| 41 |
0.00131 |
0.1206 |
bsu01580 |
ybaR |
-15.69 |
0.023818 |
44 -- 97 |
34 -- 84 |
sulfate transporter YbaR |
|
_____________43________________________________________________________________98\n_____________|_________________________________________________________________|\n5'-CAG...UUAUU____UACU______A__A___CUC____CCU___U_____A_______A_GU_____________UCUCC...CGA-3'\n______________AUGA____CUUUGU_UG_CAA___CUUG___CAA_ACAAU__UACUCA_C_____UUCCCCGUUU\n______________||||____|||:||_||_|||___||||___|||_|||||__|||:||_|_____||||||:|||\n______________UACU____GAAGCA_AC_GUU___GAAC___GUU_UGUUA__AUGGGU_G_____AAGGGGUAAA\n3'-AUU...UUCAU____UACC_____________A______C___________GC______A_AGAAU__________GAAAC...CAA-5'\n_____________|_________________________________________________________________|\n_____________85________________________________________________________________33\n |
90 -- 96 |
35 -- 41 |
-34.7178 kcal/mol |
7.59764 kcal/mol |
14.4179 kcal/mol |
43 98@LB@ | |@LB@5'-CAG...UUAUU UACU A A CUC CCU U A A GU UCUCC...CGA-3'@LB@ AUGA CUUUGU UG CAA CUUG CAA ACAAU UACUCA C UUCCCCGUUU@LB@ |||| |||:|| || ||| |||| ||| ||||| |||:|| | ||||||:|||@LB@ UACU GAAGCA AC GUU GAAC GUU UGUUA AUGGGU G AAGGGGUAAA@LB@3'-AUU...UUCAU UACC A C GC A AGAAU GAAAC...CAA-5'@LB@ | |@LB@ 85 33@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -34.7178 kcal/mol@LB@Unfolding Energy - mRNA 7.59764 kcal/mol@LB@Unfolding Energy - sRNA 14.4179 kcal/mol@LB@@LB@Position - mRNA 44 -- 97@LB@Position - sRNA 34 -- 84@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 42 |
0.001312 |
0.1206 |
bsu39060 |
citH |
-14.25 |
0.047679 |
3 -- 65 |
120 -- 184 |
citrate transporter |
bsu26860 bsu07610 |
_____________2___________________________________________________________66\n_____________|___________________________________________________________|\n5'-GUC...UCCCC_______AAACGAAACAU__U____C_____U_______________UUC_________ACUGC...UUG-3'\n______________CUUUUUA___________UC_ACAG_ACAUU_AC_____CCGUGGCG___UUCAUAUAA\n______________||:||:|___________||_||||_|||||_||_____|||::||:___|:|||||||\n______________GAGAAGU___________AG_UGUC_UGUAA_UG_____GGCGUCGU___AGGUAUAUU\n3'-AUU...AAAAU____________________U____C_____C__UAACA________UCA_________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________185_________________________________________________________119\n |
59 -- 65 |
120 -- 126 |
-29.4475 kcal/mol |
5.73383 kcal/mol |
10.5645 kcal/mol |
2 66@LB@ | |@LB@5'-GUC...UCCCC AAACGAAACAU U C U UUC ACUGC...UUG-3'@LB@ CUUUUUA UC ACAG ACAUU AC CCGUGGCG UUCAUAUAA@LB@ ||:||:| || |||| ||||| || |||::||: |:|||||||@LB@ GAGAAGU AG UGUC UGUAA UG GGCGUCGU AGGUAUAUU@LB@3'-AUU...AAAAU U C C UAACA UCA ACAAC...CAA-5'@LB@ | |@LB@ 185 119@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -29.4475 kcal/mol@LB@Unfolding Energy - mRNA 5.73383 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 3 -- 65@LB@Position - sRNA 120 -- 184@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 120 -- 126@LB@ |
| 43 |
0.00135 |
0.1206 |
bsu10230 |
yhfH |
-10.18 |
0.291514 |
18 -- 110 |
27 -- 139 |
Evidence 6: Doubtful CDS |
|
_____________17_____________________________________________________________________________________________________________________111\n_____________|______________________________________________________________________________________________________________________|\n5'-CAU...GAAAA____CAU________________C_____A______A________________UCCUC_______________UU____AA_____GU___CC___AAUAUA_________C______AAAGC...AUG-3'\n______________CCGC___AGCA___UCCG_AUAA___UGU_ACUUUC____________UAAUG_____CU________AUCUU__CAAA__AAUUG__CCU__UUC______CCCAUUUUU_UUGAAA\n______________||||___||||___|||:_||||___|||_||||||____________|||||_____||________|||||__||||__|||:|__||:__:||______|||||||:|_||||||\n______________GGCG___UCGU___AGGU_UAUU___ACA_UGAAAG____________AUUAC_____GA________UAGAA__GUUU__UUAGC__GGG__GAG______GGGUAAAGA_AACUUU\n3'-AUU...UAACA___________UCA____A____ACA___G______AGUAGAAGUUUC_____UUACC__AGCAACGU_____CC____G______AU___UA___AAUAAG________________AAACU...CAA-5'\n_____________|______________________________________________________________________________________________________________________|\n_____________140____________________________________________________________________________________________________________________26\n |
96 -- 102 |
34 -- 40 |
-47.8615 kcal/mol |
11.539 kcal/mol |
28.2686 kcal/mol |
17 111@LB@ | |@LB@5'-CAU...GAAAA CAU C A A UCCUC UU AA GU CC AAUAUA C AAAGC...AUG-3'@LB@ CCGC AGCA UCCG AUAA UGU ACUUUC UAAUG CU AUCUU CAAA AAUUG CCU UUC CCCAUUUUU UUGAAA@LB@ |||| |||| |||: |||| ||| |||||| ||||| || ||||| |||| |||:| ||: :|| |||||||:| ||||||@LB@ GGCG UCGU AGGU UAUU ACA UGAAAG AUUAC GA UAGAA GUUU UUAGC GGG GAG GGGUAAAGA AACUUU@LB@3'-AUU...UAACA UCA A ACA G AGUAGAAGUUUC UUACC AGCAACGU CC G AU UA AAUAAG AAACU...CAA-5'@LB@ | |@LB@ 140 26@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -47.8615 kcal/mol@LB@Unfolding Energy - mRNA 11.539 kcal/mol@LB@Unfolding Energy - sRNA 28.2686 kcal/mol@LB@@LB@Position - mRNA 18 -- 110@LB@Position - sRNA 27 -- 139@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 44 |
0.001404 |
0.1206 |
bsu30660 |
ytkA |
-11.27 |
0.185588 |
215 -- 238 |
164 -- 186 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type lp: lipoprotein' |
|
_____________214_________239\n_____________|___________|\n5'-CAU...GCGCU___________GCGUU...UUU-3'\n______________AAACGUUUAAU\n______________|||||:|||||\n______________UUUGCGAAUUA\n3'-AUU...AAACU___________AAGAA...CAA-5'\n_____________|___________|\n_____________187_________163\n |
23 -- 29 |
11 -- 17 |
-8.86173 kcal/mol |
2.03186 kcal/mol |
2.83264 kcal/mol |
214 239@LB@ | |@LB@5'-CAU...GCGCU GCGUU...UUU-3'@LB@ AAACGUUUAAU@LB@ |||||:|||||@LB@ UUUGCGAAUUA@LB@3'-AUU...AAACU AAGAA...CAA-5'@LB@ | |@LB@ 187 163@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -8.86173 kcal/mol@LB@Unfolding Energy - mRNA 2.03186 kcal/mol@LB@Unfolding Energy - sRNA 2.83264 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 164 -- 186@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 45 |
0.001428 |
0.1206 |
bsu27290 |
yrzA |
-10.49 |
0.257926 |
1 -- 17 |
111 -- 136 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________0_________________18\n_____________|_________________|\n_______5'-CGGC_________________ACUCC...ACA-3'\n______________CCAUAU____UUGUCAC\n______________||||||____|||||||\n______________GGUAUA____AACAGUG\n3'-AUU...UUCAA______UUAC_______AAAGA...CAA-5'\n_____________|_________________|\n_____________137_______________110\n |
11 -- 17 |
111 -- 117 |
-14.7924 kcal/mol |
0.950105 kcal/mol |
3.76381 kcal/mol |
0 18@LB@ | |@LB@ 5'-CGGC ACUCC...ACA-3'@LB@ CCAUAU UUGUCAC@LB@ |||||| |||||||@LB@ GGUAUA AACAGUG@LB@3'-AUU...UUCAA UUAC AAAGA...CAA-5'@LB@ | |@LB@ 137 110@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -14.7924 kcal/mol@LB@Unfolding Energy - mRNA 0.950105 kcal/mol@LB@Unfolding Energy - sRNA 3.76381 kcal/mol@LB@@LB@Position - mRNA 1 -- 17@LB@Position - sRNA 111 -- 136@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 111 -- 117@LB@ |
| 46 |
0.001434 |
0.1206 |
bsu07700 |
nagP |
-14.91 |
0.034715 |
11 -- 49 |
31 -- 62 |
PTS system-N-acetylglucosamine-specific transporter subunit EIICB |
|
_____________10______________________________________50\n_____________|_______________________________________|\n5'-UCU...UUCUU______UUGUUACAA______G_C______GC_______UUAAA...UAU-3'\n______________GAUCGU_________UCAUCU_U_AUUCCC__UUUCUUU\n______________:|||||_________:|||||_|_||||||__|||||||\n______________UUAGCA_________GGUAGA_A_UAAGGG__AAAGAAA\n3'-AUU...GUUUG______UG_____________G_A______GU_______CUUUA...CAA-5'\n_____________|_______________________________________|\n_____________63______________________________________30\n |
43 -- 49 |
31 -- 37 |
-26.4462 kcal/mol |
2.72756 kcal/mol |
10.7322 kcal/mol |
10 50@LB@ | |@LB@5'-UCU...UUCUU UUGUUACAA G C GC UUAAA...UAU-3'@LB@ GAUCGU UCAUCU U AUUCCC UUUCUUU@LB@ :||||| :||||| | |||||| |||||||@LB@ UUAGCA GGUAGA A UAAGGG AAAGAAA@LB@3'-AUU...GUUUG UG G A GU CUUUA...CAA-5'@LB@ | |@LB@ 63 30@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -26.4462 kcal/mol@LB@Unfolding Energy - mRNA 2.72756 kcal/mol@LB@Unfolding Energy - sRNA 10.7322 kcal/mol@LB@@LB@Position - mRNA 11 -- 49@LB@Position - sRNA 31 -- 62@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 48 |
0.001494 |
0.1206 |
bsu33660 |
rghRA |
-13.24 |
0.076349 |
28 -- 146 |
39 -- 166 |
HTH-type transcriptional repressor RghR |
bsu33670 |
_____________27_________________________________________________147\n_____________|__________________________________________________|\n5'-UAU...AUUAC_____A____AAC______U___U___U_______A____A_C_______UUUAG...UCU-3'\n______________GGCUU_UGUU____UUUUG_CAA_ACA_UU___CC_GUCU_C_UAUUCCC\n______________|||||_:|||____|:|||_|||_|||_|:___||_:|||_|_|||||||\n______________CCGAA_GCAA____AGAAC_GUU_UGU_AG___GG_UAGA_G_AUAAGGG\n3'-AUU...ACUUA__________CGUU_____C_______U__CAU__G______A_______GUAAA...CAA-5'\n_____________|__________________________________________________|\n_____________167________________________________________________38\n |
139 -- 145 |
40 -- 46 |
-27.8785 kcal/mol |
6.21563 kcal/mol |
10.9223 kcal/mol |
27 147@LB@ | |@LB@5'-UAU...AUUAC A AAC U U U A A C UUUAG...UCU-3'@LB@ GGCUU UGUU UUUUG CAA ACA UU CC GUCU C UAUUCCC@LB@ ||||| :||| |:||| ||| ||| |: || :||| | |||||||@LB@ CCGAA GCAA AGAAC GUU UGU AG GG UAGA G AUAAGGG@LB@3'-AUU...ACUUA CGUU C U CAU G A GUAAA...CAA-5'@LB@ | |@LB@ 167 38@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -27.8785 kcal/mol@LB@Unfolding Energy - mRNA 6.21563 kcal/mol@LB@Unfolding Energy - sRNA 10.9223 kcal/mol@LB@@LB@Position - mRNA 28 -- 146@LB@Position - sRNA 39 -- 166@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 49 |
0.001587 |
0.1212 |
bsu40240 |
yycS |
-16.07 |
0.019817 |
5 -- 79 |
35 -- 113 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________4_________________________________________________________________________________80\n_____________|_________________________________________________________________________________|\n_______5'-AAUA_____G______G______UCCUCC____U_______C__U_____________A___U___U____AA___AA_______AUUCA...GCA-3'\n______________CGCUU_UUUCAU_UUCAAA______GAUG_UUUC_UU_CA_UUUU_____ACAA_UGU_CUC_UCUC__UAU__CCUAUUU\n______________|:|||_|:||||_||||||______:|||_:|||_||_||_|:||_____||||_:||_|:|_||||__|||__||:||||\n______________GUGAA_AGAGUA_AAGUUU______UUAC_GAAG_AA_GU_AGAA_____UGUU_GCA_GGG_AGAG__AUA__GGGUAAA\n3'-AUU...CAACA____________G______CAUUAC____C____C__C__U____CCGUU____A___U___U____A____AG_______GAAAC...CAA-5'\n_____________|_________________________________________________________________________________|\n_____________114_______________________________________________________________________________34\n |
73 -- 79 |
35 -- 41 |
-40.7208 kcal/mol |
6.49365 kcal/mol |
21.9183 kcal/mol |
4 80@LB@ | |@LB@ 5'-AAUA G G UCCUCC U C U A U U AA AA AUUCA...GCA-3'@LB@ CGCUU UUUCAU UUCAAA GAUG UUUC UU CA UUUU ACAA UGU CUC UCUC UAU CCUAUUU@LB@ |:||| |:|||| |||||| :||| :||| || || |:|| |||| :|| |:| |||| ||| ||:||||@LB@ GUGAA AGAGUA AAGUUU UUAC GAAG AA GU AGAA UGUU GCA GGG AGAG AUA GGGUAAA@LB@3'-AUU...CAACA G CAUUAC C C C U CCGUU A U U A AG GAAAC...CAA-5'@LB@ | |@LB@ 114 34@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -40.7208 kcal/mol@LB@Unfolding Energy - mRNA 6.49365 kcal/mol@LB@Unfolding Energy - sRNA 21.9183 kcal/mol@LB@@LB@Position - mRNA 5 -- 79@LB@Position - sRNA 35 -- 113@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 50 |
0.001627 |
0.1212 |
bsu38130 |
ywcE |
-9.91 |
0.324646 |
1 -- 15 |
39 -- 56 |
spore morphogenesis and germination protein YwcE |
|
_____________0_______________________________________________________________16\n_____________|_______________________________________________________________|\n5'-GCC...AAAAA_____ACA______________A__A___A______U____________UU____U_______AUCAC...CAA-3'\n______________CAAUC_____AAACAG____AC_CA_CUC__GUUCC_CUAUUUC____A__UUUG_AAACGUU\n______________|||||_____|||||:____||_||_|||__:||||_|:|||||____|__||||_|||||:|\n______________GUUAG_____UUUGUU____UG_GU_GAG__UAAGG_GGUAAAG____U__AAAC_UUUGCGA\n3'-AUU...GCAAC_____AACCG______AGCA__G__A___AA_____________AAAC_UU____U_______AUUAA...CAA-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________38\n |
170 -- 176 |
15 -- 21 |
-29.8413 kcal/mol |
5.55001 kcal/mol |
15.9749 kcal/mol |
0 16@LB@ | |@LB@5'-GCC...AAAAA ACA A A A U UU U AUCAC...CAA-3'@LB@ CAAUC AAACAG AC CA CUC GUUCC CUAUUUC A UUUG AAACGUU@LB@ ||||| |||||: || || ||| :|||| |:||||| | |||| |||||:|@LB@ GUUAG UUUGUU UG GU GAG UAAGG GGUAAAG U AAAC UUUGCGA@LB@3'-AUU...GCAAC AACCG AGCA G A AA AAAC UU U AUUAA...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -29.8413 kcal/mol@LB@Unfolding Energy - mRNA 5.55001 kcal/mol@LB@Unfolding Energy - sRNA 15.9749 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 15 -- 21@LB@ |
