| 46 |
0.004112 |
0.2905 |
b3263 |
yhdU |
-13.66 |
0.046979 |
167 -- 251 |
6 -- 86 |
putative membrane protein |
|
_____________166______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-GAU...UUCCU______________AAACAUGCACA____C________AUUC_C_____U__GU___________C_______CUG____________________UUUGA...CAG-3'\n______________GCCAG_ACUUGGUU___________GGCU_AGGUAAUG____G_AAGUA_UG__GGC____UCGU_GUUUUCG___UCUUCGU______UUUUCUG\n______________|||||_||::||:|___________||||_|:|||||:____|_|||:|_||__:||____||||_|:||||:___|||:||:______:||:|||\n______________CGGUC_UGGGCCGA___________CCGA_UUCAUUAU____C_UUCGU_AC__UCG____AGCA_CGAAAGU___AGAGGCG______GAAGGAC\n_______3'-UUUU_____G________________________________GAC________U__AC___UUAC____________CCA_______CUCCCA_______UAGCG-5'\n_____________|________________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________________5\n |
245 -- 251 |
6 -- 12 |
-59.7696 kcal/mol |
20.3812 kcal/mol |
25.7297 kcal/mol |
166 252@LB@ | |@LB@5'-GAU...UUCCU AAACAUGCACA C AUUC C U GU C CUG UUUGA...CAG-3'@LB@ GCCAG ACUUGGUU GGCU AGGUAAUG G AAGUA UG GGC UCGU GUUUUCG UCUUCGU UUUUCUG@LB@ ||||| ||::||:| |||| |:|||||: | |||:| || :|| |||| |:||||: |||:||: :||:|||@LB@ CGGUC UGGGCCGA CCGA UUCAUUAU C UUCGU AC UCG AGCA CGAAAGU AGAGGCG GAAGGAC@LB@ 3'-UUUU G GAC U AC UUAC CCA CUCCCA UAGCG-5'@LB@ | |@LB@ 87 5@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -59.7696 kcal/mol@LB@Unfolding Energy - mRNA 20.3812 kcal/mol@LB@Unfolding Energy - sRNA 25.7297 kcal/mol@LB@@LB@Position - mRNA 167 -- 251@LB@Position - sRNA 6 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 54 |
0.00511 |
0.2905 |
b0487 |
cueR |
-8.71 |
0.294876 |
81 -- 102 |
6 -- 25 |
copper-responsive regulon transcriptional regulator |
|
_____________80_____________________103\n_____________|______________________|\n5'-GUU...ACAUC________C_CA__A_______UAUUA...AAA-3'\n______________UCUCUGUG_G__GU_CUUCCUG\n______________||||:|:|_|__||_|||||||\n______________AGAGGCGC_C__CA_GAAGGAC\n3'-UUU...GUCCA________U_C___________UAGCG-5'\n_____________|______________________|\n_____________26_____________________5\n |
96 -- 102 |
6 -- 12 |
-22.4921 kcal/mol |
6.07455 kcal/mol |
7.70509 kcal/mol |
80 103@LB@ | |@LB@5'-GUU...ACAUC C CA A UAUUA...AAA-3'@LB@ UCUCUGUG G GU CUUCCUG@LB@ ||||:|:| | || |||||||@LB@ AGAGGCGC C CA GAAGGAC@LB@3'-UUU...GUCCA U C UAGCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -22.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.07455 kcal/mol@LB@Unfolding Energy - sRNA 7.70509 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 167 |
0.02069 |
0.4072 |
b2897 |
sdhE |
-17.17 |
0.011699 |
7 -- 68 |
8 -- 56 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________6_______________________________________________________________69\n_____________|_______________________________________________________________|\n_____5'-GUAAAA____U___A________CAA_________CUACGCGAUCUGUGCC__________C_A_____AAAAA...ACA-3'\n______________GAGC_AUG__GGCAAUG___GUGCUUUCA________________UUCUGCGAGG_G_CUUCC\n______________:|||_|||__:||||||___|||||||||________________:||:||||||_|_|||||\n______________UUCG_UAC__UCGUUAC___CACGAAAGU________________GAGGCGCUCC_C_GAAGG\n3'-UUU...UGACC____U___AC_______AG__________CCAA________________________A_____ACUAGCG-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________7\n |
54 -- 60 |
15 -- 21 |
-49.3967 kcal/mol |
18.1865 kcal/mol |
14.0385 kcal/mol |
6 69@LB@ | |@LB@ 5'-GUAAAA U A CAA CUACGCGAUCUGUGCC C A AAAAA...ACA-3'@LB@ GAGC AUG GGCAAUG GUGCUUUCA UUCUGCGAGG G CUUCC@LB@ :||| ||| :|||||| ||||||||| :||:|||||| | |||||@LB@ UUCG UAC UCGUUAC CACGAAAGU GAGGCGCUCC C GAAGG@LB@3'-UUU...UGACC U AC AG CCAA A ACUAGCG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -49.3967 kcal/mol@LB@Unfolding Energy - mRNA 18.1865 kcal/mol@LB@Unfolding Energy - sRNA 14.0385 kcal/mol@LB@@LB@Position - mRNA 7 -- 68@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 112 |
0.01186 |
0.3513 |
b2021 |
hisC |
-13.06 |
0.059267 |
35 -- 113 |
9 -- 85 |
histidinol-phosphate aminotransferase |
|
_____________34___________________________________________________________________________________114\n_____________|____________________________________________________________________________________|\n5'-GUU...CUGUU_____C__G___________AUUUCCA_______C___ACC_UAC__G__C_____AAAGAG_____________CU_______AACCA...GGC-3'\n______________CCAGC_UC_GGCUGGC__AG________GAAGCG_AUG___G___AG_AA_UGUCG_______GGGUUCUCCGCG__GG_CUUC\n______________|||||_:|_|||||||__||________|||||:_|||___|___||_||_|||||_______:|||||||||||__||_||||\n______________GGUCG_GG_CCGACCG__UC________CUUCGU_UAC___C___UC_UU_ACAGC_______UCCAAGAGGCGC__CC_GAAG\n______3'-UUUUC_____U__G_______AU__AUUAUGAC__________A________G________ACGAAAG____________UC__A____GACUAGCG-5'\n_____________|____________________________________________________________________________________|\n_____________86___________________________________________________________________________________8\n |
99 -- 105 |
18 -- 24 |
-69.7784 kcal/mol |
31.0124 kcal/mol |
25.703 kcal/mol |
34 114@LB@ | |@LB@5'-GUU...CUGUU C G AUUUCCA C ACC UAC G C AAAGAG CU AACCA...GGC-3'@LB@ CCAGC UC GGCUGGC AG GAAGCG AUG G AG AA UGUCG GGGUUCUCCGCG GG CUUC@LB@ ||||| :| ||||||| || |||||: ||| | || || ||||| :||||||||||| || ||||@LB@ GGUCG GG CCGACCG UC CUUCGU UAC C UC UU ACAGC UCCAAGAGGCGC CC GAAG@LB@ 3'-UUUUC U G AU AUUAUGAC A G ACGAAAG UC A GACUAGCG-5'@LB@ | |@LB@ 86 8@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -69.7784 kcal/mol@LB@Unfolding Energy - mRNA 31.0124 kcal/mol@LB@Unfolding Energy - sRNA 25.703 kcal/mol@LB@@LB@Position - mRNA 35 -- 113@LB@Position - sRNA 9 -- 85@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 19 |
0.001375 |
0.2431 |
b0722 |
sdhD |
-16.32 |
0.016452 |
168 -- 195 |
12 -- 41 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________167_____________________________196\n_____________|_______________________________|\n5'-UCC...AUUAC_____________C_____________A___CUCGU...UGG-3'\n______________UGUCGUGCUUUCA__UUCU_CGC_AGG_GUC\n______________|||||||||||||__||||_|||_|||_|||\n______________ACAGCACGAAAGU__AAGA_GCG_UCC_CAG\n3'-UUU...UCGUU_____________CC____G___C_______AAGGA...GCG-5'\n_____________|_______________________________|\n_____________42______________________________11\n |
174 -- 180 |
29 -- 35 |
-35.0246 kcal/mol |
7.60237 kcal/mol |
11.1071 kcal/mol |
167 196@LB@ | |@LB@5'-UCC...AUUAC C A CUCGU...UGG-3'@LB@ UGUCGUGCUUUCA UUCU CGC AGG GUC@LB@ ||||||||||||| |||| ||| ||| |||@LB@ ACAGCACGAAAGU AAGA GCG UCC CAG@LB@3'-UUU...UCGUU CC G C AAGGA...GCG-5'@LB@ | |@LB@ 42 11@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -35.0246 kcal/mol@LB@Unfolding Energy - mRNA 7.60237 kcal/mol@LB@Unfolding Energy - sRNA 11.1071 kcal/mol@LB@@LB@Position - mRNA 168 -- 195@LB@Position - sRNA 12 -- 41@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 91 |
0.009487 |
0.3393 |
b4148 |
sugE |
-13.59 |
0.048204 |
42 -- 77 |
12 -- 46 |
multidrug efflux system protein |
|
_____________41___________________________________78\n_____________|____________________________________|\n5'-CGC...ACGAC___U_________CG__UGUU__________UA___ACAAA...UUA-3'\n______________AGC_GUGUCGUGC__UU____UUUUCUGCGA__GUC\n______________|||_:||||||||__|:____||:||:||||__|||\n______________UCG_UACAGCACG__AG____AAGAGGCGCU__CAG\n3'-UUU...UACAC___U_________AA__UCC___________CC___AAGGA...GCG-5'\n_____________|____________________________________|\n_____________47___________________________________11\n |
66 -- 72 |
17 -- 23 |
-35.5696 kcal/mol |
9.46718 kcal/mol |
12.5096 kcal/mol |
41 78@LB@ | |@LB@5'-CGC...ACGAC U CG UGUU UA ACAAA...UUA-3'@LB@ AGC GUGUCGUGC UU UUUUCUGCGA GUC@LB@ ||| :|||||||| |: ||:||:|||| |||@LB@ UCG UACAGCACG AG AAGAGGCGCU CAG@LB@3'-UUU...UACAC U AA UCC CC AAGGA...GCG-5'@LB@ | |@LB@ 47 11@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -35.5696 kcal/mol@LB@Unfolding Energy - mRNA 9.46718 kcal/mol@LB@Unfolding Energy - sRNA 12.5096 kcal/mol@LB@@LB@Position - mRNA 42 -- 77@LB@Position - sRNA 12 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 101 |
0.01031 |
0.3393 |
b2314 |
dedD |
-14.11 |
0.039362 |
188 -- 259 |
13 -- 86 |
membrane-anchored periplasmic protein involved in septation |
|
_____________187______________________________________________________________________________260\n_____________|________________________________________________________________________________|\n5'-UUG...UUGAC__G__G_GAAG_______________GUUUCA___U____UA_______CGA______________GG_____U______GAUUG...AUU-3'\n______________GC_AG_A____CGG_UGGC_AAGUAA______GAA_CGGU__GUGGGCA___UCGUGCU____GGU____CGC_GGGGGU\n______________||_||_|____|||_||||_||||||______|||_|::|__|||:|||___|||||||____|||____|||_|:||||\n______________CG_UC_U____GCC_ACCG_UUCAUU______CUU_GUUA__CACUCGU___AGCACGA____CCA____GCG_CUCCCA\n_______3'-UUUU__G__G_GG_____G____A______AUGAC____C_____________UAC_______AAGU___AGAG__________GAAGG...GCG-5'\n_____________|________________________________________________________________________________|\n_____________87_______________________________________________________________________________12\n |
238 -- 244 |
33 -- 39 |
-62.0732 kcal/mol |
22.3094 kcal/mol |
25.6538 kcal/mol |
187 260@LB@ | |@LB@5'-UUG...UUGAC G G GAAG GUUUCA U UA CGA GG U GAUUG...AUU-3'@LB@ GC AG A CGG UGGC AAGUAA GAA CGGU GUGGGCA UCGUGCU GGU CGC GGGGGU@LB@ || || | ||| |||| |||||| ||| |::| |||:||| ||||||| ||| ||| |:||||@LB@ CG UC U GCC ACCG UUCAUU CUU GUUA CACUCGU AGCACGA CCA GCG CUCCCA@LB@ 3'-UUUU G G GG G A AUGAC C UAC AAGU AGAG GAAGG...GCG-5'@LB@ | |@LB@ 87 12@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -62.0732 kcal/mol@LB@Unfolding Energy - mRNA 22.3094 kcal/mol@LB@Unfolding Energy - sRNA 25.6538 kcal/mol@LB@@LB@Position - mRNA 188 -- 259@LB@Position - sRNA 13 -- 86@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 72 |
0.00645 |
0.301 |
b2125 |
yehT |
-9.24 |
0.246554 |
1 -- 8 |
14 -- 21 |
putative response regulator in two-component system withYehU |
|
______________1_______9\n______________|_______|\n___________5'-________GCAAC...GUU-3'\n______________CGUGAGGG\n______________||:|||||\n______________GCGCUCCC\n3'-UUU...AAGAG________AGAAG...GCG-5'\n_____________|________|\n_____________22_______13\n |
2 -- 8 |
14 -- 20 |
-15.432 kcal/mol |
1.85513 kcal/mol |
4.33947 kcal/mol |
1 9@LB@ | |@LB@ 5'- GCAAC...GUU-3'@LB@ CGUGAGGG@LB@ ||:|||||@LB@ GCGCUCCC@LB@3'-UUU...AAGAG AGAAG...GCG-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -15.432 kcal/mol@LB@Unfolding Energy - mRNA 1.85513 kcal/mol@LB@Unfolding Energy - sRNA 4.33947 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 86 |
0.008505 |
0.3323 |
b0879 |
macB |
-10.85 |
0.137944 |
147 -- 181 |
15 -- 61 |
macrolide ABC transporter peremase/ATPase |
|
_____________146_____________________________________________182\n_____________|_______________________________________________|\n5'-AAU...AAAGG___U__________________AA____________GA__G______CCAAA...CGG-3'\n______________GCU_GAAGC_____GGGCGAUG__GU_______GGU__UU_GUGAGG\n______________:||_|||||_____|:||:|||__||_______|||__|:_|:||||\n______________UGA_CUUCG_____CUCGUUAC__CA_______CCA__AG_CGCUCC\n3'-UUU...CAUUA___C_____UUACA________AG__CGAAAGU___AG__G______CAGAA...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________14\n |
157 -- 163 |
40 -- 46 |
-34.4359 kcal/mol |
9.61218 kcal/mol |
13.9754 kcal/mol |
146 182@LB@ | |@LB@5'-AAU...AAAGG U AA GA G CCAAA...CGG-3'@LB@ GCU GAAGC GGGCGAUG GU GGU UU GUGAGG@LB@ :|| ||||| |:||:||| || ||| |: |:||||@LB@ UGA CUUCG CUCGUUAC CA CCA AG CGCUCC@LB@3'-UUU...CAUUA C UUACA AG CGAAAGU AG G CAGAA...GCG-5'@LB@ | |@LB@ 62 14@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -34.4359 kcal/mol@LB@Unfolding Energy - mRNA 9.61218 kcal/mol@LB@Unfolding Energy - sRNA 13.9754 kcal/mol@LB@@LB@Position - mRNA 147 -- 181@LB@Position - sRNA 15 -- 61@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 40 -- 46@LB@ |
