| 1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
1.064e-05 |
0.01787 |
b1683 |
sufB |
-21.37 |
0.002185 |
208 -- 233 |
38 -- 66 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________207___________________________234\n_____________|_____________________________|\n5'-GUU...GUCUC________________C____________AAAAC...AGC-3'\n______________GUAAUACU_GAAGCAA__UGA_CGAUGUC\n______________||||||||_|||||||__|||_|:|||||\n______________CAUUAUGA_CUUCGUU__ACU_GUUACAG\n3'-UUU...CGAUU________C_______AC___C_______CACGA...GCG-5'\n_____________|_____________________________|\n_____________67____________________________37\n |
227 -- 233 |
38 -- 44 |
-29.4313 kcal/mol |
4.7571 kcal/mol |
3.30527 kcal/mol |
207 234@LB@ | |@LB@5'-GUU...GUCUC C AAAAC...AGC-3'@LB@ GUAAUACU GAAGCAA UGA CGAUGUC@LB@ |||||||| ||||||| ||| |:|||||@LB@ CAUUAUGA CUUCGUU ACU GUUACAG@LB@3'-UUU...CGAUU C AC C CACGA...GCG-5'@LB@ | |@LB@ 67 37@LB@@LB@@LB@Energy -21.37 kcal/mol@LB@Hybridization Energy -29.4313 kcal/mol@LB@Unfolding Energy - mRNA 4.7571 kcal/mol@LB@Unfolding Energy - sRNA 3.30527 kcal/mol@LB@@LB@Position - mRNA 208 -- 233@LB@Position - sRNA 38 -- 66@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 3 |
2.244e-05 |
0.02513 |
b1107 |
nagZ |
-17.54 |
0.010122 |
191 -- 218 |
37 -- 58 |
beta N-acetyl-glucosaminidase |
|
_____________190__________________________219\n_____________|____________________________|\n5'-AUU...AAUAA___G_________GGUCC__________GAUGU...CGC-3'\n______________GGA_AGCAGUGUG_____AGUAAUGUUG\n______________|||_||||:||||_____||:|||||:|\n______________CCU_UCGUUACAC_____UCGUUACAGC\n3'-UUU...UAUGA____________________________ACGAA...GCG-5'\n_____________|____________________________|\n_____________59___________________________36\n |
212 -- 218 |
37 -- 43 |
-27.3301 kcal/mol |
6.56806 kcal/mol |
3.22699 kcal/mol |
190 219@LB@ | |@LB@5'-AUU...AAUAA G GGUCC GAUGU...CGC-3'@LB@ GGA AGCAGUGUG AGUAAUGUUG@LB@ ||| ||||:|||| ||:|||||:|@LB@ CCU UCGUUACAC UCGUUACAGC@LB@3'-UUU...UAUGA ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -27.3301 kcal/mol@LB@Unfolding Energy - mRNA 6.56806 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 5 |
0.0002772 |
0.1521 |
b3365 |
nirB |
-15.55 |
0.022306 |
192 -- 212 |
38 -- 57 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________191___________________213\n_____________|_____________________|\n5'-AUC...AAAUC_______AAA_______A___AGACU...UUA-3'\n______________GAGGCAA___UGAGCAA_GUC\n______________||:||||___|||||||_|||\n______________CUUCGUU___ACUCGUU_CAG\n3'-UUU...AUGAC_______AC________A___CACGA...GCG-5'\n_____________|_____________________|\n_____________58____________________37\n |
202 -- 208 |
42 -- 48 |
-22.0527 kcal/mol |
3.28811 kcal/mol |
3.2161 kcal/mol |
191 213@LB@ | |@LB@5'-AUC...AAAUC AAA A AGACU...UUA-3'@LB@ GAGGCAA UGAGCAA GUC@LB@ ||:|||| ||||||| |||@LB@ CUUCGUU ACUCGUU CAG@LB@3'-UUU...AUGAC AC A CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -22.0527 kcal/mol@LB@Unfolding Energy - mRNA 3.28811 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 6 |
0.0003052 |
0.1521 |
b4255 |
rraB |
-18.72 |
0.006315 |
136 -- 158 |
39 -- 61 |
protein inhibitor of RNase E |
|
_____________135_____________________159\n_____________|_______________________|\n5'-GAG...ACAAA_G____________C________GUGAC...CCA-3'\n______________G_UGGAGGCAAUGU_AGUGGUGU\n______________:_||||:|||||||_||:::|||\n______________U_ACCUUCGUUACA_UCGUUACA\n3'-UUU...CAUUA_G____________C________GCACG...GCG-5'\n_____________|_______________________|\n_____________62______________________38\n |
152 -- 158 |
39 -- 45 |
-27.5113 kcal/mol |
5.49395 kcal/mol |
3.30099 kcal/mol |
135 159@LB@ | |@LB@5'-GAG...ACAAA G C GUGAC...CCA-3'@LB@ G UGGAGGCAAUGU AGUGGUGU@LB@ : ||||:||||||| ||:::|||@LB@ U ACCUUCGUUACA UCGUUACA@LB@3'-UUU...CAUUA G C GCACG...GCG-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -27.5113 kcal/mol@LB@Unfolding Energy - mRNA 5.49395 kcal/mol@LB@Unfolding Energy - sRNA 3.30099 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 7 |
0.0003168 |
0.1521 |
b0894 |
dmsA |
-18.01 |
0.008378 |
163 -- 184 |
42 -- 62 |
dimethyl sulfoxide reductase anaerobic subunit A |
b1588 b1587 |
_____________162____________________185\n_____________|______________________|\n5'-CUU...UUUGU________U____C________GCUUG...GCG-3'\n______________UACUGGAA_CAAU_GUGAGCAA\n______________||||||||_||||_||||||||\n______________AUGACCUU_GUUA_CACUCGUU\n3'-UUU...UCAUU________C_____________ACAGC...GCG-5'\n_____________|______________________|\n_____________63_____________________41\n |
178 -- 184 |
42 -- 48 |
-26.0413 kcal/mol |
4.73109 kcal/mol |
3.30151 kcal/mol |
162 185@LB@ | |@LB@5'-CUU...UUUGU U C GCUUG...GCG-3'@LB@ UACUGGAA CAAU GUGAGCAA@LB@ |||||||| |||| ||||||||@LB@ AUGACCUU GUUA CACUCGUU@LB@3'-UUU...UCAUU C ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -18.01 kcal/mol@LB@Hybridization Energy -26.0413 kcal/mol@LB@Unfolding Energy - mRNA 4.73109 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 163 -- 184@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 8 |
0.0004259 |
0.161 |
b4019 |
metH |
-17.34 |
0.010954 |
191 -- 208 |
42 -- 58 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________190________________209\n_____________|__________________|\n5'-UGA...GUGUC______A___________CAAAG...ACG-3'\n______________GGGAGC_AGUGUGAGCAG\n______________||:|||_|:||||||||:\n______________CCUUCG_UUACACUCGUU\n3'-UUU...UAUGA__________________ACAGC...GCG-5'\n_____________|__________________|\n_____________59_________________41\n |
202 -- 208 |
42 -- 48 |
-25.1819 kcal/mol |
4.63502 kcal/mol |
3.2101 kcal/mol |
190 209@LB@ | |@LB@5'-UGA...GUGUC A CAAAG...ACG-3'@LB@ GGGAGC AGUGUGAGCAG@LB@ ||:||| |:||||||||:@LB@ CCUUCG UUACACUCGUU@LB@3'-UUU...UAUGA ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -17.34 kcal/mol@LB@Hybridization Energy -25.1819 kcal/mol@LB@Unfolding Energy - mRNA 4.63502 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 191 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 9 |
0.0004314 |
0.161 |
b1647 |
ydhF |
-17.39 |
0.010703 |
25 -- 48 |
37 -- 61 |
putative oxidoreductase |
|
_____________24________________________49\n_____________|_________________________|\n5'-UUC...UUUUA___________AA_________G__AAAAA...AGC-3'\n______________ACUGGAA_UAA__UGAGCGAUG_CG\n______________|||||||_:||__|||||:|||_||\n______________UGACCUU_GUU__ACUCGUUAC_GC\n3'-UUU...CAUUA_______C___AC_________A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
39 -- 45 |
40 -- 46 |
-25.2966 kcal/mol |
4.60014 kcal/mol |
3.30158 kcal/mol |
24 49@LB@ | |@LB@5'-UUC...UUUUA AA G AAAAA...AGC-3'@LB@ ACUGGAA UAA UGAGCGAUG CG@LB@ ||||||| :|| |||||:||| ||@LB@ UGACCUU GUU ACUCGUUAC GC@LB@3'-UUU...CAUUA C AC A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -25.2966 kcal/mol@LB@Unfolding Energy - mRNA 4.60014 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 10 |
0.0006218 |
0.2043 |
b1423 |
ydcJ |
-15.65 |
0.021404 |
209 -- 256 |
38 -- 84 |
putative metalloenzyme |
|
_____________208__________________________________________________257\n_____________|____________________________________________________|\n5'-GAA...GCGAA_______A_______A____AUUCG___________UUUC_CA_________AGCCA...UGG-3'\n______________CAGCAUC_CGGC_GG_UGAG_______GGAA_CAGU____G__GGCAAUGUC\n______________|||||:|_||||_||_|:||_______||||_||:|____|__:||||||||\n______________GUCGUGG_GCCG_CC_AUUC_______CCUU_GUUA____C__UCGUUACAG\n_____3'-UUUUCG____________A__G____AUUAUGA____C_________AC_________CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________85___________________________________________________37\n |
250 -- 256 |
38 -- 44 |
-41.5422 kcal/mol |
10.9926 kcal/mol |
14.897 kcal/mol |
208 257@LB@ | |@LB@5'-GAA...GCGAA A A AUUCG UUUC CA AGCCA...UGG-3'@LB@ CAGCAUC CGGC GG UGAG GGAA CAGU G GGCAAUGUC@LB@ |||||:| |||| || |:|| |||| ||:| | :||||||||@LB@ GUCGUGG GCCG CC AUUC CCUU GUUA C UCGUUACAG@LB@ 3'-UUUUCG A G AUUAUGA C AC CACGA...GCG-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -41.5422 kcal/mol@LB@Unfolding Energy - mRNA 10.9926 kcal/mol@LB@Unfolding Energy - sRNA 14.897 kcal/mol@LB@@LB@Position - mRNA 209 -- 256@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 38 -- 44@LB@ |
