| 1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 14 |
0.0009144 |
0.2195 |
b0181 |
lpxA |
-19.56 |
0.004514 |
124 -- 202 |
1 -- 90 |
UDP-N-acetylglucosamine acetyltransferase |
|
_____________123_____________________________________________________________________________________________203\n_____________|_______________________________________________________________________________________________|\n5'-CGG...UUUUA_____G_U_________CGA____A___________C_______C_________________CG___________G_______________A___GAUUG...GAC-3'\n______________AAGGG_U_GC_UCUGGU___UGGU_AAGUAGU_UUG_GAAGCAA___GA_UGAUGU_GUGCU__UAG_____CCG_GAGG_____CCUGAU_CGU\n______________||::|_:_||_:|:||:___|||:_|||||:|_:||_|||||||___||_::||||_|||||__:||_____|||_||||_____||||||_||:\n______________UUUUC_G_CG_GGGCCG___ACCG_UUCAUUA_GAC_CUUCGUU___CU_GUUACA_CACGA__GUC_____GGC_CUCC_____GGACUA_GCG\n___________3'-_____G_U__U_____________A_______U___________ACA__C______G_____AA___CAAGA___G____CAGAA__________-5'\n______________|_____________________________________________________________________________________________|\n______________90____________________________________________________________________________________________1\n |
159 -- 165 |
51 -- 57 |
-68.8911 kcal/mol |
23.6052 kcal/mol |
25.7298 kcal/mol |
123 203@LB@ | |@LB@5'-CGG...UUUUA G U CGA A C C CG G A GAUUG...GAC-3'@LB@ AAGGG U GC UCUGGU UGGU AAGUAGU UUG GAAGCAA GA UGAUGU GUGCU UAG CCG GAGG CCUGAU CGU@LB@ ||::| : || :|:||: |||: |||||:| :|| ||||||| || ::|||| ||||| :|| ||| |||| |||||| ||:@LB@ UUUUC G CG GGGCCG ACCG UUCAUUA GAC CUUCGUU CU GUUACA CACGA GUC GGC CUCC GGACUA GCG@LB@ 3'- G U U A U ACA C G AA CAAGA G CAGAA -5'@LB@ | |@LB@ 90 1@LB@@LB@@LB@Energy -19.56 kcal/mol@LB@Hybridization Energy -68.8911 kcal/mol@LB@Unfolding Energy - mRNA 23.6052 kcal/mol@LB@Unfolding Energy - sRNA 25.7298 kcal/mol@LB@@LB@Position - mRNA 124 -- 202@LB@Position - sRNA 1 -- 90@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 33 |
0.003005 |
0.2776 |
b0698 |
kdpA |
-12.81 |
0.065301 |
205 -- 229 |
1 -- 24 |
potassium translocating ATPase subunit A |
|
_____________204_______________________230\n_____________|_________________________|\n5'-GCU...GAUGG__G___A____U___UA________CACGU...ACA-3'\n______________CU_CGC_AGGG_UCU__CUGAUCGC\n______________||_|||_||||_|||__||||||||\n______________GA_GCG_UCCC_AGA__GACUAGCG\n3'-UUU...UCCAA__G___C________AG________-5'\n_____________|________________________|\n_____________25_______________________1\n |
223 -- 229 |
1 -- 7 |
-32.8008 kcal/mol |
12.2882 kcal/mol |
7.69932 kcal/mol |
204 230@LB@ | |@LB@5'-GCU...GAUGG G A U UA CACGU...ACA-3'@LB@ CU CGC AGGG UCU CUGAUCGC@LB@ || ||| |||| ||| ||||||||@LB@ GA GCG UCCC AGA GACUAGCG@LB@3'-UUU...UCCAA G C AG -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -32.8008 kcal/mol@LB@Unfolding Energy - mRNA 12.2882 kcal/mol@LB@Unfolding Energy - sRNA 7.69932 kcal/mol@LB@@LB@Position - mRNA 205 -- 229@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 57 |
0.005292 |
0.2905 |
b0077 |
ilvI |
-12.73 |
0.067491 |
188 -- 240 |
1 -- 67 |
acetolactate synthase 3 large subunit |
|
_____________187__________________________________________________________________241\n_____________|____________________________________________________________________|\n5'-AAA...CAAAC___________C____C_________________________AG_____A__U____G__________UUAUC...UUU-3'\n______________AGUGA____GG_AGGC_AUG_GAG__AUGUUGU_CU____GG____CCG_GA_GGUC_UCC_GAUCGC\n______________|||:|____||_|:||_|||_|||__||||:||_||____||____|||_||_||||_|||_||||||\n______________UCAUU____CC_UUCG_UAC_CUC__UACAGCA_GA____CC____GGC_CU_CCAG_AGG_CUAGCG\n3'-UUU...CCGAU_____AUGA_______U___A___GU_______C__AAGU__AAGA___G__C____A___A______-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
207 -- 213 |
36 -- 42 |
-47.8903 kcal/mol |
21.0378 kcal/mol |
14.1245 kcal/mol |
187 241@LB@ | |@LB@5'-AAA...CAAAC C C AG A U G UUAUC...UUU-3'@LB@ AGUGA GG AGGC AUG GAG AUGUUGU CU GG CCG GA GGUC UCC GAUCGC@LB@ |||:| || |:|| ||| ||| ||||:|| || || ||| || |||| ||| ||||||@LB@ UCAUU CC UUCG UAC CUC UACAGCA GA CC GGC CU CCAG AGG CUAGCG@LB@3'-UUU...CCGAU AUGA U A GU C AAGU AAGA G C A A -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -47.8903 kcal/mol@LB@Unfolding Energy - mRNA 21.0378 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 79 |
0.007454 |
0.3134 |
b1912 |
pgsA |
-16.66 |
0.014365 |
232 -- 294 |
1 -- 48 |
phosphatidylglycerophosphate synthetase |
|
_____________231_____________________________________________________________295\n_____________|_______________________________________________________________|\n5'-GUC...UACAC__UU_C_____AUC___A__CCA________AUU______UUAUCUGCCUGUCA_________CGUUUG-3'\n______________UG__C_GUGUC___CUU_UC___UUCUUUGU___GGUCUU______________CCUGGUCGC\n______________||__|_:||||___|||_||___||||::|:___||||||______________||||:||||\n______________AC__G_UACAG___GAA_AG___AAGAGGCG___CCAGAA______________GGACUAGCG\n3'-UUU...GUUAC__UC_U_____CAC______UCC________CUC_____________________________-5'\n_____________|______________________________________________________________|\n_____________49_____________________________________________________________1\n |
288 -- 294 |
1 -- 7 |
-35.4585 kcal/mol |
5.43289 kcal/mol |
13.3693 kcal/mol |
231 295@LB@ | |@LB@5'-GUC...UACAC UU C AUC A CCA AUU UUAUCUGCCUGUCA CGUUUG-3'@LB@ UG C GUGUC CUU UC UUCUUUGU GGUCUU CCUGGUCGC@LB@ || | :|||| ||| || ||||::|: |||||| ||||:||||@LB@ AC G UACAG GAA AG AAGAGGCG CCAGAA GGACUAGCG@LB@3'-UUU...GUUAC UC U CAC UCC CUC -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -35.4585 kcal/mol@LB@Unfolding Energy - mRNA 5.43289 kcal/mol@LB@Unfolding Energy - sRNA 13.3693 kcal/mol@LB@@LB@Position - mRNA 232 -- 294@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 98 |
0.01017 |
0.3393 |
b1234 |
rssA |
-9.29 |
0.241768 |
243 -- 258 |
1 -- 20 |
putative patatin-like family phospholipase |
|
_____________242___________________259\n_____________|_____________________|\n5'-GAU...GCGCG_____A_______________AUAUU...AAA-3'\n______________GCGAG_GGU_____UGGUCGC\n______________|||||_|||_____||:||||\n______________CGCUC_CCA_____ACUAGCG\n3'-UUU...AGAGG_________GAAGG_______-5'\n_____________|____________________|\n_____________21___________________1\n |
252 -- 258 |
1 -- 7 |
-21.3571 kcal/mol |
5.88093 kcal/mol |
6.18231 kcal/mol |
242 259@LB@ | |@LB@5'-GAU...GCGCG A AUAUU...AAA-3'@LB@ GCGAG GGU UGGUCGC@LB@ ||||| ||| ||:||||@LB@ CGCUC CCA ACUAGCG@LB@3'-UUU...AGAGG GAAGG -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -21.3571 kcal/mol@LB@Unfolding Energy - mRNA 5.88093 kcal/mol@LB@Unfolding Energy - sRNA 6.18231 kcal/mol@LB@@LB@Position - mRNA 243 -- 258@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 105 |
0.01075 |
0.3439 |
b2457 |
eutM |
-13.65 |
0.047053 |
202 -- 241 |
1 -- 59 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________201__________________________________________________________242\n_____________|____________________________________________________________|\n5'-UAU...CACAA________UU_____G____A___AAA_________________________________ACUGA...UUA-3'\n______________UGGAAGCA_____AG_AAUG_UCG______________CC_CGGGG_____CCUGGUUGC\n______________||||||||_____||_||||_|||______________||_||:||_____||||:|:||\n______________ACCUUCGU_____UC_UUAC_AGC______________GG_GCUCC_____GGACUAGCG\n3'-UUU...UUAUG________UACAC__G________ACGAAAGUCCAAGA__C_____CAGAA_________-5'\n_____________|___________________________________________________________|\n_____________60__________________________________________________________1\n |
235 -- 241 |
1 -- 7 |
-38.4359 kcal/mol |
10.6717 kcal/mol |
14.1095 kcal/mol |
201 242@LB@ | |@LB@5'-UAU...CACAA UU G A AAA ACUGA...UUA-3'@LB@ UGGAAGCA AG AAUG UCG CC CGGGG CCUGGUUGC@LB@ |||||||| || |||| ||| || ||:|| ||||:|:||@LB@ ACCUUCGU UC UUAC AGC GG GCUCC GGACUAGCG@LB@3'-UUU...UUAUG UACAC G ACGAAAGUCCAAGA C CAGAA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -38.4359 kcal/mol@LB@Unfolding Energy - mRNA 10.6717 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 202 -- 241@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 117 |
0.0126 |
0.3585 |
b2200 |
ccmB |
-15.87 |
0.019639 |
270 -- 292 |
1 -- 22 |
heme export ABC transporter permease |
|
_____________269_____________________293\n_____________|_______________________|\n5'-CGU...CCAAC____U_U__U_____________AAUUACCC-3'\n______________CCGC_G_GG_UCUUCCUGAUUGU\n______________||||_|_||_||||||||||:|:\n______________GGCG_C_CC_AGAAGGACUAGCG\n3'-UUU...CAAGA______U__C_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
286 -- 292 |
1 -- 7 |
-31.2771 kcal/mol |
7.85543 kcal/mol |
7.55214 kcal/mol |
269 293@LB@ | |@LB@5'-CGU...CCAAC U U U AAUUACCC-3'@LB@ CCGC G GG UCUUCCUGAUUGU@LB@ |||| | || ||||||||||:|:@LB@ GGCG C CC AGAAGGACUAGCG@LB@3'-UUU...CAAGA U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -31.2771 kcal/mol@LB@Unfolding Energy - mRNA 7.85543 kcal/mol@LB@Unfolding Energy - sRNA 7.55214 kcal/mol@LB@@LB@Position - mRNA 270 -- 292@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 121 |
0.01302 |
0.3615 |
b0966 |
hspQ |
-14.11 |
0.039362 |
113 -- 134 |
1 -- 23 |
heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein |
|
_____________112_____________________135\n_____________|_______________________|\n5'-AGA...CUAUA____AA_______G_________GUCAU...CUG-3'\n______________UCUG__AGGGUUU_CCUG_UCGC\n______________||:|__|||||:|_||||_||||\n______________AGGC__UCCCAGA_GGAC_AGCG\n3'-UUU...CCAAG____GC_______A____U____-5'\n_____________|______________________|\n_____________24_____________________1\n |
119 -- 125 |
11 -- 17 |
-28.2829 kcal/mol |
6.57487 kcal/mol |
7.59819 kcal/mol |
112 135@LB@ | |@LB@5'-AGA...CUAUA AA G GUCAU...CUG-3'@LB@ UCUG AGGGUUU CCUG UCGC@LB@ ||:| |||||:| |||| ||||@LB@ AGGC UCCCAGA GGAC AGCG@LB@3'-UUU...CCAAG GC A U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -28.2829 kcal/mol@LB@Unfolding Energy - mRNA 6.57487 kcal/mol@LB@Unfolding Energy - sRNA 7.59819 kcal/mol@LB@@LB@Position - mRNA 113 -- 134@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 11 -- 17@LB@ |
