| 44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 138 |
0.01576 |
0.3813 |
b3361 |
fic |
-10.85 |
0.137765 |
79 -- 110 |
27 -- 60 |
stationary phase-induced protein putative toxin |
|
_____________78__________________________________111\n_____________|___________________________________|\n5'-CGC...CGUCU________UUC_______UAA____AA________CCAGU...AAC-3'\n______________CUGGGAGC______AGCG___UCGU__UUUUCAGG\n______________||||:|||______|||:___||||__:|||||||\n______________GACCUUCG______UCGU___AGCA__GAAAGUCC\n3'-UUU...AUUAU________UUACAC____UAC____C_________AAGAG...GCG-5'\n_____________|___________________________________|\n_____________61__________________________________26\n |
104 -- 110 |
27 -- 33 |
-28.8548 kcal/mol |
10.0238 kcal/mol |
7.97931 kcal/mol |
78 111@LB@ | |@LB@5'-CGC...CGUCU UUC UAA AA CCAGU...AAC-3'@LB@ CUGGGAGC AGCG UCGU UUUUCAGG@LB@ ||||:||| |||: |||| :|||||||@LB@ GACCUUCG UCGU AGCA GAAAGUCC@LB@3'-UUU...AUUAU UUACAC UAC C AAGAG...GCG-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -28.8548 kcal/mol@LB@Unfolding Energy - mRNA 10.0238 kcal/mol@LB@Unfolding Energy - sRNA 7.97931 kcal/mol@LB@@LB@Position - mRNA 79 -- 110@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 11 |
0.000669 |
0.2043 |
b4154 |
frdA |
-13.85 |
0.043591 |
184 -- 204 |
34 -- 53 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________183___________________205\n_____________|_____________________|\n5'-UAA...AAAAA____CUG___G__________AAACC...UCG-3'\n______________CAAU___GAG_AAUGUCGUGC\n______________||||___|||_||||||||||\n______________GUUA___CUC_UUACAGCACG\n3'-UUU...CCUUC____CA____G__________AAAGU...GCG-5'\n_____________|_____________________|\n_____________54____________________33\n |
198 -- 204 |
34 -- 40 |
-24.005 kcal/mol |
3.86794 kcal/mol |
6.28724 kcal/mol |
183 205@LB@ | |@LB@5'-UAA...AAAAA CUG G AAACC...UCG-3'@LB@ CAAU GAG AAUGUCGUGC@LB@ |||| ||| ||||||||||@LB@ GUUA CUC UUACAGCACG@LB@3'-UUU...CCUUC CA G AAAGU...GCG-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -24.005 kcal/mol@LB@Unfolding Energy - mRNA 3.86794 kcal/mol@LB@Unfolding Energy - sRNA 6.28724 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 23 |
0.001852 |
0.2682 |
b4059 |
ssb |
-13.81 |
0.044308 |
47 -- 78 |
34 -- 64 |
single-stranded DNA-binding protein |
|
_____________46_______________________________79\n_____________|________________________________|\n5'-AUC...UAUAC__________U___UUACCC_G__________AACAA...UUA-3'\n______________AGUAUUGGAA_GCA______G_AGUGUUGUGU\n______________|:||:|||||_|||______|_|:|||:|||:\n______________UUAUGACCUU_CGU______C_UUACAGCACG\n3'-UUU...AUUCA______________UACACU_G__________AAAGU...GCG-5'\n_____________|________________________________|\n_____________65_______________________________33\n |
72 -- 78 |
34 -- 40 |
-28.8532 kcal/mol |
8.27543 kcal/mol |
6.76952 kcal/mol |
46 79@LB@ | |@LB@5'-AUC...UAUAC U UUACCC G AACAA...UUA-3'@LB@ AGUAUUGGAA GCA G AGUGUUGUGU@LB@ |:||:||||| ||| | |:|||:|||:@LB@ UUAUGACCUU CGU C UUACAGCACG@LB@3'-UUU...AUUCA UACACU G AAAGU...GCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -13.81 kcal/mol@LB@Hybridization Energy -28.8532 kcal/mol@LB@Unfolding Energy - mRNA 8.27543 kcal/mol@LB@Unfolding Energy - sRNA 6.76952 kcal/mol@LB@@LB@Position - mRNA 47 -- 78@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 139 |
0.01578 |
0.3813 |
b3386 |
rpe |
-11.91 |
0.092481 |
276 -- 300 |
34 -- 60 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________275_________________________300\n_____________|___________________________|\n5'-CGC...AAGCC____C_________C__U__________-3'\n______________CUGG_AGC__UG_G_GC_GAUGUCGUGC\n______________||||_|||__||_|_||_:|||||||||\n______________GACC_UCG__AC_C_CG_UUACAGCACG\n3'-UUU...AUUAU____U___UU__A_U_____________AAAGU...GCG-5'\n_____________|____________________________|\n_____________61___________________________33\n |
294 -- 300 |
34 -- 40 |
-27.2321 kcal/mol |
8.55668 kcal/mol |
6.76671 kcal/mol |
275 300@LB@ | |@LB@5'-CGC...AAGCC C C U -3'@LB@ CUGG AGC UG G GC GAUGUCGUGC@LB@ |||| ||| || | || :|||||||||@LB@ GACC UCG AC C CG UUACAGCACG@LB@3'-UUU...AUUAU U UU A U AAAGU...GCG-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -27.2321 kcal/mol@LB@Unfolding Energy - mRNA 8.55668 kcal/mol@LB@Unfolding Energy - sRNA 6.76671 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 171 |
0.02102 |
0.4072 |
b1747 |
astA |
-10.86 |
0.137376 |
74 -- 103 |
34 -- 65 |
arginine succinyltransferase |
|
_____________73_______________________________104\n_____________|________________________________|\n5'-GGC...CGUGA________AUU_____________C__G____GUUUU...AAG-3'\n______________UGGUACUG___GCGG_GUG_GCAA_GU_GUGC\n______________|::|||||___||::_|||_||||_||_||||\n______________AUUAUGAC___CGUU_CAC_CGUU_CA_CACG\n3'-UUU...GAUUC________CUU____A___U____A__G____AAAGU...GCG-5'\n_____________|________________________________|\n_____________66_______________________________33\n |
75 -- 81 |
58 -- 64 |
-29.9398 kcal/mol |
12.3081 kcal/mol |
6.77229 kcal/mol |
73 104@LB@ | |@LB@5'-GGC...CGUGA AUU C G GUUUU...AAG-3'@LB@ UGGUACUG GCGG GUG GCAA GU GUGC@LB@ |::||||| ||:: ||| |||| || ||||@LB@ AUUAUGAC CGUU CAC CGUU CA CACG@LB@3'-UUU...GAUUC CUU A U A G AAAGU...GCG-5'@LB@ | |@LB@ 66 33@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -29.9398 kcal/mol@LB@Unfolding Energy - mRNA 12.3081 kcal/mol@LB@Unfolding Energy - sRNA 6.77229 kcal/mol@LB@@LB@Position - mRNA 74 -- 103@LB@Position - sRNA 34 -- 65@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 58 -- 64@LB@ |
