| 31 |
0.0008564 |
0.1059 |
bsu10290 |
yhfN |
-10.46 |
0.260955 |
32 -- 88 |
131 -- 186 |
metalloprotease YhfN |
|
_____________31__________________89\n_____________|___________________|\n5'-AUG...GCAAG__________G________ACUUG...AAG-3'\n______________UGG_AUUG_C_GCAGCAGG\n______________||:_||||_|_||||||:|\n______________ACU_UAAC_G_CGUCGUUC\n3'-AUU...CUGUA___G____A_G________AAGGU...CAA-5'\n_____________|___________________|\n_____________187_________________130\n |
220 -- 226 |
130 -- 136 |
-18.5522 kcal/mol |
5.78917 kcal/mol |
6.22375 kcal/mol |
31 89@LB@ | |@LB@5'-AUG...GCAAG G ACUUG...AAG-3'@LB@ UGG AUUG C GCAGCAGG@LB@ ||: |||| | ||||||:|@LB@ ACU UAAC G CGUCGUUC@LB@3'-AUU...CUGUA G A G AAGGU...CAA-5'@LB@ | |@LB@ 187 130@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.5522 kcal/mol@LB@Unfolding Energy - mRNA 5.78917 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 32 -- 88@LB@Position - sRNA 131 -- 186@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 32 |
0.0008744 |
0.1059 |
bsu09430 |
citR |
-15.39 |
0.027619 |
23 -- 103 |
39 -- 111 |
LysR family transcriptional regulator |
|
_____________22______________________________________________________________________________________104\n_____________|_______________________________________________________________________________________|\n5'-UGU...ACGCC________C_A____UAU__C______________UACACA_______CCCUU________CGUAAU__________G_________CUAUC...CCG-3'\n______________CUUUUUCA_C_UCAA___GG_UGAUGGAU_GUUUC______UGUAAUU________UAAUC______GUA_CCAUUU__UAUUCCCC\n______________||||:|||_|_||||___:|_|:|||:||_|:|||______||:|||:________:||||______|||_||||:|__||||||||\n______________GAAAGAGU_G_AGUU___UC_AUUACUUA_CGAAG______ACGUUAG________GUUAG______CAU_GGUAGA__AUAAGGGG\n3'-AUU...ACAGU________A_A__________________C_____CA___________AACCGUUU______________G______GA________UAAAG...CAA-5'\n_____________|_______________________________________________________________________________________|\n_____________112_____________________________________________________________________________________38\n |
97 -- 103 |
39 -- 45 |
-43.1846 kcal/mol |
11.0009 kcal/mol |
20.821 kcal/mol |
22 104@LB@ | |@LB@5'-UGU...ACGCC C A UAU C UACACA CCCUU CGUAAU G CUAUC...CCG-3'@LB@ CUUUUUCA C UCAA GG UGAUGGAU GUUUC UGUAAUU UAAUC GUA CCAUUU UAUUCCCC@LB@ ||||:||| | |||| :| |:|||:|| |:||| ||:|||: :|||| ||| ||||:| ||||||||@LB@ GAAAGAGU G AGUU UC AUUACUUA CGAAG ACGUUAG GUUAG CAU GGUAGA AUAAGGGG@LB@3'-AUU...ACAGU A A C CA AACCGUUU G GA UAAAG...CAA-5'@LB@ | |@LB@ 112 38@LB@@LB@@LB@Energy -15.39 kcal/mol@LB@Hybridization Energy -43.1846 kcal/mol@LB@Unfolding Energy - mRNA 11.0009 kcal/mol@LB@Unfolding Energy - sRNA 20.821 kcal/mol@LB@@LB@Position - mRNA 23 -- 103@LB@Position - sRNA 39 -- 111@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 33 |
0.0009705 |
0.114 |
bsu20780 |
yopS |
-12.53 |
0.106187 |
15 -- 36 |
34 -- 54 |
XRE family transcriptional regulator |
|
_____________14_______________37\n_____________|________________|\n5'-GUU...ACCUG________C_______UAUGU...AAC-3'\n______________CCAUC_CU_AUUCUCC\n______________|||||_||_||||:||\n______________GGUAG_GA_UAAGGGG\n3'-AUU...GCAUG_____A__A_______UAAAG...CAA-5'\n_____________|________________|\n_____________55_______________33\n |
23 -- 29 |
39 -- 45 |
-17.4753 kcal/mol |
0.463886 kcal/mol |
7.9005 kcal/mol |
14 37@LB@ | |@LB@5'-GUU...ACCUG C UAUGU...AAC-3'@LB@ CCAUC CU AUUCUCC@LB@ ||||| || ||||:||@LB@ GGUAG GA UAAGGGG@LB@3'-AUU...GCAUG A A UAAAG...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -17.4753 kcal/mol@LB@Unfolding Energy - mRNA 0.463886 kcal/mol@LB@Unfolding Energy - sRNA 7.9005 kcal/mol@LB@@LB@Position - mRNA 15 -- 36@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 34 |
0.001006 |
0.1147 |
bsu37620 |
rsfA |
-13.01 |
0.085239 |
64 -- 106 |
124 -- 165 |
prespore-specific transcriptional regulator RsfA |
|
_____________63_________________________________________________107\n_____________|__________________________________________________|\n5'-UUC...ACAUC__A_______UU__A_____UC_____________U_____CCGC_____CCUUC...ACG-3'\n______________AC_CUUCAUU__AC_AGGAU___GAC__UGUUC_C_GCAAG____UCCAU\n______________||_||||||:__||_||||:___|||__|||:|_|_|||||____|||||\n______________UG_GAAGUAG__UG_UCCUG___CUG__ACAGG_G_CGUUC____AGGUA\n3'-AUU...AAAAA__A_______U_________UAA___UA_____C_U_____A________UAUUA...CAA-5'\n_____________|__________________________________________________|\n_____________166________________________________________________123\n |
64 -- 70 |
159 -- 165 |
-31.4528 kcal/mol |
7.34844 kcal/mol |
10.3728 kcal/mol |
63 107@LB@ | |@LB@5'-UUC...ACAUC A UU A UC U CCGC CCUUC...ACG-3'@LB@ AC CUUCAUU AC AGGAU GAC UGUUC C GCAAG UCCAU@LB@ || ||||||: || ||||: ||| |||:| | ||||| |||||@LB@ UG GAAGUAG UG UCCUG CUG ACAGG G CGUUC AGGUA@LB@3'-AUU...AAAAA A U UAA UA C U A UAUUA...CAA-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -31.4528 kcal/mol@LB@Unfolding Energy - mRNA 7.34844 kcal/mol@LB@Unfolding Energy - sRNA 10.3728 kcal/mol@LB@@LB@Position - mRNA 64 -- 106@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 159 -- 165@LB@ |
| 35 |
0.001083 |
0.1199 |
bsu38140 |
qoxD |
-14.68 |
0.038800 |
80 -- 211 |
61 -- 193 |
quinol oxidase subunit 4 |
|
_____________79_________________212\n_____________|__________________|\n5'-UUU...GGGUC_____AA___________AUCUG...CAG-3'\n______________UGUAA___UGGCAAACAA\n______________||:||___||||||||||\n______________ACGUU___ACCGUUUGUU\n3'-AUU...AAGCA_____AGA__________AGCAU...CAA-5'\n_____________|__________________|\n_____________194________________60\n |
204 -- 210 |
62 -- 68 |
-16.9019 kcal/mol |
4.29892 kcal/mol |
4.69882 kcal/mol |
79 212@LB@ | |@LB@5'-UUU...GGGUC AA AUCUG...CAG-3'@LB@ UGUAA UGGCAAACAA@LB@ ||:|| ||||||||||@LB@ ACGUU ACCGUUUGUU@LB@3'-AUU...AAGCA AGA AGCAU...CAA-5'@LB@ | |@LB@ 194 60@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -16.9019 kcal/mol@LB@Unfolding Energy - mRNA 4.29892 kcal/mol@LB@Unfolding Energy - sRNA 4.69882 kcal/mol@LB@@LB@Position - mRNA 80 -- 211@LB@Position - sRNA 61 -- 193@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 36 |
0.001118 |
0.1204 |
bsu17650 |
yncE |
-8.56 |
0.524973 |
291 -- 300 |
61 -- 70 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________290_______300\n_____________|_________|\n5'-GUA...AUAGG__________-3'\n______________UGGCAAACGA\n______________||||||||:|\n______________ACCGUUUGUU\n3'-AUU...UUAGA__________AGCAU...CAA-5'\n_____________|__________|\n_____________71_________60\n |
294 -- 300 |
61 -- 67 |
-13.5985 kcal/mol |
0.387687 kcal/mol |
4.67716 kcal/mol |
290 300@LB@ | |@LB@5'-GUA...AUAGG -3'@LB@ UGGCAAACGA@LB@ ||||||||:|@LB@ ACCGUUUGUU@LB@3'-AUU...UUAGA AGCAU...CAA-5'@LB@ | |@LB@ 71 60@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -13.5985 kcal/mol@LB@Unfolding Energy - mRNA 0.387687 kcal/mol@LB@Unfolding Energy - sRNA 4.67716 kcal/mol@LB@@LB@Position - mRNA 291 -- 300@LB@Position - sRNA 61 -- 70@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 37 |
0.00122 |
0.1206 |
bsu31150 |
yubB |
-14.80 |
0.036692 |
271 -- 292 |
145 -- 165 |
undecaprenyl-diphosphatase |
|
_____________270____________________293\n_____________|______________________|\n5'-UAU...GCCGG____U____________A____CAUAGUAG-3'\n______________UUUC_UCGACAGGACAU_UGAU\n______________:|||_||:|||||||||_|||:\n______________GAAG_AGUUGUCCUGUA_ACUG\n3'-AUU...AAUGA____U_________________UAACA...CAA-5'\n_____________|______________________|\n_____________166____________________144\n |
281 -- 287 |
149 -- 155 |
-24.6442 kcal/mol |
4.4819 kcal/mol |
7.11846 kcal/mol |
270 293@LB@ | |@LB@5'-UAU...GCCGG U A CAUAGUAG-3'@LB@ UUUC UCGACAGGACAU UGAU@LB@ :||| ||:||||||||| |||:@LB@ GAAG AGUUGUCCUGUA ACUG@LB@3'-AUU...AAUGA U UAACA...CAA-5'@LB@ | |@LB@ 166 144@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -24.6442 kcal/mol@LB@Unfolding Energy - mRNA 4.4819 kcal/mol@LB@Unfolding Energy - sRNA 7.11846 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 145 -- 165@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 38 |
0.001252 |
0.1206 |
bsu19610 |
yodI |
-17.13 |
0.011794 |
8 -- 27 |
49 -- 68 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________7____________________28\n_____________|____________________|\n____5'-AUUUAUC___________AU_______AUUAC...UAA-3'\n______________GCAAACGAUUG__CCCAUCU\n______________||||||:||:|__|||||||\n______________CGUUUGUUAGC__GGGUAGA\n3'-AUU...AGAAC___________AU_______GAAUA...CAA-5'\n_____________|____________________|\n_____________69___________________48\n |
21 -- 27 |
49 -- 55 |
-26.3851 kcal/mol |
1.36402 kcal/mol |
8.38306 kcal/mol |
7 28@LB@ | |@LB@ 5'-AUUUAUC AU AUUAC...UAA-3'@LB@ GCAAACGAUUG CCCAUCU@LB@ ||||||:||:| |||||||@LB@ CGUUUGUUAGC GGGUAGA@LB@3'-AUU...AGAAC AU GAAUA...CAA-5'@LB@ | |@LB@ 69 48@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -26.3851 kcal/mol@LB@Unfolding Energy - mRNA 1.36402 kcal/mol@LB@Unfolding Energy - sRNA 8.38306 kcal/mol@LB@@LB@Position - mRNA 8 -- 27@LB@Position - sRNA 49 -- 68@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 39 |
0.001272 |
0.1206 |
bsu38090 |
vpr |
-13.65 |
0.063330 |
246 -- 286 |
133 -- 174 |
minor extracellular protease vpr |
|
_____________245__________________________________________287\n_____________|____________________________________________|\n5'-AUU...CUUAU_______G_______C__________ACG______CAG______UCCGG...CAA-3'\n______________UUUUUGC___UUAUC_ACAGG_CAUU___GGCGUU____GCAGC\n______________|||||:|___|:|||_|||||_||||___|:|:||____|||||\n______________AAAAAUG___AGUAG_UGUCC_GUAA___CUGUAA____CGUCG\n3'-AUU...CGAAA_______AGA_____U_____U_____________CAGG_____UUCAA...CAA-5'\n_____________|____________________________________________|\n_____________175__________________________________________132\n |
247 -- 253 |
167 -- 173 |
-30.59 kcal/mol |
9.01512 kcal/mol |
10.7895 kcal/mol |
245 287@LB@ | |@LB@5'-AUU...CUUAU G C ACG CAG UCCGG...CAA-3'@LB@ UUUUUGC UUAUC ACAGG CAUU GGCGUU GCAGC@LB@ |||||:| |:||| ||||| |||| |:|:|| |||||@LB@ AAAAAUG AGUAG UGUCC GUAA CUGUAA CGUCG@LB@3'-AUU...CGAAA AGA U U CAGG UUCAA...CAA-5'@LB@ | |@LB@ 175 132@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -30.59 kcal/mol@LB@Unfolding Energy - mRNA 9.01512 kcal/mol@LB@Unfolding Energy - sRNA 10.7895 kcal/mol@LB@@LB@Position - mRNA 246 -- 286@LB@Position - sRNA 133 -- 174@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 40 |
0.001293 |
0.1206 |
bsu13810 |
ykvS |
-11.02 |
0.206841 |
41 -- 57 |
31 -- 45 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________40________________58\n_____________|_________________|\n5'-UGU...CAAAA_______CCU_______CUAUU...CGA-3'\n______________AUUCCCC___UUUCUUU\n______________|||||||___|||||||\n______________UAAGGGG___AAAGAAA\n3'-AUU...GAGAA_______U_________CUUUA...CAA-5'\n_____________|_________________|\n_____________46________________30\n |
51 -- 57 |
31 -- 37 |
-15.5048 kcal/mol |
1.25691 kcal/mol |
5.1304 kcal/mol |
40 58@LB@ | |@LB@5'-UGU...CAAAA CCU CUAUU...CGA-3'@LB@ AUUCCCC UUUCUUU@LB@ ||||||| |||||||@LB@ UAAGGGG AAAGAAA@LB@3'-AUU...GAGAA U CUUUA...CAA-5'@LB@ | |@LB@ 46 30@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -15.5048 kcal/mol@LB@Unfolding Energy - mRNA 1.25691 kcal/mol@LB@Unfolding Energy - sRNA 5.1304 kcal/mol@LB@@LB@Position - mRNA 41 -- 57@LB@Position - sRNA 31 -- 45@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 31 -- 37@LB@ |
