| 7 |
0.0003168 |
0.1521 |
b0894 |
dmsA |
-18.01 |
0.008378 |
163 -- 184 |
42 -- 62 |
dimethyl sulfoxide reductase anaerobic subunit A |
b1588 b1587 |
_____________162____________________185\n_____________|______________________|\n5'-CUU...UUUGU________U____C________GCUUG...GCG-3'\n______________UACUGGAA_CAAU_GUGAGCAA\n______________||||||||_||||_||||||||\n______________AUGACCUU_GUUA_CACUCGUU\n3'-UUU...UCAUU________C_____________ACAGC...GCG-5'\n_____________|______________________|\n_____________63_____________________41\n |
178 -- 184 |
42 -- 48 |
-26.0413 kcal/mol |
4.73109 kcal/mol |
3.30151 kcal/mol |
162 185@LB@ | |@LB@5'-CUU...UUUGU U C GCUUG...GCG-3'@LB@ UACUGGAA CAAU GUGAGCAA@LB@ |||||||| |||| ||||||||@LB@ AUGACCUU GUUA CACUCGUU@LB@3'-UUU...UCAUU C ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -18.01 kcal/mol@LB@Hybridization Energy -26.0413 kcal/mol@LB@Unfolding Energy - mRNA 4.73109 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 163 -- 184@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 8 |
0.0004259 |
0.161 |
b4019 |
metH |
-17.34 |
0.010954 |
191 -- 208 |
42 -- 58 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________190________________209\n_____________|__________________|\n5'-UGA...GUGUC______A___________CAAAG...ACG-3'\n______________GGGAGC_AGUGUGAGCAG\n______________||:|||_|:||||||||:\n______________CCUUCG_UUACACUCGUU\n3'-UUU...UAUGA__________________ACAGC...GCG-5'\n_____________|__________________|\n_____________59_________________41\n |
202 -- 208 |
42 -- 48 |
-25.1819 kcal/mol |
4.63502 kcal/mol |
3.2101 kcal/mol |
190 209@LB@ | |@LB@5'-UGA...GUGUC A CAAAG...ACG-3'@LB@ GGGAGC AGUGUGAGCAG@LB@ ||:||| |:||||||||:@LB@ CCUUCG UUACACUCGUU@LB@3'-UUU...UAUGA ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -17.34 kcal/mol@LB@Hybridization Energy -25.1819 kcal/mol@LB@Unfolding Energy - mRNA 4.63502 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 191 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 18 |
0.001289 |
0.2406 |
b3930 |
menA |
-10.08 |
0.182848 |
73 -- 82 |
42 -- 51 |
1 4-dihydroxy-2-naphthoate octaprenyltransferase |
|
_____________72_________83\n_____________|__________|\n5'-AGC...AGAUU__________ACAUC...CGC-3'\n______________AUGUGAGCAA\n______________||||||||||\n______________UACACUCGUU\n3'-UUU...UUCGU__________ACAGC...GCG-5'\n_____________|__________|\n_____________52_________41\n |
76 -- 82 |
42 -- 48 |
-14.1762 kcal/mol |
2.92742 kcal/mol |
1.16834 kcal/mol |
72 83@LB@ | |@LB@5'-AGC...AGAUU ACAUC...CGC-3'@LB@ AUGUGAGCAA@LB@ ||||||||||@LB@ UACACUCGUU@LB@3'-UUU...UUCGU ACAGC...GCG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -14.1762 kcal/mol@LB@Unfolding Energy - mRNA 2.92742 kcal/mol@LB@Unfolding Energy - sRNA 1.16834 kcal/mol@LB@@LB@Position - mRNA 73 -- 82@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 48 |
0.004482 |
0.2905 |
b4045 |
yjbJ |
-14.69 |
0.031336 |
242 -- 268 |
42 -- 68 |
stress-induced protein UPF0337 family |
|
_____________241___________________________269\n_____________|_____________________________|\n5'-CGU...UUUAA________G__AAA_______________ACUGA...AAG-3'\n______________AGGUAA_A_UG___GAGCAAUG_GGGCAA\n______________|:||||_|_||___:|||||||_|:||||\n______________UUCAUU_U_AC___UUCGUUAC_CUCGUU\n3'-UUU...ACCGA______A_G__C__________A______ACAGC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________41\n |
256 -- 262 |
49 -- 55 |
-22.1594 kcal/mol |
4.16538 kcal/mol |
3.30492 kcal/mol |
241 269@LB@ | |@LB@5'-CGU...UUUAA G AAA ACUGA...AAG-3'@LB@ AGGUAA A UG GAGCAAUG GGGCAA@LB@ |:|||| | || :||||||| |:||||@LB@ UUCAUU U AC UUCGUUAC CUCGUU@LB@3'-UUU...ACCGA A G C A ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -22.1594 kcal/mol@LB@Unfolding Energy - mRNA 4.16538 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 242 -- 268@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 62 |
0.005609 |
0.2905 |
b1132 |
hflD |
-11.66 |
0.101792 |
188 -- 207 |
42 -- 58 |
putative lysogenization regulator |
|
_____________187___________________208\n_____________|_____________________|\n5'-ACC...AACAA_________GAAC________AGAAU...CCG-3'\n______________GGAAGCAGU____GUG_GCAA\n______________|||||||:|____|||_||||\n______________CCUUCGUUA____CAC_CGUU\n3'-UUU...UAUGA________________U____ACAGC...GCG-5'\n_____________|_____________________|\n_____________59____________________41\n |
190 -- 196 |
50 -- 56 |
-19.7521 kcal/mol |
4.88534 kcal/mol |
3.2101 kcal/mol |
187 208@LB@ | |@LB@5'-ACC...AACAA GAAC AGAAU...CCG-3'@LB@ GGAAGCAGU GUG GCAA@LB@ |||||||:| ||| ||||@LB@ CCUUCGUUA CAC CGUU@LB@3'-UUU...UAUGA U ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -19.7521 kcal/mol@LB@Unfolding Energy - mRNA 4.88534 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 188 -- 207@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 73 |
0.006758 |
0.3082 |
b0073 |
leuB |
-14.41 |
0.035044 |
252 -- 295 |
42 -- 89 |
3-isopropylmalate dehydrogenase NAD(+)-dependent |
|
_____________251_______________________________________________296\n_____________|_________________________________________________|\n5'-AAA...GUCCG_____G_UG____A__________A__________U__C_____C____CCGCU-3'\n______________GAAGU_A__ACCC_GGC__GCUGA__AGUGCUGGA_GC___GUG_GCAA\n______________:|||:_|__||||_|||__|||:|__|:|:|||||_||___|||_||||\n______________UUUCG_U__UGGG_CCG__CGAUU__UUAUGACCU_CG___CAC_CGUU\n__________3'-U_____G_CG________AC_____CA_________U__UUA___U____ACAGC...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________41\n |
277 -- 283 |
56 -- 62 |
-44.364 kcal/mol |
15.0484 kcal/mol |
14.9103 kcal/mol |
251 296@LB@ | |@LB@5'-AAA...GUCCG G UG A A U C C CCGCU-3'@LB@ GAAGU A ACCC GGC GCUGA AGUGCUGGA GC GUG GCAA@LB@ :|||: | |||| ||| |||:| |:|:||||| || ||| ||||@LB@ UUUCG U UGGG CCG CGAUU UUAUGACCU CG CAC CGUU@LB@ 3'-U G CG AC CA U UUA U ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -44.364 kcal/mol@LB@Unfolding Energy - mRNA 15.0484 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 252 -- 295@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 103 |
0.0104 |
0.3393 |
b2711 |
norW |
-11.75 |
0.098250 |
192 -- 208 |
42 -- 58 |
NADH:flavorubredoxin oxidoreductase |
|
_____________191_______________209\n_____________|_________________|\n5'-GAA...GCAUC________AA_______CGGCA...UUG-3'\n______________GGAGGCAA__UGAGUAA\n______________|||:||||__||||:||\n______________CCUUCGUU__ACUCGUU\n3'-UUU...UAUGA________AC_______ACAGC...GCG-5'\n_____________|_________________|\n_____________59________________41\n |
202 -- 208 |
42 -- 48 |
-20.2467 kcal/mol |
5.28663 kcal/mol |
3.2101 kcal/mol |
191 209@LB@ | |@LB@5'-GAA...GCAUC AA CGGCA...UUG-3'@LB@ GGAGGCAA UGAGUAA@LB@ |||:|||| ||||:||@LB@ CCUUCGUU ACUCGUU@LB@3'-UUU...UAUGA AC ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -20.2467 kcal/mol@LB@Unfolding Energy - mRNA 5.28663 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 145 |
0.01736 |
0.3998 |
b1607 |
ydgC |
-14.56 |
0.032924 |
216 -- 264 |
42 -- 89 |
GlpM family inner membrane protein |
|
_____________215__________________________________________________265\n_____________|____________________________________________________|\n5'-AUG...UAAUC________________GC______________UU__U_______UUU_____AAACG...CAC-3'\n______________AAAGCC_GCGCUCGGU__GCU_GGUAGUGCUG__GA__UGGUGU___AGCAA\n______________||||||_||:|:|||:__|||_:|||:|:|||__||__:::|||___|||||\n______________UUUCGG_CGUGGGCCG__CGA_UCAUUAUGAC__CU__GUUACA___UCGUU\n__________3'-U______U_________AC___U______________UC______C_______ACAGC...GCG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________41\n |
239 -- 245 |
58 -- 64 |
-48.2837 kcal/mol |
18.8097 kcal/mol |
14.9103 kcal/mol |
215 265@LB@ | |@LB@5'-AUG...UAAUC GC UU U UUU AAACG...CAC-3'@LB@ AAAGCC GCGCUCGGU GCU GGUAGUGCUG GA UGGUGU AGCAA@LB@ |||||| ||:|:|||: ||| :|||:|:||| || :::||| |||||@LB@ UUUCGG CGUGGGCCG CGA UCAUUAUGAC CU GUUACA UCGUU@LB@ 3'-U U AC U UC C ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -48.2837 kcal/mol@LB@Unfolding Energy - mRNA 18.8097 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 216 -- 264@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 58 -- 64@LB@ |
