88 |
0.008994 |
0.3393 |
b0721 |
sdhC |
-13.41 |
0.051766 |
40 -- 58 |
43 -- 60 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________39__________________59\n_____________|___________________|\n5'-UCC...CGCAU_____________UUU___UGACG...CCG-3'\n______________CUGGAAGCAGUGU___GCA\n______________|||||||||:|||___|||\n______________GACCUUCGUUACA___CGU\n3'-UUU...AUUAU_____________CU____UACAG...GCG-5'\n_____________|___________________|\n_____________61__________________42\n |
46 -- 52 |
48 -- 54 |
-24.0509 kcal/mol |
7.34137 kcal/mol |
3.29917 kcal/mol |
39 59@LB@ | |@LB@5'-UCC...CGCAU UUU UGACG...CCG-3'@LB@ CUGGAAGCAGUGU GCA@LB@ |||||||||:||| |||@LB@ GACCUUCGUUACA CGU@LB@3'-UUU...AUUAU CU UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -24.0509 kcal/mol@LB@Unfolding Energy - mRNA 7.34137 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 40 -- 58@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 48 -- 54@LB@ |
95 |
0.009964 |
0.3393 |
b3902 |
rhaD |
-16.21 |
0.017174 |
243 -- 283 |
43 -- 89 |
rhamnulose-1-phosphate aldolase |
|
_____________242_______________________________________________284\n_____________|_________________________________________________|\n5'-AGA...UGAUC_______C____GA__C________AAG_____________________CAACG...UGA-3'\n______________AAAGCCA_CACC__CG_CUGGCUGA_____GCUGGGA______UGAGCG\n______________|||||||_||||__||_||||||:|_____:||||:|______|||||:\n______________UUUCGGU_GUGG__GC_GACCGAUU_____UGACCUU______ACUCGU\n__________3'-U_______C________C________CAUUA_______CGUUAC______UACAG...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________42\n |
271 -- 277 |
55 -- 61 |
-44.1539 kcal/mol |
13.0365 kcal/mol |
14.9102 kcal/mol |
242 284@LB@ | |@LB@5'-AGA...UGAUC C GA C AAG CAACG...UGA-3'@LB@ AAAGCCA CACC CG CUGGCUGA GCUGGGA UGAGCG@LB@ ||||||| |||| || ||||||:| :||||:| |||||:@LB@ UUUCGGU GUGG GC GACCGAUU UGACCUU ACUCGU@LB@ 3'-U C C CAUUA CGUUAC UACAG...GCG-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -16.21 kcal/mol@LB@Hybridization Energy -44.1539 kcal/mol@LB@Unfolding Energy - mRNA 13.0365 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 243 -- 283@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 55 -- 61@LB@ |
141 |
0.01639 |
0.3906 |
b1585 |
ynfC |
-13.03 |
0.059974 |
17 -- 62 |
43 -- 84 |
UPF0257 family lipoprotein |
|
_____________16______________________________________________63\n_____________|_______________________________________________|\n5'-GCU...GCUCA___G_U______GC_________CC__GG_U_______GG_C_____GAAGC...UCU-3'\n______________CAG_A_CCCGGC__GGC_GAGUA__GC__G_GAGGCGA__G_GAGCA\n______________|||_|_||||||__|||_:||||__:|__|_||:||:|__|_|||||\n______________GUC_U_GGGCCG__CCG_UUCAU__UG__C_CUUCGUU__C_CUCGU\n_____3'-UUUUCG___G________A____A_____UA__A__________A__A_____UACAG...GCG-5'\n_____________|_______________________________________________|\n_____________85______________________________________________42\n |
47 -- 53 |
51 -- 57 |
-45.3683 kcal/mol |
17.4395 kcal/mol |
14.8963 kcal/mol |
16 63@LB@ | |@LB@5'-GCU...GCUCA G U GC CC GG U GG C GAAGC...UCU-3'@LB@ CAG A CCCGGC GGC GAGUA GC G GAGGCGA G GAGCA@LB@ ||| | |||||| ||| :|||| :| | ||:||:| | |||||@LB@ GUC U GGGCCG CCG UUCAU UG C CUUCGUU C CUCGU@LB@ 3'-UUUUCG G A A UA A A A UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -45.3683 kcal/mol@LB@Unfolding Energy - mRNA 17.4395 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 17 -- 62@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 51 -- 57@LB@ |
159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
190 |
0.02395 |
0.4226 |
b1189 |
dadA |
-13.37 |
0.052568 |
210 -- 233 |
43 -- 66 |
D-amino acid dehydrogenase |
|
_____________209_______________________234\n_____________|_________________________|\n5'-CCG...GAGUU__C_____G________________GGCGU...CGG-3'\n______________GU_AUACU_GGAAGUGGUGUG_GUA\n______________||_|||||_|||||:::||||_|:|\n______________CA_UAUGA_CCUUCGUUACAC_CGU\n3'-UUU...CGAUU__U__________________U___UACAG...GCG-5'\n_____________|_________________________|\n_____________67________________________42\n |
219 -- 225 |
52 -- 58 |
-24.725 kcal/mol |
8.04945 kcal/mol |
3.30463 kcal/mol |
209 234@LB@ | |@LB@5'-CCG...GAGUU C G GGCGU...CGG-3'@LB@ GU AUACU GGAAGUGGUGUG GUA@LB@ || ||||| |||||:::|||| |:|@LB@ CA UAUGA CCUUCGUUACAC CGU@LB@3'-UUU...CGAUU U U UACAG...GCG-5'@LB@ | |@LB@ 67 42@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -24.725 kcal/mol@LB@Unfolding Energy - mRNA 8.04945 kcal/mol@LB@Unfolding Energy - sRNA 3.30463 kcal/mol@LB@@LB@Position - mRNA 210 -- 233@LB@Position - sRNA 43 -- 66@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 52 -- 58@LB@ |
31 |
0.002952 |
0.2776 |
b3052 |
hldE |
-18.29 |
0.007494 |
235 -- 261 |
44 -- 68 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________234_________________________262\n_____________|___________________________|\n5'-GCG...UGCAG________G___UU__________U__UGGAU...CGC-3'\n______________GAGUGAUG_UGG__GGUGAUGUGA_GC\n______________:|||:||:_|||__:|::||||||_||\n______________UUCAUUAU_ACC__UCGUUACACU_CG\n3'-UUU...ACCGA________G___U______________UUACA...GCG-5'\n_____________|___________________________|\n_____________69__________________________43\n |
252 -- 258 |
46 -- 52 |
-27.5603 kcal/mol |
5.96824 kcal/mol |
3.30414 kcal/mol |
234 262@LB@ | |@LB@5'-GCG...UGCAG G UU U UGGAU...CGC-3'@LB@ GAGUGAUG UGG GGUGAUGUGA GC@LB@ :|||:||: ||| :|::|||||| ||@LB@ UUCAUUAU ACC UCGUUACACU CG@LB@3'-UUU...ACCGA G U UUACA...GCG-5'@LB@ | |@LB@ 69 43@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -27.5603 kcal/mol@LB@Unfolding Energy - mRNA 5.96824 kcal/mol@LB@Unfolding Energy - sRNA 3.30414 kcal/mol@LB@@LB@Position - mRNA 235 -- 261@LB@Position - sRNA 44 -- 68@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 46 -- 52@LB@ |
39 |
0.003417 |
0.2776 |
b4469 |
ygiQ |
-15.58 |
0.022035 |
190 -- 206 |
44 -- 60 |
Radical SAM superfamily protein |
|
_____________189_______________207\n_____________|_________________|\n5'-GCG...CAUUU__________AA_____UCUAU...CUC-3'\n______________CUGGAAGCAA__UGAGC\n______________||||||||||__|||||\n______________GACCUUCGUU__ACUCG\n3'-UUU...AUUAU__________AC_____UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
193 -- 199 |
51 -- 57 |
-24.5566 kcal/mol |
5.6787 kcal/mol |
3.2985 kcal/mol |
189 207@LB@ | |@LB@5'-GCG...CAUUU AA UCUAU...CUC-3'@LB@ CUGGAAGCAA UGAGC@LB@ |||||||||| |||||@LB@ GACCUUCGUU ACUCG@LB@3'-UUU...AUUAU AC UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -24.5566 kcal/mol@LB@Unfolding Energy - mRNA 5.6787 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
74 |
0.006788 |
0.3082 |
b3525 |
yhjH |
-16.42 |
0.015793 |
272 -- 288 |
44 -- 60 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________271_______________289\n_____________|_________________|\n5'-UUA...CGUUU____UU___________GUGCU...CCU-3'\n______________UUGG__GCAGUGUGAGC\n______________:|||__|||:|||||||\n______________GACC__CGUUACACUCG\n3'-UUU...AUUAU____UU___________UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
279 -- 285 |
47 -- 53 |
-25.6078 kcal/mol |
5.89114 kcal/mol |
3.2985 kcal/mol |
271 289@LB@ | |@LB@5'-UUA...CGUUU UU GUGCU...CCU-3'@LB@ UUGG GCAGUGUGAGC@LB@ :||| |||:|||||||@LB@ GACC CGUUACACUCG@LB@3'-UUU...AUUAU UU UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.6078 kcal/mol@LB@Unfolding Energy - mRNA 5.89114 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 47 -- 53@LB@ |
83 |
0.008249 |
0.3318 |
b0183 |
rnhB |
-13.04 |
0.059790 |
42 -- 55 |
44 -- 58 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________41______________56\n_____________|_______________|\n5'-AAU...UUGCA_______________CGCAA...UCC-3'\n______________GGAAG_AGUGUGAGC\n______________|||||_|:|||||||\n______________CCUUC_UUACACUCG\n3'-UUU...UAUGA_____G_________UUACA...GCG-5'\n_____________|_______________|\n_____________59______________43\n |
49 -- 55 |
44 -- 50 |
-21.6429 kcal/mol |
5.39444 kcal/mol |
3.20799 kcal/mol |
41 56@LB@ | |@LB@5'-AAU...UUGCA CGCAA...UCC-3'@LB@ GGAAG AGUGUGAGC@LB@ ||||| |:|||||||@LB@ CCUUC UUACACUCG@LB@3'-UUU...UAUGA G UUACA...GCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -21.6429 kcal/mol@LB@Unfolding Energy - mRNA 5.39444 kcal/mol@LB@Unfolding Energy - sRNA 3.20799 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 44 -- 50@LB@ |
108 |
0.01121 |
0.3489 |
b4195 |
ulaC |
-11.73 |
0.099158 |
148 -- 168 |
44 -- 62 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________147___________________169\n_____________|_____________________|\n5'-GCG...GAAAC_____________CAAA____AUUUC...UGG-3'\n______________UGCUGGAAGUGAU____GAGC\n______________|:|||||||::||____||||\n______________AUGACCUUCGUUA____CUCG\n3'-UUU...UCAUU_____________CA______UUACA...GCG-5'\n_____________|_____________________|\n_____________63____________________43\n |
152 -- 158 |
52 -- 58 |
-21.7326 kcal/mol |
6.70621 kcal/mol |
3.30069 kcal/mol |
147 169@LB@ | |@LB@5'-GCG...GAAAC CAAA AUUUC...UGG-3'@LB@ UGCUGGAAGUGAU GAGC@LB@ |:|||||||::|| ||||@LB@ AUGACCUUCGUUA CUCG@LB@3'-UUU...UCAUU CA UUACA...GCG-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -21.7326 kcal/mol@LB@Unfolding Energy - mRNA 6.70621 kcal/mol@LB@Unfolding Energy - sRNA 3.30069 kcal/mol@LB@@LB@Position - mRNA 148 -- 168@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |