| 91 |
0.00349 |
0.1486 |
bsu28050 |
maf |
-6.37 |
0.874324 |
134 -- 184 |
39 -- 85 |
septum formation protein Maf |
|
_____________133_____185\n_____________|_______|\n5'-GAA...CCCUA_______AUUGU...AAG-3'\n______________CUCCAUU\n______________|:|||||\n______________GGGGUAA\n3'-AUU...AAUAA_______AGAAA...CAA-5'\n_____________|_______|\n_____________86______38\n |
275 -- 281 |
36 -- 42 |
-8.4297 kcal/mol |
0.414575 kcal/mol |
2.55634 kcal/mol |
133 185@LB@ | |@LB@5'-GAA...CCCUA AUUGU...AAG-3'@LB@ CUCCAUU@LB@ |:|||||@LB@ GGGGUAA@LB@3'-AUU...AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 86 38@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -8.4297 kcal/mol@LB@Unfolding Energy - mRNA 0.414575 kcal/mol@LB@Unfolding Energy - sRNA 2.55634 kcal/mol@LB@@LB@Position - mRNA 134 -- 184@LB@Position - sRNA 39 -- 85@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 92 |
0.003598 |
0.1515 |
bsu22200 |
cotD |
-17.29 |
0.010920 |
45 -- 158 |
37 -- 130 |
spore coat protein D |
|
_____________44________________________________________________________________________________________________________________________159\n_____________|_________________________________________________________________________________________________________________________|\n5'-AUU...UACUU_____U___U___GUAUUU___A________GU_________CUU___A__CA_____AA_____CACUUUUAAAAUAG_____U___UCAG_____________________________AACUU...ACC-3'\n______________GUUCU_UGU_GUG______UUG_UUGCUUUU__GUUUUCAAA___UAA_GA___GCUU__UUGCA______________GUCUU_GCA____AACA__UGUACCC____CUUAUUUUUCAU\n______________||||:_|:|_:||______|||_|::||||:__:|:||||||___|||_||___||||__|||||______________:||||_|||____||||__:||||||____||||||:::|||\n______________CAAGG_AUA_UAC______AAC_AGUGAAAG__UAGAAGUUU___AUU_CU___CGAA__AACGU______________UAGAA_CGU____UUGU__GCAUGGG____GAAUAAGGGGUA\n3'-AUU...UCGUU_____U___U_____________________AG_________C_____A__UAC____GC________________________C___________UA_______UAGA____________AAGAA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________|\n_____________131_______________________________________________________________________________________________________________________36\n |
147 -- 153 |
42 -- 48 |
-55.4941 kcal/mol |
20.5826 kcal/mol |
23.6024 kcal/mol |
44 159@LB@ | |@LB@5'-AUU...UACUU U U GUAUUU A GU CUU A CA AA CACUUUUAAAAUAG U UCAG AACUU...ACC-3'@LB@ GUUCU UGU GUG UUG UUGCUUUU GUUUUCAAA UAA GA GCUU UUGCA GUCUU GCA AACA UGUACCC CUUAUUUUUCAU@LB@ ||||: |:| :|| ||| |::||||: :|:|||||| ||| || |||| ||||| :|||| ||| |||| :|||||| ||||||:::|||@LB@ CAAGG AUA UAC AAC AGUGAAAG UAGAAGUUU AUU CU CGAA AACGU UAGAA CGU UUGU GCAUGGG GAAUAAGGGGUA@LB@3'-AUU...UCGUU U U AG C A UAC GC C UA UAGA AAGAA...CAA-5'@LB@ | |@LB@ 131 36@LB@@LB@@LB@Energy -17.29 kcal/mol@LB@Hybridization Energy -55.4941 kcal/mol@LB@Unfolding Energy - mRNA 20.5826 kcal/mol@LB@Unfolding Energy - sRNA 23.6024 kcal/mol@LB@@LB@Position - mRNA 45 -- 158@LB@Position - sRNA 37 -- 130@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 93 |
0.003652 |
0.1515 |
bsu03060 |
lctP |
-13.96 |
0.054584 |
161 -- 227 |
49 -- 115 |
L-lactate permease |
bsu34190 |
_____________160_______________________________________________________________________228\n_____________|_________________________________________________________________________|\n5'-CGG...AAAAA___A___AACCG__A___________AG_______GA____U____G_______________AUG________GGAAA...UGA-3'\n______________GUC_ACU_____CA_CUUUAGAGUAA_____GGCU___UUG_CAAU__UGG_GAGCAGUUGU___AUCCGUUU\n______________|||_|||_____||_|||:|:|||||_____||||___|||_||||__|||_:|:||:|:||___|:||:|:|\n______________CAG_UGA_____GU_GAAGUUUCAUU_____CCGA___AAC_GUUA__ACC_UUUGUUAGCA___UGGGUAGA\n3'-AUU...UACAA_______AAGA___A___________ACUUA____AGC________GA___G_____________________GAAUA...CAA-5'\n_____________|_________________________________________________________________________|\n_____________116_______________________________________________________________________48\n |
220 -- 226 |
50 -- 56 |
-45.5058 kcal/mol |
15.3983 kcal/mol |
19.8755 kcal/mol |
160 228@LB@ | |@LB@5'-CGG...AAAAA A AACCG A AG GA U G AUG GGAAA...UGA-3'@LB@ GUC ACU CA CUUUAGAGUAA GGCU UUG CAAU UGG GAGCAGUUGU AUCCGUUU@LB@ ||| ||| || |||:|:||||| |||| ||| |||| ||| :|:||:|:|| |:||:|:|@LB@ CAG UGA GU GAAGUUUCAUU CCGA AAC GUUA ACC UUUGUUAGCA UGGGUAGA@LB@3'-AUU...UACAA AAGA A ACUUA AGC GA G GAAUA...CAA-5'@LB@ | |@LB@ 116 48@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -45.5058 kcal/mol@LB@Unfolding Energy - mRNA 15.3983 kcal/mol@LB@Unfolding Energy - sRNA 19.8755 kcal/mol@LB@@LB@Position - mRNA 161 -- 227@LB@Position - sRNA 49 -- 115@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 94 |
0.003675 |
0.1515 |
bsu40130 |
yydK |
-17.16 |
0.011624 |
17 -- 47 |
34 -- 60 |
HTH-type transcriptional regulator YydK |
|
_____________16___________________________________48\n_____________|____________________________________|\n__________5'-A_____UUU__U___C_________CUC_________CCCGA...UGG-3'\n______________UGUCU___GC_AGU_UCGUAUAAU____UCACUUUC\n______________||||:___||_|||_:|:||||||____||||||||\n______________ACAGG___CG_UCA_GGUAUAUUA____AGUGAAAG\n3'-AUU...CUGUA_____CGU__U___A_________CAAC________AGUAG...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________33\n |
30 -- 36 |
107 -- 113 |
-26.8798 kcal/mol |
2.26958 kcal/mol |
10.0128 kcal/mol |
16 48@LB@ | |@LB@ 5'-A UUU U C CUC CCCGA...UGG-3'@LB@ UGUCU GC AGU UCGUAUAAU UCACUUUC@LB@ ||||: || ||| :|:|||||| ||||||||@LB@ ACAGG CG UCA GGUAUAUUA AGUGAAAG@LB@3'-AUU...CUGUA CGU U A CAAC AGUAG...CAA-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -17.16 kcal/mol@LB@Hybridization Energy -26.8798 kcal/mol@LB@Unfolding Energy - mRNA 2.26958 kcal/mol@LB@Unfolding Energy - sRNA 10.0128 kcal/mol@LB@@LB@Position - mRNA 17 -- 47@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 95 |
0.003784 |
0.1541 |
bsu12910 |
proG |
-16.76 |
0.014152 |
1 -- 50 |
33 -- 83 |
pyrroline-5-carboxylate reductase 3 |
|
______________1______________________________________________________51\n______________|______________________________________________________|\n___________5'-________U_________UC_____A_U________A_______A_U________CUAUU...UUG-3'\n______________UUCGUU_C_GUUUU__CA__ACGAU_G_UAUCCAUC___UGUUC_C_CCGUUUCU\n______________||||||_|_:|:||__||__||:||_|_||:|||||___|:|||_|_||:|||||\n______________AAGCAA_G_UAGAA__GU__UGUUA_C_AUGGGUAG___AUAAG_G_GGUAAAGA\n3'-AUU...UACCG______C_U_____CC__U______G__________AGA________________AACUU...CAA-5'\n_____________|_______________________________________________________|\n_____________84______________________________________________________32\n |
44 -- 50 |
33 -- 39 |
-32.4348 kcal/mol |
4.82786 kcal/mol |
13.9589 kcal/mol |
1 51@LB@ | |@LB@ 5'- U UC A U A A U CUAUU...UUG-3'@LB@ UUCGUU C GUUUU CA ACGAU G UAUCCAUC UGUUC C CCGUUUCU@LB@ |||||| | :|:|| || ||:|| | ||:||||| |:||| | ||:|||||@LB@ AAGCAA G UAGAA GU UGUUA C AUGGGUAG AUAAG G GGUAAAGA@LB@3'-AUU...UACCG C U CC U G AGA AACUU...CAA-5'@LB@ | |@LB@ 84 32@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -32.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.82786 kcal/mol@LB@Unfolding Energy - sRNA 13.9589 kcal/mol@LB@@LB@Position - mRNA 1 -- 50@LB@Position - sRNA 33 -- 83@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 96 |
0.003858 |
0.1541 |
bsu03700 |
gerKA |
-12.88 |
0.090279 |
45 -- 139 |
38 -- 125 |
spore germination protein KA |
|
_____________44_________________________________________140\n_____________|__________________________________________|\n5'-UUG...CCUCC_____UAG___CU___U________GA____A____G_____AACCC...CGG-3'\n______________GCUUU___UGU__AUC_UUGGCGGA__AGUU_UACC_CAUCU\n______________||||:___||:__|||_|||||::|__|:|:_||||_|||||\n______________CGAAG___ACG__UAG_AACCGUUU__UUAG_AUGG_GUAGA\n3'-AUU...CUUAC_____CA____U_____________G_____C__________GAAUA...CAA-5'\n_____________|__________________________________________|\n_____________126________________________________________37\n |
108 -- 114 |
65 -- 71 |
-29.7431 kcal/mol |
10.7852 kcal/mol |
9.08698 kcal/mol |
44 140@LB@ | |@LB@5'-UUG...CCUCC UAG CU U GA A G AACCC...CGG-3'@LB@ GCUUU UGU AUC UUGGCGGA AGUU UACC CAUCU@LB@ ||||: ||: ||| |||||::| |:|: |||| |||||@LB@ CGAAG ACG UAG AACCGUUU UUAG AUGG GUAGA@LB@3'-AUU...CUUAC CA U G C GAAUA...CAA-5'@LB@ | |@LB@ 126 37@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -29.7431 kcal/mol@LB@Unfolding Energy - mRNA 10.7852 kcal/mol@LB@Unfolding Energy - sRNA 9.08698 kcal/mol@LB@@LB@Position - mRNA 45 -- 139@LB@Position - sRNA 38 -- 125@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 97 |
0.003858 |
0.1541 |
bsu32520 |
pucG |
-15.24 |
0.029596 |
117 -- 232 |
36 -- 162 |
purine catabolism protein PucG |
|
_____________116_____________________________________________________________________________________________________________________________________233\n_____________|_______________________________________________________________________________________________________________________________________|\n5'-UGA...AUAUA_______CA____GC____G__CGGC__________CUGA__GAUUUAUUAUACAA___GG_______GA_____GAG_________GU_________A_______A__GAAU___G__________________AAGAA...CGG-3'\n______________CGUCAGC__GACA__UUGA_AU____GUCCGC_GCA____CU______________ACU__CUUA_CU__UAAAG____GAAUGGCU________GUC__GGCAGA_GA____UAU_CA_________CCCCGUU\n______________|:|||:|__||||__||||_||____||||||_|||____|:______________|||__||:|_||__:||||____||||||||________:||__||||:|_:|____||:_||_________||||:||\n______________GUAGUUG__CUGU__AACU_UA____CAGGCG_CGU____GG______________UGA__GAGU_GA__GUUUC____CUUACCGA________UAG__CCGUUU_UU____AUG_GU_________GGGGUAA\n3'-AUU...GAGAA_______UC__________G__A_________U___UCAA__UAUAUUACAACAG____AA____A__A______AUUA________AGCAACGU___AA______G__AGC____G__AGAGAAUAA_______AGAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________|\n_____________163_____________________________________________________________________________________________________________________________________35\n |
226 -- 232 |
36 -- 42 |
-68.3253 kcal/mol |
25.8271 kcal/mol |
31.2699 kcal/mol |
116 233@LB@ | |@LB@5'-UGA...AUAUA CA GC G CGGC CUGA GAUUUAUUAUACAA GG GA GAG GU A A GAAU G AAGAA...CGG-3'@LB@ CGUCAGC GACA UUGA AU GUCCGC GCA CU ACU CUUA CU UAAAG GAAUGGCU GUC GGCAGA GA UAU CA CCCCGUU@LB@ |:|||:| |||| |||| || |||||| ||| |: ||| ||:| || :|||| |||||||| :|| ||||:| :| ||: || ||||:||@LB@ GUAGUUG CUGU AACU UA CAGGCG CGU GG UGA GAGU GA GUUUC CUUACCGA UAG CCGUUU UU AUG GU GGGGUAA@LB@3'-AUU...GAGAA UC G A U UCAA UAUAUUACAACAG AA A A AUUA AGCAACGU AA G AGC G AGAGAAUAA AGAAA...CAA-5'@LB@ | |@LB@ 163 35@LB@@LB@@LB@Energy -15.24 kcal/mol@LB@Hybridization Energy -68.3253 kcal/mol@LB@Unfolding Energy - mRNA 25.8271 kcal/mol@LB@Unfolding Energy - sRNA 31.2699 kcal/mol@LB@@LB@Position - mRNA 117 -- 232@LB@Position - sRNA 36 -- 162@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 98 |
0.003906 |
0.1544 |
bsu29990 |
pbuO |
-11.33 |
0.180719 |
218 -- 233 |
123 -- 137 |
guanine/hypoxanthine permease PbuO |
|
_____________217______________234\n_____________|________________|\n5'-GGU...AAAGA_______ACA______AAGCA...CGG-3'\n______________GCAGCAA___UCCAUA\n______________|||||||___||||||\n______________CGUCGUU___AGGUAU\n3'-AUU...ACAGG_______CA_______AUUAC...CAA-5'\n_____________|________________|\n_____________138______________122\n |
218 -- 224 |
131 -- 137 |
-16.3971 kcal/mol |
2.46726 kcal/mol |
3.21202 kcal/mol |
217 234@LB@ | |@LB@5'-GGU...AAAGA ACA AAGCA...CGG-3'@LB@ GCAGCAA UCCAUA@LB@ ||||||| ||||||@LB@ CGUCGUU AGGUAU@LB@3'-AUU...ACAGG CA AUUAC...CAA-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -16.3971 kcal/mol@LB@Unfolding Energy - mRNA 2.46726 kcal/mol@LB@Unfolding Energy - sRNA 3.21202 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 99 |
0.004027 |
0.1561 |
bsu13870 |
ykvZ |
-9.91 |
0.324242 |
1 -- 15 |
1 -- 17 |
LacI family transcriptional regulator |
|
______________1________________16\n______________|________________|\n___________5'-__________A______UUUGG...GAA-3'\n______________GUUUAAUUUC___UGUU\n______________|:||||||||___||||\n______________CGAAUUAAAG___ACAA\n3'-AUU...UUUUG__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
4 -- 10 |
8 -- 14 |
-10.8546 kcal/mol |
0.387335 kcal/mol |
1.29438 kcal/mol |
1 16@LB@ | |@LB@ 5'- A UUUGG...GAA-3'@LB@ GUUUAAUUUC UGUU@LB@ |:|||||||| ||||@LB@ CGAAUUAAAG ACAA@LB@3'-AUU...UUUUG AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -10.8546 kcal/mol@LB@Unfolding Energy - mRNA 0.387335 kcal/mol@LB@Unfolding Energy - sRNA 1.29438 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 100 |
0.004029 |
0.1561 |
bsu32980 |
yusZ |
-14.16 |
0.049671 |
3 -- 55 |
39 -- 90 |
oxidoreductase |
|
_____________2______________________________________56\n_____________|______________________________________|\n5'-CCG...GUCAU_____GUU_______GU____AUAG_____________AAUAG...CAA-3'\n______________UUCGU___CAGGAUA___ACA____CUGUAGCA_GUUU\n______________|||:|___|||||:|___|||____|:|:||||_|||:\n______________AAGUA___GUCCUGU___UGU____GGCGUCGU_CAAG\n3'-AUU...AUGAG_____GUU_______AAC___AACA________U____GUAUA...CAA-5'\n_____________|______________________________________|\n_____________91_____________________________________38\n |
175 -- 181 |
132 -- 138 |
-30.394 kcal/mol |
8.27302 kcal/mol |
10.1352 kcal/mol |
2 56@LB@ | |@LB@5'-CCG...GUCAU GUU GU AUAG AAUAG...CAA-3'@LB@ UUCGU CAGGAUA ACA CUGUAGCA GUUU@LB@ |||:| |||||:| ||| |:|:|||| |||:@LB@ AAGUA GUCCUGU UGU GGCGUCGU CAAG@LB@3'-AUU...AUGAG GUU AAC AACA U GUAUA...CAA-5'@LB@ | |@LB@ 91 38@LB@@LB@@LB@Energy -14.16 kcal/mol@LB@Hybridization Energy -30.394 kcal/mol@LB@Unfolding Energy - mRNA 8.27302 kcal/mol@LB@Unfolding Energy - sRNA 10.1352 kcal/mol@LB@@LB@Position - mRNA 3 -- 55@LB@Position - sRNA 39 -- 90@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 132 -- 138@LB@ |
