1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
25 |
0.002073 |
0.2692 |
b3163 |
nlpI |
-16.34 |
0.016289 |
1 -- 45 |
38 -- 89 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
______________1____________________________________________________46\n______________|____________________________________________________|\n___________5'-______________U___A__AUUAAA_____________C_________C__AACCU...CAU-3'\n______________AGGGCC_GUAUCCG_CUG_GC____________GAAGCGA__UGAGCAGU_UC\n______________|::|||_|:|:|||_|||_||____________|||||:|__||||||:|_||\n______________UUUCGG_CGUGGGC_GAC_CG____________CUUCGUU__ACUCGUUA_AG\n__________3'-U______U_______C______AUUCAUUAUGAC_______AC________C__CACGA...GCG-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________37\n |
36 -- 42 |
41 -- 47 |
-40.4977 kcal/mol |
9.24688 kcal/mol |
14.9106 kcal/mol |
1 46@LB@ | |@LB@ 5'- U A AUUAAA C C AACCU...CAU-3'@LB@ AGGGCC GUAUCCG CUG GC GAAGCGA UGAGCAGU UC@LB@ |::||| |:|:||| ||| || |||||:| ||||||:| ||@LB@ UUUCGG CGUGGGC GAC CG CUUCGUU ACUCGUUA AG@LB@ 3'-U U C AUUCAUUAUGAC AC C CACGA...GCG-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -40.4977 kcal/mol@LB@Unfolding Energy - mRNA 9.24688 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 1 -- 45@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
50 |
0.004678 |
0.2905 |
b0906 |
ycaP |
-14.80 |
0.029952 |
1 -- 24 |
40 -- 67 |
UPF0702 family putative inner membrane protein |
|
______________1____________________________25\n______________|____________________________|\n___________5'-___UUU_______________________GAAUC...UCU-3'\n______________AGU___UGCUGGAAGC_____GAGCGAUG\n______________|||___|:||||||||_____||||:|||\n______________UCA___AUGACCUUCG_____CUCGUUAC\n3'-UUU...CCGAU___UU___________UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________68____________________________39\n |
18 -- 24 |
40 -- 46 |
-27.5061 kcal/mol |
9.39751 kcal/mol |
3.30504 kcal/mol |
1 25@LB@ | |@LB@ 5'- UUU GAAUC...UCU-3'@LB@ AGU UGCUGGAAGC GAGCGAUG@LB@ ||| |:|||||||| ||||:|||@LB@ UCA AUGACCUUCG CUCGUUAC@LB@3'-UUU...CCGAU UU UUACA AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -27.5061 kcal/mol@LB@Unfolding Energy - mRNA 9.39751 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 1 -- 24@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 40 -- 46@LB@ |
72 |
0.00645 |
0.301 |
b2125 |
yehT |
-9.24 |
0.246554 |
1 -- 8 |
14 -- 21 |
putative response regulator in two-component system withYehU |
|
______________1_______9\n______________|_______|\n___________5'-________GCAAC...GUU-3'\n______________CGUGAGGG\n______________||:|||||\n______________GCGCUCCC\n3'-UUU...AAGAG________AGAAG...GCG-5'\n_____________|________|\n_____________22_______13\n |
2 -- 8 |
14 -- 20 |
-15.432 kcal/mol |
1.85513 kcal/mol |
4.33947 kcal/mol |
1 9@LB@ | |@LB@ 5'- GCAAC...GUU-3'@LB@ CGUGAGGG@LB@ ||:|||||@LB@ GCGCUCCC@LB@3'-UUU...AAGAG AGAAG...GCG-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -15.432 kcal/mol@LB@Unfolding Energy - mRNA 1.85513 kcal/mol@LB@Unfolding Energy - sRNA 4.33947 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 14 -- 20@LB@ |
136 |
0.01542 |
0.379 |
b0428 |
cyoE |
-15.83 |
0.019915 |
1 -- 35 |
23 -- 58 |
protoheme IX farnesyltransferase |
|
______________1____________________________________36\n______________|____________________________________|\n___________5'-_________CCU_______GCA___G_A_________GGUGC...GCA-3'\n______________GGAA_CAAU___GGCAAUG___GUG_U__CAGGUUCU\n______________||||_||||___:||||||___|||_|__||||||||\n______________CCUU_GUUA___UCGUUAC___CAC_A__GUCCAAGA\n3'-UUU...UAUGA____C____CAC_______AG____G_AA________GGCGC...GCG-5'\n_____________|_____________________________________|\n_____________59____________________________________22\n |
29 -- 35 |
23 -- 29 |
-31.8533 kcal/mol |
8.10531 kcal/mol |
7.91355 kcal/mol |
1 36@LB@ | |@LB@ 5'- CCU GCA G A GGUGC...GCA-3'@LB@ GGAA CAAU GGCAAUG GUG U CAGGUUCU@LB@ |||| |||| :|||||| ||| | ||||||||@LB@ CCUU GUUA UCGUUAC CAC A GUCCAAGA@LB@3'-UUU...UAUGA C CAC AG G AA GGCGC...GCG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -31.8533 kcal/mol@LB@Unfolding Energy - mRNA 8.10531 kcal/mol@LB@Unfolding Energy - sRNA 7.91355 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 23 -- 29@LB@ |
35 |
0.003076 |
0.2776 |
b1678 |
ldtE |
-14.38 |
0.035403 |
2 -- 13 |
49 -- 60 |
murein L D-transpeptidase |
|
_____________1____________14\n_____________|____________|\n__________5'-U____________AUUCG...GCC-3'\n______________CUGGAAGCGAUG\n______________||||||||:|||\n______________GACCUUCGUUAC\n3'-UUU...AUUAU____________ACUCG...GCG-5'\n_____________|____________|\n_____________61___________48\n |
7 -- 13 |
49 -- 55 |
-19.7187 kcal/mol |
2.33169 kcal/mol |
3.00762 kcal/mol |
1 14@LB@ | |@LB@ 5'-U AUUCG...GCC-3'@LB@ CUGGAAGCGAUG@LB@ ||||||||:|||@LB@ GACCUUCGUUAC@LB@3'-UUU...AUUAU ACUCG...GCG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -19.7187 kcal/mol@LB@Unfolding Energy - mRNA 2.33169 kcal/mol@LB@Unfolding Energy - sRNA 3.00762 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 49 -- 55@LB@ |
191 |
0.0243 |
0.4226 |
b4511 |
ybdZ |
-10.65 |
0.148355 |
2 -- 30 |
16 -- 45 |
stimulator of EntF adenylation activity MbtH-like |
|
_____________1_________________________________31\n_____________|_________________________________|\n__________5'-C_____________GGAAG_____A_________CCGAU...UAC-3'\n______________GCA___UUGUGCU_____CGGGU__UUCGCGAG\n______________|||___|:|||||_____|:|||__|:||||||\n______________CGU___AGCACGA_____GUCCA__AGGCGCUC\n3'-UUU...ACACU___UAC_______AA________AG________CCAGA...GCG-5'\n_____________|_________________________________|\n_____________46________________________________15\n |
24 -- 30 |
16 -- 22 |
-30.8687 kcal/mol |
10.0459 kcal/mol |
10.1709 kcal/mol |
1 31@LB@ | |@LB@ 5'-C GGAAG A CCGAU...UAC-3'@LB@ GCA UUGUGCU CGGGU UUCGCGAG@LB@ ||| |:||||| |:||| |:||||||@LB@ CGU AGCACGA GUCCA AGGCGCUC@LB@3'-UUU...ACACU UAC AA AG CCAGA...GCG-5'@LB@ | |@LB@ 46 15@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -30.8687 kcal/mol@LB@Unfolding Energy - mRNA 10.0459 kcal/mol@LB@Unfolding Energy - sRNA 10.1709 kcal/mol@LB@@LB@Position - mRNA 2 -- 30@LB@Position - sRNA 16 -- 45@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 16 -- 22@LB@ |
42 |
0.003478 |
0.2776 |
b1882 |
cheY |
-11.00 |
0.130280 |
3 -- 21 |
36 -- 55 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________2____________________22\n_____________|____________________|\n_________5'-GC__G_____U___________CAGGC...UUG-3'\n______________GG_AAUGU_GGCGAUG_CGU\n______________:|_|||||_:||:|||_|||\n______________UC_UUACA_UCGUUAC_GCA\n3'-UUU...GACCU__G_____C_______A___CGAAA...GCG-5'\n_____________|____________________|\n_____________56___________________35\n |
12 -- 18 |
40 -- 46 |
-18.9303 kcal/mol |
4.70419 kcal/mol |
3.22441 kcal/mol |
2 22@LB@ | |@LB@ 5'-GC G U CAGGC...UUG-3'@LB@ GG AAUGU GGCGAUG CGU@LB@ :| ||||| :||:||| |||@LB@ UC UUACA UCGUUAC GCA@LB@3'-UUU...GACCU G C A CGAAA...GCG-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -18.9303 kcal/mol@LB@Unfolding Energy - mRNA 4.70419 kcal/mol@LB@Unfolding Energy - sRNA 3.22441 kcal/mol@LB@@LB@Position - mRNA 3 -- 21@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 40 -- 46@LB@ |
167 |
0.02069 |
0.4072 |
b2897 |
sdhE |
-17.17 |
0.011699 |
7 -- 68 |
8 -- 56 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________6_______________________________________________________________69\n_____________|_______________________________________________________________|\n_____5'-GUAAAA____U___A________CAA_________CUACGCGAUCUGUGCC__________C_A_____AAAAA...ACA-3'\n______________GAGC_AUG__GGCAAUG___GUGCUUUCA________________UUCUGCGAGG_G_CUUCC\n______________:|||_|||__:||||||___|||||||||________________:||:||||||_|_|||||\n______________UUCG_UAC__UCGUUAC___CACGAAAGU________________GAGGCGCUCC_C_GAAGG\n3'-UUU...UGACC____U___AC_______AG__________CCAA________________________A_____ACUAGCG-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________7\n |
54 -- 60 |
15 -- 21 |
-49.3967 kcal/mol |
18.1865 kcal/mol |
14.0385 kcal/mol |
6 69@LB@ | |@LB@ 5'-GUAAAA U A CAA CUACGCGAUCUGUGCC C A AAAAA...ACA-3'@LB@ GAGC AUG GGCAAUG GUGCUUUCA UUCUGCGAGG G CUUCC@LB@ :||| ||| :|||||| ||||||||| :||:|||||| | |||||@LB@ UUCG UAC UCGUUAC CACGAAAGU GAGGCGCUCC C GAAGG@LB@3'-UUU...UGACC U AC AG CCAA A ACUAGCG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -49.3967 kcal/mol@LB@Unfolding Energy - mRNA 18.1865 kcal/mol@LB@Unfolding Energy - sRNA 14.0385 kcal/mol@LB@@LB@Position - mRNA 7 -- 68@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 15 -- 21@LB@ |
172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |