| 18 |
0.001289 |
0.2406 |
b3930 |
menA |
-10.08 |
0.182848 |
73 -- 82 |
42 -- 51 |
1 4-dihydroxy-2-naphthoate octaprenyltransferase |
|
_____________72_________83\n_____________|__________|\n5'-AGC...AGAUU__________ACAUC...CGC-3'\n______________AUGUGAGCAA\n______________||||||||||\n______________UACACUCGUU\n3'-UUU...UUCGU__________ACAGC...GCG-5'\n_____________|__________|\n_____________52_________41\n |
76 -- 82 |
42 -- 48 |
-14.1762 kcal/mol |
2.92742 kcal/mol |
1.16834 kcal/mol |
72 83@LB@ | |@LB@5'-AGC...AGAUU ACAUC...CGC-3'@LB@ AUGUGAGCAA@LB@ ||||||||||@LB@ UACACUCGUU@LB@3'-UUU...UUCGU ACAGC...GCG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -14.1762 kcal/mol@LB@Unfolding Energy - mRNA 2.92742 kcal/mol@LB@Unfolding Energy - sRNA 1.16834 kcal/mol@LB@@LB@Position - mRNA 73 -- 82@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 174 |
0.02116 |
0.4072 |
b3081 |
fadH |
-11.31 |
0.116093 |
186 -- 215 |
37 -- 63 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________185______________________________216\n_____________|________________________________|\n5'-UGG...UUUAC______________UUUA_____UACCC____CUGUU...ACC-3'\n______________AUACUGGA__CAAU____UGAGC_____GUCG\n______________||||||||__||||____|||||_____||||\n______________UAUGACCU__GUUA____ACUCG_____CAGC\n3'-UUU...UUCAU________UC____C________UUA______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
187 -- 193 |
56 -- 62 |
-21.1868 kcal/mol |
6.57497 kcal/mol |
3.30267 kcal/mol |
185 216@LB@ | |@LB@5'-UGG...UUUAC UUUA UACCC CUGUU...ACC-3'@LB@ AUACUGGA CAAU UGAGC GUCG@LB@ |||||||| |||| ||||| ||||@LB@ UAUGACCU GUUA ACUCG CAGC@LB@3'-UUU...UUCAU UC C UUA ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -21.1868 kcal/mol@LB@Unfolding Energy - mRNA 6.57497 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 186 -- 215@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 107 |
0.0112 |
0.3489 |
b3012 |
dkgA |
-15.28 |
0.024842 |
250 -- 292 |
50 -- 87 |
2 5-diketo-D-gluconate reductase A |
|
_____________249__________________________________________293\n_____________|____________________________________________|\n5'-CUG...GCCCC______G___G___GUC____AAGC________A__________CACCGCCA-3'\n______________AGCUGG_ACU_GGC___UGGC____AAGUAAUG__GGAAGUAAU\n______________|||::|_||:_|||___||||____|||||||:__|||||:|||\n______________UCGGUC_UGG_CCG___ACCG____UUCAUUAU__CCUUCGUUA\n________3'-UUU______G___G__________A___________GA_________CACUC...GCG-5'\n_____________|____________________________________________|\n_____________88___________________________________________49\n |
286 -- 292 |
50 -- 56 |
-41.0731 kcal/mol |
11.2031 kcal/mol |
14.5934 kcal/mol |
249 293@LB@ | |@LB@5'-CUG...GCCCC G G GUC AAGC A CACCGCCA-3'@LB@ AGCUGG ACU GGC UGGC AAGUAAUG GGAAGUAAU@LB@ |||::| ||: ||| |||| |||||||: |||||:|||@LB@ UCGGUC UGG CCG ACCG UUCAUUAU CCUUCGUUA@LB@ 3'-UUU G G A GA CACUC...GCG-5'@LB@ | |@LB@ 88 49@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -41.0731 kcal/mol@LB@Unfolding Energy - mRNA 11.2031 kcal/mol@LB@Unfolding Energy - sRNA 14.5934 kcal/mol@LB@@LB@Position - mRNA 250 -- 292@LB@Position - sRNA 50 -- 87@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 110 |
0.01171 |
0.3513 |
b0613 |
citG |
-15.71 |
0.020947 |
180 -- 206 |
37 -- 61 |
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase |
|
_____________179_________________________207\n_____________|___________________________|\n5'-UGA...CAACC__A________C__C___A________AUGCC...UCA-3'\n______________GC_UGGAGGCA_UG_UGA_CGAUGUCG\n______________:|_||||:|||_||_|||_|:||||||\n______________UG_ACCUUCGU_AC_ACU_GUUACAGC\n3'-UUU...CAUUA___________U______C________ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
200 -- 206 |
37 -- 43 |
-28.5741 kcal/mol |
9.5654 kcal/mol |
3.30158 kcal/mol |
179 207@LB@ | |@LB@5'-UGA...CAACC A C C A AUGCC...UCA-3'@LB@ GC UGGAGGCA UG UGA CGAUGUCG@LB@ :| ||||:||| || ||| |:||||||@LB@ UG ACCUUCGU AC ACU GUUACAGC@LB@3'-UUU...CAUUA U C ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -15.71 kcal/mol@LB@Hybridization Energy -28.5741 kcal/mol@LB@Unfolding Energy - mRNA 9.5654 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 180 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 140 |
0.01604 |
0.3851 |
b4022 |
rluF |
-13.68 |
0.046602 |
82 -- 103 |
39 -- 60 |
23S rRNA pseudouridine(2604) synthase |
|
_____________81______________________104\n_____________|_______________________|\n5'-UUA...UGCUU____A_______U__________AACGA...UGU-3'\n______________CUGG_AAGUGAU_UGAGCAG_GU\n______________||||_|||::||_||||||:_||\n______________GACC_UUCGUUA_ACUCGUU_CA\n3'-UUU...AUUAU____________C_______A__GCACG...GCG-5'\n_____________|_______________________|\n_____________61______________________38\n |
95 -- 101 |
42 -- 48 |
-22.0004 kcal/mol |
5.021 kcal/mol |
3.3001 kcal/mol |
81 104@LB@ | |@LB@5'-UUA...UGCUU A U AACGA...UGU-3'@LB@ CUGG AAGUGAU UGAGCAG GU@LB@ |||| |||::|| ||||||: ||@LB@ GACC UUCGUUA ACUCGUU CA@LB@3'-UUU...AUUAU C A GCACG...GCG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -22.0004 kcal/mol@LB@Unfolding Energy - mRNA 5.021 kcal/mol@LB@Unfolding Energy - sRNA 3.3001 kcal/mol@LB@@LB@Position - mRNA 82 -- 103@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 32 |
0.002983 |
0.2776 |
b3032 |
cpdA |
-14.85 |
0.029357 |
133 -- 158 |
40 -- 64 |
3' 5' cAMP phosphodiesterase |
|
_____________132_________________________159\n_____________|___________________________|\n5'-ACG...GUUGC_______UUU____C____________GCGAU...UGU-3'\n______________GAUACUG___AGCA_AUG_GAGCGAUG\n______________:||||||___||||_|||_||||:|||\n______________UUAUGAC___UCGU_UAC_CUCGUUAC\n3'-UUU...AUUCA_______CU_________A________AGCAC...GCG-5'\n_____________|___________________________|\n_____________65__________________________39\n |
152 -- 158 |
40 -- 46 |
-24.327 kcal/mol |
6.1707 kcal/mol |
3.30198 kcal/mol |
132 159@LB@ | |@LB@5'-ACG...GUUGC UUU C GCGAU...UGU-3'@LB@ GAUACUG AGCA AUG GAGCGAUG@LB@ :|||||| |||| ||| ||||:|||@LB@ UUAUGAC UCGU UAC CUCGUUAC@LB@3'-UUU...AUUCA CU A AGCAC...GCG-5'@LB@ | |@LB@ 65 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -24.327 kcal/mol@LB@Unfolding Energy - mRNA 6.1707 kcal/mol@LB@Unfolding Energy - sRNA 3.30198 kcal/mol@LB@@LB@Position - mRNA 133 -- 158@LB@Position - sRNA 40 -- 64@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 73 |
0.006758 |
0.3082 |
b0073 |
leuB |
-14.41 |
0.035044 |
252 -- 295 |
42 -- 89 |
3-isopropylmalate dehydrogenase NAD(+)-dependent |
|
_____________251_______________________________________________296\n_____________|_________________________________________________|\n5'-AAA...GUCCG_____G_UG____A__________A__________U__C_____C____CCGCU-3'\n______________GAAGU_A__ACCC_GGC__GCUGA__AGUGCUGGA_GC___GUG_GCAA\n______________:|||:_|__||||_|||__|||:|__|:|:|||||_||___|||_||||\n______________UUUCG_U__UGGG_CCG__CGAUU__UUAUGACCU_CG___CAC_CGUU\n__________3'-U_____G_CG________AC_____CA_________U__UUA___U____ACAGC...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________41\n |
277 -- 283 |
56 -- 62 |
-44.364 kcal/mol |
15.0484 kcal/mol |
14.9103 kcal/mol |
251 296@LB@ | |@LB@5'-AAA...GUCCG G UG A A U C C CCGCU-3'@LB@ GAAGU A ACCC GGC GCUGA AGUGCUGGA GC GUG GCAA@LB@ :|||: | |||| ||| |||:| |:|:||||| || ||| ||||@LB@ UUUCG U UGGG CCG CGAUU UUAUGACCU CG CAC CGUU@LB@ 3'-U G CG AC CA U UUA U ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -44.364 kcal/mol@LB@Unfolding Energy - mRNA 15.0484 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 252 -- 295@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 187 |
0.023 |
0.4113 |
b2311 |
ubiX |
-11.39 |
0.112499 |
264 -- 277 |
17 -- 30 |
3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|
_____________263____________278\n_____________|______________|\n5'-UGA...UAUUA________G_____UGUCA...AUC-3'\n______________CAGGUUCU_CGCGA\n______________||||||||_|||||\n______________GUCCAAGA_GCGCU\n3'-UUU...CGAAA________G_____CCCAG...GCG-5'\n_____________|______________|\n_____________31_____________16\n |
265 -- 271 |
23 -- 29 |
-23.8621 kcal/mol |
5.17919 kcal/mol |
7.29042 kcal/mol |
263 278@LB@ | |@LB@5'-UGA...UAUUA G UGUCA...AUC-3'@LB@ CAGGUUCU CGCGA@LB@ |||||||| |||||@LB@ GUCCAAGA GCGCU@LB@3'-UUU...CGAAA G CCCAG...GCG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -23.8621 kcal/mol@LB@Unfolding Energy - mRNA 5.17919 kcal/mol@LB@Unfolding Energy - sRNA 7.29042 kcal/mol@LB@@LB@Position - mRNA 264 -- 277@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
