| 1 |
1.123e-05 |
0.04352 |
bsu13990 |
kinA |
-26.46 |
0.000103 |
182 -- 297 |
38 -- 181 |
sporulation kinase A |
bsu14490 bsu13530 |
_____________181___________________________________________________________________________________________________________________________298\n_____________|_____________________________________________________________________________________________________________________________|\n5'-CUA...GAGGG_____GUGG________________________________________________AA______________CAAAAACCGAUA___A_____________CUC____G____G____A_____AUAUC...ACU-3'\n______________AUUCU_____AACAGGAUA___________CGCAGCA_______________UGUUA____C_CA_CUUCAAA____________UUC__UGCAGUCUUGGC___UAAU_G_AC_CAUC_UUUAU\n______________|:|||_____|||||||:|___________|||||||_______________|||:|____|_||_|||||||____________|||__||||:|||||||___:|||_|_||_||||_:||||\n______________UGAGA_____UUGUCCUGU___________GCGUCGU_______________ACAGU____G_GU_GAAGUUU____________AAG__ACGUUAGAACCG___GUUA_C_UG_GUAG_GAAUA\n3'-AUU...AAAAA_____AGUAG_________AACUGUAACAG_______UCAAGGUAUAUUACA_____GAAA_A__A_______CAUUACUUACCG___CA____________UUU____G_A__G____A_____AGGGG...CAA-5'\n_____________|_____________________________________________________________________________________________________________________________|\n_____________182___________________________________________________________________________________________________________________________37\n |
259 -- 265 |
67 -- 73 |
-65.6544 kcal/mol |
17.7451 kcal/mol |
29.7341 kcal/mol |
181 298@LB@ | |@LB@5'-CUA...GAGGG GUGG AA CAAAAACCGAUA A CUC G G A AUAUC...ACU-3'@LB@ AUUCU AACAGGAUA CGCAGCA UGUUA C CA CUUCAAA UUC UGCAGUCUUGGC UAAU G AC CAUC UUUAU@LB@ |:||| |||||||:| ||||||| |||:| | || ||||||| ||| ||||:||||||| :||| | || |||| :||||@LB@ UGAGA UUGUCCUGU GCGUCGU ACAGU G GU GAAGUUU AAG ACGUUAGAACCG GUUA C UG GUAG GAAUA@LB@3'-AUU...AAAAA AGUAG AACUGUAACAG UCAAGGUAUAUUACA GAAA A A CAUUACUUACCG CA UUU G A G A AGGGG...CAA-5'@LB@ | |@LB@ 182 37@LB@@LB@@LB@Energy -26.46 kcal/mol@LB@Hybridization Energy -65.6544 kcal/mol@LB@Unfolding Energy - mRNA 17.7451 kcal/mol@LB@Unfolding Energy - sRNA 29.7341 kcal/mol@LB@@LB@Position - mRNA 182 -- 297@LB@Position - sRNA 38 -- 181@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 5 |
0.0001198 |
0.08823 |
bsu33680 |
yvaP |
-23.88 |
0.000393 |
26 -- 134 |
34 -- 167 |
HTH-type transcriptional regulator YvaP |
|
_____________25___________________________________________________________________________________________________________________________________________________________135\n_____________|____________________________________________________________________________________________________________________________________________________________|\n5'-UUU...AACAU_______A______________AAA____________AUA________________A_______________AGCAAAAAAAC__________C_____C__UC______C___________CU____A______AUCAAUC______________CAUGC...CGC-3'\n______________CUC_UCA__AGCAGGAUAUUGA_____UCU_CAGCAA___CU___________UCG_UUUUUUGUCUUCAGA___________GC______GC__UCUU__C__AUAAUC___CCUGUUUCU__UUCU_UAUUUU______________ACGCUUG\n______________|||_|||__|:|||||:|||||_____||:_||||||___|:___________||:_|||:|::||||||:|___________||______||__||||__|__|:||||___||::|:|||__|||:_:||||:______________||||||:\n______________GAG_AGU__UUGUCCUGUAACU_____AGG_GUCGUU___GG___________AGU_AAAGAGUAGAAGUUU___________CG______CG__AGAA__G__UGUUAG___GGGUAGAGA__AAGG_GUAAAG______________UGCGAAU\n3'-AUU...AAAAU___A___AG_____________GUAAC___C______CAA__UAUAUUACAAC___G_______________CAUUACUUAC___AAGCAA__UU____CC_UU______CAU_________AU____G______AAACUUUAAACUUU_______UAAAG...CAA-5'\n_____________|____________________________________________________________________________________________________________________________________________________________|\n_____________168__________________________________________________________________________________________________________________________________________________________33\n |
142 -- 148 |
13 -- 19 |
-70.4657 kcal/mol |
17.0109 kcal/mol |
33.4152 kcal/mol |
25 135@LB@ | |@LB@5'-UUU...AACAU A AAA AUA A AGCAAAAAAAC C C UC C CU A AUCAAUC CAUGC...CGC-3'@LB@ CUC UCA AGCAGGAUAUUGA UCU CAGCAA CU UCG UUUUUUGUCUUCAGA GC GC UCUU C AUAAUC CCUGUUUCU UUCU UAUUUU ACGCUUG@LB@ ||| ||| |:|||||:||||| ||: |||||| |: ||: |||:|::||||||:| || || |||| | |:|||| ||::|:||| |||: :||||: ||||||:@LB@ GAG AGU UUGUCCUGUAACU AGG GUCGUU GG AGU AAAGAGUAGAAGUUU CG CG AGAA G UGUUAG GGGUAGAGA AAGG GUAAAG UGCGAAU@LB@3'-AUU...AAAAU A AG GUAAC C CAA UAUAUUACAAC G CAUUACUUAC AAGCAA UU CC UU CAU AU G AAACUUUAAACUUU UAAAG...CAA-5'@LB@ | |@LB@ 168 33@LB@@LB@@LB@Energy -23.88 kcal/mol@LB@Hybridization Energy -70.4657 kcal/mol@LB@Unfolding Energy - mRNA 17.0109 kcal/mol@LB@Unfolding Energy - sRNA 33.4152 kcal/mol@LB@@LB@Position - mRNA 26 -- 134@LB@Position - sRNA 34 -- 167@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 18 |
0.0005418 |
0.1011 |
bsu07080 |
yesZ |
-22.48 |
0.000806 |
260 -- 300 |
118 -- 160 |
beta-galactosidase YesZ |
|
_____________259_______________301\n_____________|_________________|\n5'-GAU...ACGAU_________________UCAUG...AUG-3'\n______________UCAGCAGGACAUUGACA\n______________|||:|||||||||||||\n______________AGUUGUCCUGUAACUGU\n3'-AUU...GAAGU_________________AACAG...CAA-5'\n_____________|_________________|\n_____________161_______________117\n |
270 -- 276 |
144 -- 150 |
-28.5551 kcal/mol |
3.65993 kcal/mol |
6.86594 kcal/mol |
259 301@LB@ | |@LB@5'-GAU...ACGAU UCAUG...AUG-3'@LB@ UCAGCAGGACAUUGACA@LB@ |||:|||||||||||||@LB@ AGUUGUCCUGUAACUGU@LB@3'-AUU...GAAGU AACAG...CAA-5'@LB@ | |@LB@ 161 117@LB@@LB@@LB@Energy -22.48 kcal/mol@LB@Hybridization Energy -28.5551 kcal/mol@LB@Unfolding Energy - mRNA 3.65993 kcal/mol@LB@Unfolding Energy - sRNA 6.86594 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 118 -- 160@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 144 -- 150@LB@ |
| 20 |
0.0005654 |
0.1011 |
bsu03960 |
ycnK |
-22.14 |
0.000955 |
26 -- 173 |
12 -- 134 |
DeoR family transcriptional regulator |
|
_____________25________________________________________________________________________________________________________________________________________________________174\n_____________|_________________________________________________________________________________________________________________________________________________________|\n5'-AGG...GUUUC_______GGGUAUUCC_________AUUC_____GUCUAUUAUAC______CCCUUC__UU_C__________U__________C___UUUUCACAUUUUUU__________C__A____________C___A______CCUCU_________AUAGA...AAA-3'\n______________UUUCAUA_________UCACUUUCU____CAUCU___________CAGAGU______UG__U_GUUUUGUUGC_GUU____CAA_ACA______________AUC__AUCCA_UU_CUUG_UCUCCGU_UCU___AAAU______ACGCUUAA\n______________||:||||_________|||||||||____|||||___________||:|||______||__|_|:||:|||||_:|:____|||_|||______________|||__|:|||_:|_|||:_||:||:|_|||___||||______||||||||\n______________AAGGUAU_________AGUGAAAGA____GUAGA___________GUUUCA______AC__A_CGAAGCAACG_UAG____GUU_UGU______________UAG__UGGGU_GA_GAAU_AGGGGUA_AGA___UUUA______UGCGAAUU\n3'-AUU...CGUUC_______AUUACAAC___________________A________________UU______UU_C__________U___AACC________________________CA_____A_______A_______A___AAC____AACUUU________AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________________________________________|\n_____________135_______________________________________________________________________________________________________________________________________________________11\n |
167 -- 173 |
12 -- 18 |
-57.1101 kcal/mol |
10.5528 kcal/mol |
25.6552 kcal/mol |
25 174@LB@ | |@LB@5'-AGG...GUUUC GGGUAUUCC AUUC GUCUAUUAUAC CCCUUC UU C U C UUUUCACAUUUUUU C A C A CCUCU AUAGA...AAA-3'@LB@ UUUCAUA UCACUUUCU CAUCU CAGAGU UG U GUUUUGUUGC GUU CAA ACA AUC AUCCA UU CUUG UCUCCGU UCU AAAU ACGCUUAA@LB@ ||:|||| ||||||||| ||||| ||:||| || | |:||:||||| :|: ||| ||| ||| |:||| :| |||: ||:||:| ||| |||| ||||||||@LB@ AAGGUAU AGUGAAAGA GUAGA GUUUCA AC A CGAAGCAACG UAG GUU UGU UAG UGGGU GA GAAU AGGGGUA AGA UUUA UGCGAAUU@LB@3'-AUU...CGUUC AUUACAAC A UU UU C U AACC CA A A A AAC AACUUU AAAGA...CAA-5'@LB@ | |@LB@ 135 11@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -57.1101 kcal/mol@LB@Unfolding Energy - mRNA 10.5528 kcal/mol@LB@Unfolding Energy - sRNA 25.6552 kcal/mol@LB@@LB@Position - mRNA 26 -- 173@LB@Position - sRNA 12 -- 134@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 12 |
0.0004273 |
0.1011 |
bsu13640 |
spo0E |
-21.66 |
0.001221 |
136 -- 180 |
32 -- 78 |
aspartyl-phosphate phosphatase Spo0E |
|
_____________135________________________________________________181\n_____________|__________________________________________________|\n5'-GGC...UAAUC______AAU__________A______A___AAA_________________AGCGG...AUG-3'\n______________UGUAAU____GC__ACAAU___ACCC_AUC___CUUGUUUCCUAUUUCUU\n______________||:|||____||__|||||___||||_|||___|||:||:||:|||||||\n______________ACGUUA____CG__UGUUA___UGGG_UAG___GAAUAAGGGGUAAAGAA\n3'-AUU...AAGCA______GAAC__UU_____GCA________A___________________ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________79_________________________________________________31\n |
172 -- 178 |
34 -- 40 |
-36.2602 kcal/mol |
3.78665 kcal/mol |
13.8985 kcal/mol |
135 181@LB@ | |@LB@5'-GGC...UAAUC AAU A A AAA AGCGG...AUG-3'@LB@ UGUAAU GC ACAAU ACCC AUC CUUGUUUCCUAUUUCUU@LB@ ||:||| || ||||| |||| ||| |||:||:||:|||||||@LB@ ACGUUA CG UGUUA UGGG UAG GAAUAAGGGGUAAAGAA@LB@3'-AUU...AAGCA GAAC UU GCA A ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -36.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.78665 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 136 -- 180@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 4 |
0.0001192 |
0.08823 |
bsu12150 |
yjgB |
-21.60 |
0.001260 |
37 -- 72 |
32 -- 79 |
Evidence 5: No homology to any previously reported sequences; PubMedId: 1580552 |
|
_____________36_______________________________________________73\n_____________|________________________________________________|\n5'-CCU...UGUGA____UU_____C____________________C_______________GCUUU...CAG-3'\n______________UUGU__UCUUG_CAG__________CCAUCUC__AUUCCCC_UUUCUU\n______________|||:__|||||_||:__________|||||||__|||||||_||||||\n______________AACG__AGAAC_GUU__________GGUAGAG__UAAGGGG_AAAGAA\n3'-AUU...GAAGC____UU_____C___UGUUAGCAUG_______AA_______U______ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________80_______________________________________________31\n |
60 -- 66 |
39 -- 45 |
-34.5565 kcal/mol |
2.03428 kcal/mol |
13.9015 kcal/mol |
36 73@LB@ | |@LB@5'-CCU...UGUGA UU C C GCUUU...CAG-3'@LB@ UUGU UCUUG CAG CCAUCUC AUUCCCC UUUCUU@LB@ |||: ||||| ||: ||||||| ||||||| ||||||@LB@ AACG AGAAC GUU GGUAGAG UAAGGGG AAAGAA@LB@3'-AUU...GAAGC UU C UGUUAGCAUG AA U ACUUU...CAA-5'@LB@ | |@LB@ 80 31@LB@@LB@@LB@Energy -21.60 kcal/mol@LB@Hybridization Energy -34.5565 kcal/mol@LB@Unfolding Energy - mRNA 2.03428 kcal/mol@LB@Unfolding Energy - sRNA 13.9015 kcal/mol@LB@@LB@Position - mRNA 37 -- 72@LB@Position - sRNA 32 -- 79@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 16 |
0.0004911 |
0.1011 |
bsu34650 |
yvdC |
-21.31 |
0.001462 |
17 -- 94 |
101 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________16_______________________________________________________________________95\n_____________|________________________________________________________________________|\n5'-AUA...UUUUA___G_______UCCCC_____U______C_________AAUACA____A________U____C__G______CCGCA...AGG-3'\n______________UAC_CUUCAUU_____CAGGG__UUGAU_____CCGCA________CA_AUG__GUU_UCAU_UU_UCAUCU\n______________|||_||||||:_____||||:__||||:_____|||||________||_||:__|||_|||:_||_||||||\n______________AUG_GAAGUAG_____GUCCU__AACUG_____GGCGU________GU_UAU__CAA_AGUG_AA_AGUAGA\n3'-AUU...AAAAA___A_______UU________GU_____UAACA_____CGUUCAAG__A___UA___C____A__G______AGUUU...CAA-5'\n_____________|________________________________________________________________________|\n_____________186______________________________________________________________________100\n |
36 -- 42 |
159 -- 165 |
-36.2616 kcal/mol |
8.0324 kcal/mol |
15.7762 kcal/mol |
16 95@LB@ | |@LB@5'-AUA...UUUUA G UCCCC U C AAUACA A U C G CCGCA...AGG-3'@LB@ UAC CUUCAUU CAGGG UUGAU CCGCA CA AUG GUU UCAU UU UCAUCU@LB@ ||| ||||||: ||||: ||||: ||||| || ||: ||| |||: || ||||||@LB@ AUG GAAGUAG GUCCU AACUG GGCGU GU UAU CAA AGUG AA AGUAGA@LB@3'-AUU...AAAAA A UU GU UAACA CGUUCAAG A UA C A G AGUUU...CAA-5'@LB@ | |@LB@ 186 100@LB@@LB@@LB@Energy -21.31 kcal/mol@LB@Hybridization Energy -36.2616 kcal/mol@LB@Unfolding Energy - mRNA 8.0324 kcal/mol@LB@Unfolding Energy - sRNA 15.7762 kcal/mol@LB@@LB@Position - mRNA 17 -- 94@LB@Position - sRNA 101 -- 185@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 159 -- 165@LB@ |
| 2 |
6.323e-05 |
0.08823 |
bsu13370 |
ykoQ |
-21.23 |
0.001523 |
8 -- 146 |
40 -- 170 |
metallophosphoesterase |
|
_____________7_______________________________________________________________________________________________________________________________________________________147\n_____________|_______________________________________________________________________________________________________________________________________________________|\n____5'-CGUAACA______ACA____C__UUGU___UC____________U_____U_____GCCUC_________AAA_______A__CCUUUUCC__________CAAAU__U__AUCAUAU______C___UUUUCA__________ACCCAUUA______GCUAU...CAA-3'\n______________UUGCUU___CAUC_AU____UAU__UGAC____UCCG_CGGCA_GUUCU_____AUG_UGUCA____UUUAUU_UC______________CUUC_____CA_UC_______GACAAU_CGU______ACCUGUCUCU________AUUCCC\n______________||:||:___||||_|:____:||__||||____||||_|:|||_||||:_____|||_|||||____:|:||:_||______________||||_____||_||_______:|||||_|||______|||::|||||________||||||\n______________AAUGAG___GUAG_UG____GUA__ACUG____AGGC_GUCGU_CAAGG_____UAC_ACAGU____GAGUAG_AG______________GAAG_____GU_AG_______UUGUUA_GCA______UGGGUAGAGA________UAAGGG\n3'-AUU...AAAAA______AA_____U__UCCU_________UAAC__________U_____UAUAU___A_____GAAA______A__UUUCAUUACUUACC____CAAC___U__AACCGU___________________________A_____________GUAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________________________|\n_____________171_____________________________________________________________________________________________________________________________________________________39\n |
126 -- 132 |
47 -- 53 |
-61.8379 kcal/mol |
13.5948 kcal/mol |
30.7766 kcal/mol |
7 147@LB@ | |@LB@ 5'-CGUAACA ACA C UUGU UC U U GCCUC AAA A CCUUUUCC CAAAU U AUCAUAU C UUUUCA ACCCAUUA GCUAU...CAA-3'@LB@ UUGCUU CAUC AU UAU UGAC UCCG CGGCA GUUCU AUG UGUCA UUUAUU UC CUUC CA UC GACAAU CGU ACCUGUCUCU AUUCCC@LB@ ||:||: |||| |: :|| |||| |||| |:||| ||||: ||| ||||| :|:||: || |||| || || :||||| ||| |||::||||| ||||||@LB@ AAUGAG GUAG UG GUA ACUG AGGC GUCGU CAAGG UAC ACAGU GAGUAG AG GAAG GU AG UUGUUA GCA UGGGUAGAGA UAAGGG@LB@3'-AUU...AAAAA AA U UCCU UAAC U UAUAU A GAAA A UUUCAUUACUUACC CAAC U AACCGU A GUAAA...CAA-5'@LB@ | |@LB@ 171 39@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -61.8379 kcal/mol@LB@Unfolding Energy - mRNA 13.5948 kcal/mol@LB@Unfolding Energy - sRNA 30.7766 kcal/mol@LB@@LB@Position - mRNA 8 -- 146@LB@Position - sRNA 40 -- 170@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 10 |
0.0002277 |
0.08823 |
bsu05690 |
ydhB |
-21.23 |
0.001523 |
113 -- 150 |
136 -- 182 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
bsu12400 |
_____________112_______________________________151\n_____________|_________________________________|\n5'-CAU...UGUUU__________________C______ACC_____CAGAA...UCC-3'\n______________UUCUUCGUCAAUAGGACA____CAU___UCCGC\n______________:|||||:||||:||||||____|||___|||||\n______________GAGAAGUAGUUGUCCUGU____GUA___AGGCG\n3'-AUU...AAAAU__________________AACU___AC______UCGUU...CAA-5'\n_____________|_________________________________|\n_____________183_______________________________135\n |
132 -- 138 |
150 -- 156 |
-33.3473 kcal/mol |
6.29637 kcal/mol |
7.50175 kcal/mol |
112 151@LB@ | |@LB@5'-CAU...UGUUU C ACC CAGAA...UCC-3'@LB@ UUCUUCGUCAAUAGGACA CAU UCCGC@LB@ :|||||:||||:|||||| ||| |||||@LB@ GAGAAGUAGUUGUCCUGU GUA AGGCG@LB@3'-AUU...AAAAU AACU AC UCGUU...CAA-5'@LB@ | |@LB@ 183 135@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -33.3473 kcal/mol@LB@Unfolding Energy - mRNA 6.29637 kcal/mol@LB@Unfolding Energy - sRNA 7.50175 kcal/mol@LB@@LB@Position - mRNA 113 -- 150@LB@Position - sRNA 136 -- 182@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 150 -- 156@LB@ |
| 26 |
0.0007049 |
0.1051 |
bsu24750 |
yqhB |
-20.67 |
0.002015 |
266 -- 294 |
134 -- 164 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pm: membrane component' |
|
_____________265_____________________________295\n_____________|_______________________________|\n5'-UUC...CUCAU______________UUUU_____________AAUUUU-3'\n______________UUUGUUAACAGGAU_____CGUUG_CCGUAG\n______________||::|:|||||||:_____|:|||_|||:||\n______________AAGUAGUUGUCCUG_____GUAAC_GGCGUC\n3'-AUU...AUGAG______________UAACU_____A______GUUCA...CAA-5'\n_____________|_______________________________|\n_____________165_____________________________133\n |
273 -- 279 |
151 -- 157 |
-31.5872 kcal/mol |
2.9023 kcal/mol |
8.693 kcal/mol |
265 295@LB@ | |@LB@5'-UUC...CUCAU UUUU AAUUUU-3'@LB@ UUUGUUAACAGGAU CGUUG CCGUAG@LB@ ||::|:|||||||: |:||| |||:||@LB@ AAGUAGUUGUCCUG GUAAC GGCGUC@LB@3'-AUU...AUGAG UAACU A GUUCA...CAA-5'@LB@ | |@LB@ 165 133@LB@@LB@@LB@Energy -20.67 kcal/mol@LB@Hybridization Energy -31.5872 kcal/mol@LB@Unfolding Energy - mRNA 2.9023 kcal/mol@LB@Unfolding Energy - sRNA 8.693 kcal/mol@LB@@LB@Position - mRNA 266 -- 294@LB@Position - sRNA 134 -- 164@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 151 -- 157@LB@ |
