon Oct 27 22:46:21 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 04:25:09 CET 2014
?Post-Processing Finished@ Tue Oct 28 04:25:09 CET 2014
?Job Completed@ Tue Oct 28 04:25:31 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6043544&toolName=CopraRNA ( 30 days expiry )

The job description you specified

SR1

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[txt]
[png] [pdf] [ps]
[png] [pdf] [ps]
[html] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000964 Bacillus subtilis subsp. subtilis str. 168

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 9.088e-05 0.2887 bsu20780 yopS -11.05 0.079061 15 -- 29 39 -- 54 XRE family transcriptional regulator   4
2 0.0002272 0.2887 bsu07955 yfkA -10.87 0.087327 20 -- 57 36 -- 63 radical SAM protein YfkA   0
3 0.000236 0.2887 bsu13640 spo0E -17.57 0.001190 136 -- 180 32 -- 78 aspartyl-phosphate phosphatase Spo0E   2
4 0.0004159 0.3815 bsu09965 yhaJ -5.25 0.866847 246 -- 252 135 -- 141 membrane protein   1
5 0.0005845 0.4289 bsu38090 vpr -8.63 0.281945 246 -- 286 133 -- 174 minor extracellular protease vpr   1
6 0.0008667 0.4575 bsu27290 yrzA -8.95 0.241501 1 -- 17 111 -- 136 Evidence 4: Homologs of previously reported genes of unknown function   0
7 0.001024 0.4575 bsu14050 ykuE -10.25 0.123131 1 -- 16 37 -- 54 metallophosphoesterase   1
8 0.001041 0.4575 bsu19610 yodI -16.12 0.003267 8 -- 27 49 -- 68 Evidence 4: Homologs of previously reported genes of unknown function   2
9 0.001122 0.4575 bsu29870 ytzB -8.80 0.260047 22 -- 51 39 -- 59 Evidence 4: Homologs of previously reported genes of unknown function   0
10 0.001381 0.5066 bsu10790 asnO -14.10 0.012443 3 -- 70 31 -- 73 asparagine synthetase 3   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:
Feeds the job parameters to the input page to resubmit the job.

de.NBI usability assessment

Please support us by filling this short quality survey for evaluating this de.NBI service.

When using CopraRNA please cite :

Results are computed with CopraRNA version 2.0.1