| 11 |
0.0003253 |
0.1011 |
bsu31319 |
yuzI |
-20.00 |
0.002830 |
16 -- 82 |
99 -- 165 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 16704729; Product type f : factor |
|
_____________15______________________________________________________________________83\n_____________|_______________________________________________________________________|\n5'-UAA...CAGUC_____U___UUC__U_G___________G_U____U______UUUUCCUCACUC_________A__G____CAUCA...ACU-3'\n______________CUUCA_UCA___GG_C_AUUG_C__UGU_C_CAGC__GUUCC____________GUCACUUUC_UA_CUUC\n______________|||||_|||___||_|_||||_|__|||_|_||||__|||||____________|||||||||_:|_||||\n______________GAAGU_AGU___CC_G_UAAC_G__ACA_G_GUCG__CAAGG____________CAGUGAAAG_GU_GAAG\n3'-AUU...AAUGA_________UGU__U______U_UA___G_C____UU_____UAUAUUACAA___________A__A____UUUCA...CAA-5'\n_____________|_______________________________________________________________________|\n_____________166_____________________________________________________________________98\n |
68 -- 74 |
107 -- 113 |
-43.9371 kcal/mol |
8.77558 kcal/mol |
17.9339 kcal/mol |
15 83@LB@ | |@LB@5'-UAA...CAGUC U UUC U G G U U UUUUCCUCACUC A G CAUCA...ACU-3'@LB@ CUUCA UCA GG C AUUG C UGU C CAGC GUUCC GUCACUUUC UA CUUC@LB@ ||||| ||| || | |||| | ||| | |||| ||||| ||||||||| :| ||||@LB@ GAAGU AGU CC G UAAC G ACA G GUCG CAAGG CAGUGAAAG GU GAAG@LB@3'-AUU...AAUGA UGU U U UA G C UU UAUAUUACAA A A UUUCA...CAA-5'@LB@ | |@LB@ 166 98@LB@@LB@@LB@Energy -20.00 kcal/mol@LB@Hybridization Energy -43.9371 kcal/mol@LB@Unfolding Energy - mRNA 8.77558 kcal/mol@LB@Unfolding Energy - sRNA 17.9339 kcal/mol@LB@@LB@Position - mRNA 16 -- 82@LB@Position - sRNA 99 -- 165@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 12 |
0.0004273 |
0.1011 |
bsu13640 |
spo0E |
-21.66 |
0.001221 |
136 -- 180 |
32 -- 78 |
aspartyl-phosphate phosphatase Spo0E |
|
_____________135________________________________________________181\n_____________|__________________________________________________|\n5'-GGC...UAAUC______AAU__________A______A___AAA_________________AGCGG...AUG-3'\n______________UGUAAU____GC__ACAAU___ACCC_AUC___CUUGUUUCCUAUUUCUU\n______________||:|||____||__|||||___||||_|||___|||:||:||:|||||||\n______________ACGUUA____CG__UGUUA___UGGG_UAG___GAAUAAGGGGUAAAGAA\n3'-AUU...AAGCA______GAAC__UU_____GCA________A___________________ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________79_________________________________________________31\n |
172 -- 178 |
34 -- 40 |
-36.2602 kcal/mol |
3.78665 kcal/mol |
13.8985 kcal/mol |
135 181@LB@ | |@LB@5'-GGC...UAAUC AAU A A AAA AGCGG...AUG-3'@LB@ UGUAAU GC ACAAU ACCC AUC CUUGUUUCCUAUUUCUU@LB@ ||:||| || ||||| |||| ||| |||:||:||:|||||||@LB@ ACGUUA CG UGUUA UGGG UAG GAAUAAGGGGUAAAGAA@LB@3'-AUU...AAGCA GAAC UU GCA A ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -36.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.78665 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 136 -- 180@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 13 |
0.0004662 |
0.1011 |
bsu39950 |
yxaJ |
-7.42 |
0.718209 |
218 -- 252 |
31 -- 81 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15743949 15849754 16850406; Product type pm: membrane component' |
|
_____________217_________________________________________253\n_____________|___________________________________________|\n5'-CAU...AAUAG___G______A__A_____________________GC______UUUUU...CGG-3'\n______________CGU_GCGAUC_UG_CAA__________CCAUUUCU__GUUUCU\n______________|||_||:|||_||_|||__________||||:|||__:||:|:\n______________GCA_CGUUAG_AC_GUU__________GGUAGAGA__UAAGGG\n3'-AUU...CCGAA___A______A__C___UGUUAGCAUG________A_______GUAAA...CAA-5'\n_____________|___________________________________________|\n_____________82__________________________________________30\n |
236 -- 242 |
47 -- 53 |
-25.2058 kcal/mol |
7.74885 kcal/mol |
10.909 kcal/mol |
217 253@LB@ | |@LB@5'-CAU...AAUAG G A A GC UUUUU...CGG-3'@LB@ CGU GCGAUC UG CAA CCAUUUCU GUUUCU@LB@ ||| ||:||| || ||| ||||:||| :||:|:@LB@ GCA CGUUAG AC GUU GGUAGAGA UAAGGG@LB@3'-AUU...CCGAA A A C UGUUAGCAUG A GUAAA...CAA-5'@LB@ | |@LB@ 82 30@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.2058 kcal/mol@LB@Unfolding Energy - mRNA 7.74885 kcal/mol@LB@Unfolding Energy - sRNA 10.909 kcal/mol@LB@@LB@Position - mRNA 218 -- 252@LB@Position - sRNA 31 -- 81@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 14 |
0.0004671 |
0.1011 |
bsu04470 |
dctP |
-11.58 |
0.162472 |
124 -- 147 |
15 -- 44 |
C4-dicarboxylate transport protein |
bsu02340 bsu10220 |
_____________123____________________________148\n_____________|______________________________|\n5'-AAA...UAAAC_______GA__________A__________AUCAU...AAC-3'\n______________UUCCCCA___CU_____GU_UGAAAACGCU\n______________|||||||___||_____:|_||||||||||\n______________AAGGGGU___GA_____UA_ACUUUUGCGA\n3'-AUU...AGAAU_______AAA__AACUU__A__________AUUAA...CAA-5'\n_____________|______________________________|\n_____________45_____________________________14\n |
141 -- 147 |
15 -- 21 |
-23.6241 kcal/mol |
3.82582 kcal/mol |
8.2119 kcal/mol |
123 148@LB@ | |@LB@5'-AAA...UAAAC GA A AUCAU...AAC-3'@LB@ UUCCCCA CU GU UGAAAACGCU@LB@ ||||||| || :| ||||||||||@LB@ AAGGGGU GA UA ACUUUUGCGA@LB@3'-AUU...AGAAU AAA AACUU A AUUAA...CAA-5'@LB@ | |@LB@ 45 14@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.6241 kcal/mol@LB@Unfolding Energy - mRNA 3.82582 kcal/mol@LB@Unfolding Energy - sRNA 8.2119 kcal/mol@LB@@LB@Position - mRNA 124 -- 147@LB@Position - sRNA 15 -- 44@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 15 |
0.0004798 |
0.1011 |
bsu04380 |
ydaT |
-18.00 |
0.007663 |
13 -- 34 |
33 -- 57 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________12________________________35\n_____________|_________________________|\n5'-AAC...CUUUU____G____________________CUAUC...AAG-3'\n______________UGCU_AUCUU___UUUCCCAUUUCU\n______________|:|:_||||:___||:|||||||||\n______________AUGG_UAGAG___AAGGGGUAAAGA\n3'-AUU...UUAGC____G_____AAU____________AACUU...CAA-5'\n_____________|_________________________|\n_____________58________________________32\n |
28 -- 34 |
33 -- 39 |
-24.9146 kcal/mol |
0.801206 kcal/mol |
9.08864 kcal/mol |
12 35@LB@ | |@LB@5'-AAC...CUUUU G CUAUC...AAG-3'@LB@ UGCU AUCUU UUUCCCAUUUCU@LB@ |:|: ||||: ||:|||||||||@LB@ AUGG UAGAG AAGGGGUAAAGA@LB@3'-AUU...UUAGC G AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -24.9146 kcal/mol@LB@Unfolding Energy - mRNA 0.801206 kcal/mol@LB@Unfolding Energy - sRNA 9.08864 kcal/mol@LB@@LB@Position - mRNA 13 -- 34@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 16 |
0.0004911 |
0.1011 |
bsu34650 |
yvdC |
-21.31 |
0.001462 |
17 -- 94 |
101 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________16_______________________________________________________________________95\n_____________|________________________________________________________________________|\n5'-AUA...UUUUA___G_______UCCCC_____U______C_________AAUACA____A________U____C__G______CCGCA...AGG-3'\n______________UAC_CUUCAUU_____CAGGG__UUGAU_____CCGCA________CA_AUG__GUU_UCAU_UU_UCAUCU\n______________|||_||||||:_____||||:__||||:_____|||||________||_||:__|||_|||:_||_||||||\n______________AUG_GAAGUAG_____GUCCU__AACUG_____GGCGU________GU_UAU__CAA_AGUG_AA_AGUAGA\n3'-AUU...AAAAA___A_______UU________GU_____UAACA_____CGUUCAAG__A___UA___C____A__G______AGUUU...CAA-5'\n_____________|________________________________________________________________________|\n_____________186______________________________________________________________________100\n |
36 -- 42 |
159 -- 165 |
-36.2616 kcal/mol |
8.0324 kcal/mol |
15.7762 kcal/mol |
16 95@LB@ | |@LB@5'-AUA...UUUUA G UCCCC U C AAUACA A U C G CCGCA...AGG-3'@LB@ UAC CUUCAUU CAGGG UUGAU CCGCA CA AUG GUU UCAU UU UCAUCU@LB@ ||| ||||||: ||||: ||||: ||||| || ||: ||| |||: || ||||||@LB@ AUG GAAGUAG GUCCU AACUG GGCGU GU UAU CAA AGUG AA AGUAGA@LB@3'-AUU...AAAAA A UU GU UAACA CGUUCAAG A UA C A G AGUUU...CAA-5'@LB@ | |@LB@ 186 100@LB@@LB@@LB@Energy -21.31 kcal/mol@LB@Hybridization Energy -36.2616 kcal/mol@LB@Unfolding Energy - mRNA 8.0324 kcal/mol@LB@Unfolding Energy - sRNA 15.7762 kcal/mol@LB@@LB@Position - mRNA 17 -- 94@LB@Position - sRNA 101 -- 185@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 159 -- 165@LB@ |
| 17 |
0.0005293 |
0.1011 |
bsu19390 |
yojN |
-14.35 |
0.045317 |
34 -- 87 |
125 -- 170 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15491156; Product type pe : enzyme' |
|
_____________33_______________________________________________________88\n_____________|________________________________________________________|\n5'-AAC...UGCAU_____A_____G____AGC_____AUUAUC_____AAC___AA_____________GUGCG...CUA-3'\n______________UUAUU_UUCAU_AACA___GGACG______UGACA____CC__GCGGCAA_UUCCG\n______________|||:|_|||||_||||___||||:______|||||____||__||:||||_||||:\n______________AAUGA_AAGUA_UUGU___CCUGU______ACUGU____GG__CGUCGUU_AAGGU\n3'-AUU...AAAAA_____G_____G____________A__________AACA___________C_____AUAUU...CAA-5'\n_____________|________________________________________________________|\n_____________171______________________________________________________124\n |
76 -- 82 |
131 -- 137 |
-33.3587 kcal/mol |
7.78061 kcal/mol |
10.3745 kcal/mol |
33 88@LB@ | |@LB@5'-AAC...UGCAU A G AGC AUUAUC AAC AA GUGCG...CUA-3'@LB@ UUAUU UUCAU AACA GGACG UGACA CC GCGGCAA UUCCG@LB@ |||:| ||||| |||| ||||: ||||| || ||:|||| ||||:@LB@ AAUGA AAGUA UUGU CCUGU ACUGU GG CGUCGUU AAGGU@LB@3'-AUU...AAAAA G G A AACA C AUAUU...CAA-5'@LB@ | |@LB@ 171 124@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -33.3587 kcal/mol@LB@Unfolding Energy - mRNA 7.78061 kcal/mol@LB@Unfolding Energy - sRNA 10.3745 kcal/mol@LB@@LB@Position - mRNA 34 -- 87@LB@Position - sRNA 125 -- 170@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 18 |
0.0005418 |
0.1011 |
bsu07080 |
yesZ |
-22.48 |
0.000806 |
260 -- 300 |
118 -- 160 |
beta-galactosidase YesZ |
|
_____________259_______________301\n_____________|_________________|\n5'-GAU...ACGAU_________________UCAUG...AUG-3'\n______________UCAGCAGGACAUUGACA\n______________|||:|||||||||||||\n______________AGUUGUCCUGUAACUGU\n3'-AUU...GAAGU_________________AACAG...CAA-5'\n_____________|_________________|\n_____________161_______________117\n |
270 -- 276 |
144 -- 150 |
-28.5551 kcal/mol |
3.65993 kcal/mol |
6.86594 kcal/mol |
259 301@LB@ | |@LB@5'-GAU...ACGAU UCAUG...AUG-3'@LB@ UCAGCAGGACAUUGACA@LB@ |||:|||||||||||||@LB@ AGUUGUCCUGUAACUGU@LB@3'-AUU...GAAGU AACAG...CAA-5'@LB@ | |@LB@ 161 117@LB@@LB@@LB@Energy -22.48 kcal/mol@LB@Hybridization Energy -28.5551 kcal/mol@LB@Unfolding Energy - mRNA 3.65993 kcal/mol@LB@Unfolding Energy - sRNA 6.86594 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 118 -- 160@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 144 -- 150@LB@ |
| 19 |
0.0005622 |
0.1011 |
bsu33310 |
fhuB |
-20.25 |
0.002499 |
30 -- 116 |
99 -- 184 |
iron(3+)-hydroxamate import system permease protein FhuB |
bsu01620 |
_____________29__________________________________________________________________117\n_____________|___________________________________________________________________|\n5'-AGG...UGCAA___A__________AAAAA____________UCC_______UU_____U___G______A_______ACCUU...AAG-3'\n______________UCA_UAACAGGGCA___________CGCGGC___GAGUUUC__GUAUA_AUG__GUCAU__UCUCAU\n______________|||_:||||||:||___________|||:||___:||||:|__:||||_|||__||||:__||||||\n______________AGU_GUUGUCCUGU___________GCGUCG___UUCAAGG__UAUAU_UAC__CAGUG__AGAGUA\n3'-AUU...UGAGA___A__________AACUGUAACAG___________________________AA_____AA______GAAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________185_________________________________________________________________98\n |
80 -- 86 |
126 -- 132 |
-44.6592 kcal/mol |
13.3222 kcal/mol |
14.475 kcal/mol |
29 117@LB@ | |@LB@5'-AGG...UGCAA A AAAAA UCC UU U G A ACCUU...AAG-3'@LB@ UCA UAACAGGGCA CGCGGC GAGUUUC GUAUA AUG GUCAU UCUCAU@LB@ ||| :||||||:|| |||:|| :||||:| :|||| ||| ||||: ||||||@LB@ AGU GUUGUCCUGU GCGUCG UUCAAGG UAUAU UAC CAGUG AGAGUA@LB@3'-AUU...UGAGA A AACUGUAACAG AA AA GAAGU...CAA-5'@LB@ | |@LB@ 185 98@LB@@LB@@LB@Energy -20.25 kcal/mol@LB@Hybridization Energy -44.6592 kcal/mol@LB@Unfolding Energy - mRNA 13.3222 kcal/mol@LB@Unfolding Energy - sRNA 14.475 kcal/mol@LB@@LB@Position - mRNA 30 -- 116@LB@Position - sRNA 99 -- 184@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 126 -- 132@LB@ |
| 20 |
0.0005654 |
0.1011 |
bsu03960 |
ycnK |
-22.14 |
0.000955 |
26 -- 173 |
12 -- 134 |
DeoR family transcriptional regulator |
|
_____________25________________________________________________________________________________________________________________________________________________________174\n_____________|_________________________________________________________________________________________________________________________________________________________|\n5'-AGG...GUUUC_______GGGUAUUCC_________AUUC_____GUCUAUUAUAC______CCCUUC__UU_C__________U__________C___UUUUCACAUUUUUU__________C__A____________C___A______CCUCU_________AUAGA...AAA-3'\n______________UUUCAUA_________UCACUUUCU____CAUCU___________CAGAGU______UG__U_GUUUUGUUGC_GUU____CAA_ACA______________AUC__AUCCA_UU_CUUG_UCUCCGU_UCU___AAAU______ACGCUUAA\n______________||:||||_________|||||||||____|||||___________||:|||______||__|_|:||:|||||_:|:____|||_|||______________|||__|:|||_:|_|||:_||:||:|_|||___||||______||||||||\n______________AAGGUAU_________AGUGAAAGA____GUAGA___________GUUUCA______AC__A_CGAAGCAACG_UAG____GUU_UGU______________UAG__UGGGU_GA_GAAU_AGGGGUA_AGA___UUUA______UGCGAAUU\n3'-AUU...CGUUC_______AUUACAAC___________________A________________UU______UU_C__________U___AACC________________________CA_____A_______A_______A___AAC____AACUUU________AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________________________________________|\n_____________135_______________________________________________________________________________________________________________________________________________________11\n |
167 -- 173 |
12 -- 18 |
-57.1101 kcal/mol |
10.5528 kcal/mol |
25.6552 kcal/mol |
25 174@LB@ | |@LB@5'-AGG...GUUUC GGGUAUUCC AUUC GUCUAUUAUAC CCCUUC UU C U C UUUUCACAUUUUUU C A C A CCUCU AUAGA...AAA-3'@LB@ UUUCAUA UCACUUUCU CAUCU CAGAGU UG U GUUUUGUUGC GUU CAA ACA AUC AUCCA UU CUUG UCUCCGU UCU AAAU ACGCUUAA@LB@ ||:|||| ||||||||| ||||| ||:||| || | |:||:||||| :|: ||| ||| ||| |:||| :| |||: ||:||:| ||| |||| ||||||||@LB@ AAGGUAU AGUGAAAGA GUAGA GUUUCA AC A CGAAGCAACG UAG GUU UGU UAG UGGGU GA GAAU AGGGGUA AGA UUUA UGCGAAUU@LB@3'-AUU...CGUUC AUUACAAC A UU UU C U AACC CA A A A AAC AACUUU AAAGA...CAA-5'@LB@ | |@LB@ 135 11@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -57.1101 kcal/mol@LB@Unfolding Energy - mRNA 10.5528 kcal/mol@LB@Unfolding Energy - sRNA 25.6552 kcal/mol@LB@@LB@Position - mRNA 26 -- 173@LB@Position - sRNA 12 -- 134@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 12 -- 18@LB@ |
