| 25 |
0.002073 |
0.2692 |
b3163 |
nlpI |
-16.34 |
0.016289 |
1 -- 45 |
38 -- 89 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
______________1____________________________________________________46\n______________|____________________________________________________|\n___________5'-______________U___A__AUUAAA_____________C_________C__AACCU...CAU-3'\n______________AGGGCC_GUAUCCG_CUG_GC____________GAAGCGA__UGAGCAGU_UC\n______________|::|||_|:|:|||_|||_||____________|||||:|__||||||:|_||\n______________UUUCGG_CGUGGGC_GAC_CG____________CUUCGUU__ACUCGUUA_AG\n__________3'-U______U_______C______AUUCAUUAUGAC_______AC________C__CACGA...GCG-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________37\n |
36 -- 42 |
41 -- 47 |
-40.4977 kcal/mol |
9.24688 kcal/mol |
14.9106 kcal/mol |
1 46@LB@ | |@LB@ 5'- U A AUUAAA C C AACCU...CAU-3'@LB@ AGGGCC GUAUCCG CUG GC GAAGCGA UGAGCAGU UC@LB@ |::||| |:|:||| ||| || |||||:| ||||||:| ||@LB@ UUUCGG CGUGGGC GAC CG CUUCGUU ACUCGUUA AG@LB@ 3'-U U C AUUCAUUAUGAC AC C CACGA...GCG-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -40.4977 kcal/mol@LB@Unfolding Energy - mRNA 9.24688 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 1 -- 45@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 47 |
0.004313 |
0.2905 |
b3739 |
atpI |
-14.34 |
0.035947 |
179 -- 205 |
38 -- 58 |
ATP synthase membrane-bound accessory factor |
|
_____________178_________________________206\n_____________|___________________________|\n5'-GAA...UCGAA________GA____AAAAC________UGUGU...ACC-3'\n______________GGGAGCAG__GUGA_____GUGAUGUC\n______________||:||||:__||||_____|::|||||\n______________CCUUCGUU__CACU_____CGUUACAG\n3'-UUU...UAUGA________A__________________CACGA...GCG-5'\n_____________|___________________________|\n_____________59__________________________37\n |
199 -- 205 |
38 -- 44 |
-24.0387 kcal/mol |
6.48162 kcal/mol |
3.21639 kcal/mol |
178 206@LB@ | |@LB@5'-GAA...UCGAA GA AAAAC UGUGU...ACC-3'@LB@ GGGAGCAG GUGA GUGAUGUC@LB@ ||:||||: |||| |::|||||@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.0387 kcal/mol@LB@Unfolding Energy - mRNA 6.48162 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 56 |
0.005166 |
0.2905 |
b0152 |
fhuD |
-11.53 |
0.106927 |
159 -- 195 |
38 -- 86 |
iron(3+)-hydroxamate import ABC transporter periplasmic binding protein |
|
_____________158________________________________________________196\n_____________|__________________________________________________|\n5'-ACG...AUUUU_____________G___GCU_______________CC_______UU____UAUUG...UUG-3'\n______________GCC_GCAUCCGGC_GGU_______________GCA__UGUGAGU__UGUU\n______________|||_|||:|||||_||:_______________|||__||||||:__|||:\n______________CGG_CGUGGGCCG_CCG_______________CGU__ACACUCG__ACAG\n_______3'-UUUU___U_________A___AUUCAUUAUGACCUU___U________UU____CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________87_________________________________________________37\n |
183 -- 189 |
44 -- 50 |
-42.47 kcal/mol |
16.0325 kcal/mol |
14.9106 kcal/mol |
158 196@LB@ | |@LB@5'-ACG...AUUUU G GCU CC UU UAUUG...UUG-3'@LB@ GCC GCAUCCGGC GGU GCA UGUGAGU UGUU@LB@ ||| |||:||||| ||: ||| ||||||: |||:@LB@ CGG CGUGGGCCG CCG CGU ACACUCG ACAG@LB@ 3'-UUUU U A AUUCAUUAUGACCUU U UU CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -42.47 kcal/mol@LB@Unfolding Energy - mRNA 16.0325 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 159 -- 195@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 69 |
0.006014 |
0.2917 |
b3416 |
malQ |
-15.44 |
0.023264 |
163 -- 216 |
38 -- 88 |
4-alpha-glucanotransferase (amylomaltase) |
|
_____________162_____________________________________________________217\n_____________|_______________________________________________________|\n5'-GCG...UUAUC_____C_________A___AAAACGCUAA_______UC____GAA_____AC___UGGAU...CCA-3'\n______________AGGCU_GUAUCUGGC_GGC___________GGAAGC__GAUG___AGCAA__GUC\n______________|:||:_|:|:|:|||_|||___________||||||__:|||___|||||__|||\n______________UUCGG_CGUGGGCCG_CCG___________CCUUCG__UUAC___UCGUU__CAG\n_________3'-UU_____U_________A___AUUCAUUAUGA____________AC______A____CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________37\n |
171 -- 177 |
74 -- 80 |
-43.8565 kcal/mol |
13.5036 kcal/mol |
14.9106 kcal/mol |
162 217@LB@ | |@LB@5'-GCG...UUAUC C A AAAACGCUAA UC GAA AC UGGAU...CCA-3'@LB@ AGGCU GUAUCUGGC GGC GGAAGC GAUG AGCAA GUC@LB@ |:||: |:|:|:||| ||| |||||| :||| ||||| |||@LB@ UUCGG CGUGGGCCG CCG CCUUCG UUAC UCGUU CAG@LB@ 3'-UU U A AUUCAUUAUGA AC A CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -43.8565 kcal/mol@LB@Unfolding Energy - mRNA 13.5036 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 163 -- 216@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 81 |
0.008086 |
0.3318 |
b3114 |
tdcE |
-10.99 |
0.130865 |
237 -- 290 |
38 -- 86 |
pyruvate formate-lyase 4/2-ketobutyrate formate-lyase |
|
_____________236_____________________________________________________291\n_____________|_______________________________________________________|\n5'-AGA...UGUAC____A___A____U_____UUAA_____CGG_______AAACGAAAU________CGCGA...UUA-3'\n______________GCCG_CGC_UGGC_UGGCU____AGGUA___ACUGGAA__________UAAUGUC\n______________|||:_|:|_:|||_|||||____|:|||___|||||||__________:||||||\n______________CGGU_GUG_GCCG_ACCGA____UUCAU___UGACCUU__________GUUACAG\n_______3'-UUUU____C___G___________________UA________CGUUACACUC_______CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________87______________________________________________________37\n |
284 -- 290 |
38 -- 44 |
-39.8415 kcal/mol |
13.9412 kcal/mol |
14.9106 kcal/mol |
236 291@LB@ | |@LB@5'-AGA...UGUAC A A U UUAA CGG AAACGAAAU CGCGA...UUA-3'@LB@ GCCG CGC UGGC UGGCU AGGUA ACUGGAA UAAUGUC@LB@ |||: |:| :||| ||||| |:||| ||||||| :||||||@LB@ CGGU GUG GCCG ACCGA UUCAU UGACCUU GUUACAG@LB@ 3'-UUUU C G UA CGUUACACUC CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -39.8415 kcal/mol@LB@Unfolding Energy - mRNA 13.9412 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 237 -- 290@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 93 |
0.009691 |
0.3393 |
b2959 |
yggL |
-10.23 |
0.172987 |
12 -- 59 |
38 -- 83 |
DUF469 family protein |
|
_____________11_________________________________________________60\n_____________|__________________________________________________|\n5'-GUA...CAUAU___GA___A____GAACCUU____________U___CU__A_________UUCUA...CAU-3'\n______________GGC__CCG_CUGG_______AUGC_GGAA_CA_AUG__UG_AGUGAUGUC\n______________:||__|||_||||_______||:|_||||_||_|||__||_||::|||||\n______________UCG__GGC_GACC_______UAUG_CCUU_GU_UAC__AC_UCGUUACAG\n____3'-UUUUCGG___UG___C____GAUUCAU____A____C____________________CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________37\n |
53 -- 59 |
38 -- 44 |
-35.0381 kcal/mol |
9.91615 kcal/mol |
14.8888 kcal/mol |
11 60@LB@ | |@LB@5'-GUA...CAUAU GA A GAACCUU U CU A UUCUA...CAU-3'@LB@ GGC CCG CUGG AUGC GGAA CA AUG UG AGUGAUGUC@LB@ :|| ||| |||| ||:| |||| || ||| || ||::|||||@LB@ UCG GGC GACC UAUG CCUU GU UAC AC UCGUUACAG@LB@ 3'-UUUUCGG UG C GAUUCAU A C CACGA...GCG-5'@LB@ | |@LB@ 84 37@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -35.0381 kcal/mol@LB@Unfolding Energy - mRNA 9.91615 kcal/mol@LB@Unfolding Energy - sRNA 14.8888 kcal/mol@LB@@LB@Position - mRNA 12 -- 59@LB@Position - sRNA 38 -- 83@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 99 |
0.01025 |
0.3393 |
b1887 |
cheW |
-9.13 |
0.255901 |
16 -- 66 |
38 -- 87 |
purine-binding chemotaxis protein |
|
_____________15___________________________________________________67\n_____________|____________________________________________________|\n5'-GUG...UAAUU_____A____A___UG_______AAACC____A______CUAUC____A___CCCGG...UCC-3'\n______________GGUCA_CACC_GGU__UGGUUAA______UUG_AAGUAA_____GCAA_GUC\n______________:|:||_||||_||:__|||:|||______:||_|||:||_____||||_|||\n______________UCGGU_GUGG_CCG__ACCGAUU______GAC_UUCGUU_____CGUU_CAG\n________3'-UUU_____C____G____________CAUUAU___C______ACACU____A___CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________88___________________________________________________37\n |
32 -- 38 |
67 -- 73 |
-34.6295 kcal/mol |
10.5892 kcal/mol |
14.9106 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...UAAUU A A UG AAACC A CUAUC A CCCGG...UCC-3'@LB@ GGUCA CACC GGU UGGUUAA UUG AAGUAA GCAA GUC@LB@ :|:|| |||| ||: |||:||| :|| |||:|| |||| |||@LB@ UCGGU GUGG CCG ACCGAUU GAC UUCGUU CGUU CAG@LB@ 3'-UUU C G CAUUAU C ACACU A CACGA...GCG-5'@LB@ | |@LB@ 88 37@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -34.6295 kcal/mol@LB@Unfolding Energy - mRNA 10.5892 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 38 -- 87@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 118 |
0.01263 |
0.3585 |
b0890 |
ftsK |
-8.12 |
0.357469 |
20 -- 46 |
38 -- 59 |
DNA translocase at septal ring sorting daughter chromsomes |
|
_____________19__________________________47\n_____________|___________________________|\n5'-ACA...UGUUA______AAGU___GCA_______C___UGGUU...UUG-3'\n______________UGGAAG____CAA___GAGUAAU_GUC\n______________||||||____|||___|||:|||_|||\n______________ACCUUC____GUU___CUCGUUA_CAG\n3'-UUU...UUAUG_____________ACA___________CACGA...GCG-5'\n_____________|___________________________|\n_____________60__________________________37\n |
36 -- 42 |
41 -- 47 |
-18.6025 kcal/mol |
7.19996 kcal/mol |
3.27871 kcal/mol |
19 47@LB@ | |@LB@5'-ACA...UGUUA AAGU GCA C UGGUU...UUG-3'@LB@ UGGAAG CAA GAGUAAU GUC@LB@ |||||| ||| |||:||| |||@LB@ ACCUUC GUU CUCGUUA CAG@LB@3'-UUU...UUAUG ACA CACGA...GCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 7.19996 kcal/mol@LB@Unfolding Energy - sRNA 3.27871 kcal/mol@LB@@LB@Position - mRNA 20 -- 46@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 126 |
0.01361 |
0.3627 |
b2135 |
yohC |
-14.18 |
0.038247 |
192 -- 212 |
38 -- 58 |
Yip1 family inner membrane protein |
|
_____________191___________________213\n_____________|_____________________|\n5'-CAU...AACAA_________A_____C_____UGGGG...UUU-3'\n______________GGGGGCGGU_UGAGC_AUGUC\n______________||::||::|_|||||_|||||\n______________CCUUCGUUA_ACUCG_UACAG\n3'-UUU...UAUGA_________C_____U_____CACGA...GCG-5'\n_____________|_____________________|\n_____________59____________________37\n |
192 -- 198 |
52 -- 58 |
-26.6444 kcal/mol |
9.24504 kcal/mol |
3.21639 kcal/mol |
191 213@LB@ | |@LB@5'-CAU...AACAA A C UGGGG...UUU-3'@LB@ GGGGGCGGU UGAGC AUGUC@LB@ ||::||::| ||||| |||||@LB@ CCUUCGUUA ACUCG UACAG@LB@3'-UUU...UAUGA C U CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.18 kcal/mol@LB@Hybridization Energy -26.6444 kcal/mol@LB@Unfolding Energy - mRNA 9.24504 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 128 |
0.01397 |
0.3627 |
b1656 |
sodB |
-9.64 |
0.214388 |
197 -- 205 |
38 -- 46 |
superoxide dismutase Fe |
|
_____________196_______206\n_____________|_________|\n5'-UCU...AGAGU_________AUUCG...AGA-3'\n______________AGCAAUGUC\n______________|||||||||\n______________UCGUUACAG\n3'-UUU...UACAC_________CACGA...GCG-5'\n_____________|_________|\n_____________47________37\n |
199 -- 205 |
38 -- 44 |
-13.5738 kcal/mol |
2.78264 kcal/mol |
1.15511 kcal/mol |
196 206@LB@ | |@LB@5'-UCU...AGAGU AUUCG...AGA-3'@LB@ AGCAAUGUC@LB@ |||||||||@LB@ UCGUUACAG@LB@3'-UUU...UACAC CACGA...GCG-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -13.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.78264 kcal/mol@LB@Unfolding Energy - sRNA 1.15511 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
