| 178 |
0.02201 |
0.4113 |
b4176 |
yjeT |
-16.79 |
0.013635 |
217 -- 249 |
54 -- 87 |
DUF2065 family protein |
|
_____________216_________________________________250\n_____________|___________________________________|\n5'-UCA...AAUCU____________CC______U______________GUUUA...CGA-3'\n______________GGCUGGCGCUUG__CUGGUU___UGGUACUGGAAG\n______________:||::||:|::|__||||:|___|::|||||||||\n______________UCGGUCGUGGGC__GACCGA___AUUAUGACCUUC\n________3'-UUU____________C_______UUC____________GUUAC...GCG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
243 -- 249 |
54 -- 60 |
-41.1583 kcal/mol |
10.0538 kcal/mol |
14.3172 kcal/mol |
216 250@LB@ | |@LB@5'-UCA...AAUCU CC U GUUUA...CGA-3'@LB@ GGCUGGCGCUUG CUGGUU UGGUACUGGAAG@LB@ :||::||:|::| ||||:| |::|||||||||@LB@ UCGGUCGUGGGC GACCGA AUUAUGACCUUC@LB@ 3'-UUU C UUC GUUAC...GCG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -41.1583 kcal/mol@LB@Unfolding Energy - mRNA 10.0538 kcal/mol@LB@Unfolding Energy - sRNA 14.3172 kcal/mol@LB@@LB@Position - mRNA 217 -- 249@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 134 |
0.01479 |
0.3709 |
b1930 |
yedF |
-8.51 |
0.315187 |
12 -- 23 |
55 -- 66 |
putative TusA family sulfurtransferase |
|
_____________11___________24\n_____________|____________|\n5'-ACG...CUGGC___U________UGAUU...AAG-3'\n______________GUA_UACUGGGA\n______________|||_||||||:|\n______________CAU_AUGACCUU\n3'-UUU...CGAUU___U________CGUUA...GCG-5'\n_____________|____________|\n_____________67___________54\n |
17 -- 23 |
55 -- 61 |
-12.6769 kcal/mol |
2.14533 kcal/mol |
2.01956 kcal/mol |
11 24@LB@ | |@LB@5'-ACG...CUGGC U UGAUU...AAG-3'@LB@ GUA UACUGGGA@LB@ ||| ||||||:|@LB@ CAU AUGACCUU@LB@3'-UUU...CGAUU U CGUUA...GCG-5'@LB@ | |@LB@ 67 54@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -12.6769 kcal/mol@LB@Unfolding Energy - mRNA 2.14533 kcal/mol@LB@Unfolding Energy - sRNA 2.01956 kcal/mol@LB@@LB@Position - mRNA 12 -- 23@LB@Position - sRNA 55 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 144 |
0.01729 |
0.3998 |
b2913 |
serA |
-13.50 |
0.049990 |
182 -- 221 |
55 -- 90 |
D-3-phosphoglycerate dehydrogenase |
|
_____________181______________________________________222\n_____________|________________________________________|\n5'-UGU...AUUUC_____A___G___G___AAA____AA_____UC_______AAAGA...CCA-3'\n______________AAAAG_CAG_AUU_GGU___UGGC__AGGUA__GCUGGAG\n______________|||||_|||_|::_||:___||||__|:|||__:|||||:\n______________UUUUC_GUC_UGG_CCG___ACCG__UUCAU__UGACCUU\n___________3'-_____G___G___G__________A______UA_______CGUUA...GCG-5'\n______________|_______________________________________|\n______________90______________________________________54\n |
215 -- 221 |
55 -- 61 |
-33.5694 kcal/mol |
6.44391 kcal/mol |
13.6256 kcal/mol |
181 222@LB@ | |@LB@5'-UGU...AUUUC A G G AAA AA UC AAAGA...CCA-3'@LB@ AAAAG CAG AUU GGU UGGC AGGUA GCUGGAG@LB@ ||||| ||| |:: ||: |||| |:||| :|||||:@LB@ UUUUC GUC UGG CCG ACCG UUCAU UGACCUU@LB@ 3'- G G G A UA CGUUA...GCG-5'@LB@ | |@LB@ 90 54@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -33.5694 kcal/mol@LB@Unfolding Energy - mRNA 6.44391 kcal/mol@LB@Unfolding Energy - sRNA 13.6256 kcal/mol@LB@@LB@Position - mRNA 182 -- 221@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 164 |
0.02028 |
0.4072 |
b3295 |
rpoA |
-11.98 |
0.089862 |
19 -- 43 |
66 -- 90 |
RNA polymerase alpha subunit |
|
_____________18_________________________44\n_____________|__________________________|\n5'-GAA...CGCGU__________U__G_A__________CAGCG...GUG-3'\n______________GAAAGCC_GC_CU_G_GCUGGCUGAG\n______________:||||||_||_|:_|_|||||||:||\n______________UUUUCGG_CG_GG_C_CGACCGAUUC\n___________3'-_______U__U__G____________AUUAU...GCG-5'\n______________|_________________________|\n______________90________________________65\n |
37 -- 43 |
66 -- 72 |
-33.5627 kcal/mol |
9.82436 kcal/mol |
11.7544 kcal/mol |
18 44@LB@ | |@LB@5'-GAA...CGCGU U G A CAGCG...GUG-3'@LB@ GAAAGCC GC CU G GCUGGCUGAG@LB@ :|||||| || |: | |||||||:||@LB@ UUUUCGG CG GG C CGACCGAUUC@LB@ 3'- U U G AUUAU...GCG-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.5627 kcal/mol@LB@Unfolding Energy - mRNA 9.82436 kcal/mol@LB@Unfolding Energy - sRNA 11.7544 kcal/mol@LB@@LB@Position - mRNA 19 -- 43@LB@Position - sRNA 66 -- 90@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 183 |
0.02251 |
0.4113 |
b4067 |
actP |
-16.98 |
0.012652 |
22 -- 44 |
66 -- 86 |
acetate transporter |
|
_____________21______________________45\n_____________|_______________________|\n5'-AUC...UGAUC___UUC_________________CACGC...GGC-3'\n______________GCC___GCGCCCGGCUGGCUGGG\n______________|||___||:|||||||||||::|\n______________CGG___CGUGGGCCGACCGAUUC\n_______3'-UUUU___U___________________AUUAU...GCG-5'\n_____________|_______________________|\n_____________87______________________65\n |
38 -- 44 |
66 -- 72 |
-41.8503 kcal/mol |
13.121 kcal/mol |
11.7541 kcal/mol |
21 45@LB@ | |@LB@5'-AUC...UGAUC UUC CACGC...GGC-3'@LB@ GCC GCGCCCGGCUGGCUGGG@LB@ ||| ||:|||||||||||::|@LB@ CGG CGUGGGCCGACCGAUUC@LB@ 3'-UUUU U AUUAU...GCG-5'@LB@ | |@LB@ 87 65@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -41.8503 kcal/mol@LB@Unfolding Energy - mRNA 13.121 kcal/mol@LB@Unfolding Energy - sRNA 11.7541 kcal/mol@LB@@LB@Position - mRNA 22 -- 44@LB@Position - sRNA 66 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 185 |
0.02285 |
0.4113 |
b0920 |
elyC |
-11.60 |
0.104081 |
77 -- 89 |
66 -- 78 |
envelope biogenesis factor; DUF218 superfamily protein |
|
_____________76____________90\n_____________|_____________|\n5'-UUG...CUCCA_____________ACGUU...GCC-3'\n______________CCGGUUGGCUAAG\n______________||||:||||||||\n______________GGCCGACCGAUUC\n3'-UUU...UCGUG_____________AUUAU...GCG-5'\n_____________|_____________|\n_____________79____________65\n |
83 -- 89 |
66 -- 72 |
-24.3939 kcal/mol |
5.56302 kcal/mol |
7.23276 kcal/mol |
76 90@LB@ | |@LB@5'-UUG...CUCCA ACGUU...GCC-3'@LB@ CCGGUUGGCUAAG@LB@ ||||:||||||||@LB@ GGCCGACCGAUUC@LB@3'-UUU...UCGUG AUUAU...GCG-5'@LB@ | |@LB@ 79 65@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -24.3939 kcal/mol@LB@Unfolding Energy - mRNA 5.56302 kcal/mol@LB@Unfolding Energy - sRNA 7.23276 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 66 -- 78@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 24 |
0.001915 |
0.2682 |
b0893 |
serS |
-16.11 |
0.017871 |
52 -- 73 |
67 -- 90 |
seryl-tRNA synthetase |
|
_____________51_______________________74\n_____________|________________________|\n5'-AAA...UGGCG________________________ACAGG...UUG-3'\n______________AAAAGCU__CGCCUGGCUGGCUGA\n______________||||||:__|:||:||||||||:|\n______________UUUUCGG__GUGGGCCGACCGAUU\n___________3'-_______UC_______________CAUUA...GCG-5'\n______________|_______________________|\n______________90______________________66\n |
67 -- 73 |
67 -- 73 |
-35.7282 kcal/mol |
7.88567 kcal/mol |
11.7355 kcal/mol |
51 74@LB@ | |@LB@5'-AAA...UGGCG ACAGG...UUG-3'@LB@ AAAAGCU CGCCUGGCUGGCUGA@LB@ ||||||: |:||:||||||||:|@LB@ UUUUCGG GUGGGCCGACCGAUU@LB@ 3'- UC CAUUA...GCG-5'@LB@ | |@LB@ 90 66@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -35.7282 kcal/mol@LB@Unfolding Energy - mRNA 7.88567 kcal/mol@LB@Unfolding Energy - sRNA 11.7355 kcal/mol@LB@@LB@Position - mRNA 52 -- 73@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 77 |
0.00734 |
0.3134 |
b1793 |
yoaF |
-12.59 |
0.071143 |
233 -- 250 |
68 -- 86 |
DUF333 family outer membrane lipoprotein |
|
_____________232_________________251\n_____________|___________________|\n5'-GAU...UGCUU___________________UUCAA...UGG-3'\n______________GCUGGU_CCUGGCUGGUUG\n______________||::|:_||:||||||:|:\n______________CGGUCG_GGGCCGACCGAU\n_______3'-UUUU______U____________UCAUU...GCG-5'\n_____________|___________________|\n_____________87__________________67\n |
243 -- 249 |
69 -- 75 |
-29.581 kcal/mol |
5.32768 kcal/mol |
11.6617 kcal/mol |
232 251@LB@ | |@LB@5'-GAU...UGCUU UUCAA...UGG-3'@LB@ GCUGGU CCUGGCUGGUUG@LB@ ||::|: ||:||||||:|:@LB@ CGGUCG GGGCCGACCGAU@LB@ 3'-UUUU U UCAUU...GCG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -29.581 kcal/mol@LB@Unfolding Energy - mRNA 5.32768 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 233 -- 250@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
