| 3 |
2.244e-05 |
0.02513 |
b1107 |
nagZ |
-17.54 |
0.010122 |
191 -- 218 |
37 -- 58 |
beta N-acetyl-glucosaminidase |
|
_____________190__________________________219\n_____________|____________________________|\n5'-AUU...AAUAA___G_________GGUCC__________GAUGU...CGC-3'\n______________GGA_AGCAGUGUG_____AGUAAUGUUG\n______________|||_||||:||||_____||:|||||:|\n______________CCU_UCGUUACAC_____UCGUUACAGC\n3'-UUU...UAUGA____________________________ACGAA...GCG-5'\n_____________|____________________________|\n_____________59___________________________36\n |
212 -- 218 |
37 -- 43 |
-27.3301 kcal/mol |
6.56806 kcal/mol |
3.22699 kcal/mol |
190 219@LB@ | |@LB@5'-AUU...AAUAA G GGUCC GAUGU...CGC-3'@LB@ GGA AGCAGUGUG AGUAAUGUUG@LB@ ||| ||||:|||| ||:|||||:|@LB@ CCU UCGUUACAC UCGUUACAGC@LB@3'-UUU...UAUGA ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -27.3301 kcal/mol@LB@Unfolding Energy - mRNA 6.56806 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 9 |
0.0004314 |
0.161 |
b1647 |
ydhF |
-17.39 |
0.010703 |
25 -- 48 |
37 -- 61 |
putative oxidoreductase |
|
_____________24________________________49\n_____________|_________________________|\n5'-UUC...UUUUA___________AA_________G__AAAAA...AGC-3'\n______________ACUGGAA_UAA__UGAGCGAUG_CG\n______________|||||||_:||__|||||:|||_||\n______________UGACCUU_GUU__ACUCGUUAC_GC\n3'-UUU...CAUUA_______C___AC_________A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
39 -- 45 |
40 -- 46 |
-25.2966 kcal/mol |
4.60014 kcal/mol |
3.30158 kcal/mol |
24 49@LB@ | |@LB@5'-UUC...UUUUA AA G AAAAA...AGC-3'@LB@ ACUGGAA UAA UGAGCGAUG CG@LB@ ||||||| :|| |||||:||| ||@LB@ UGACCUU GUU ACUCGUUAC GC@LB@3'-UUU...CAUUA C AC A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -25.2966 kcal/mol@LB@Unfolding Energy - mRNA 4.60014 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 15 |
0.001024 |
0.2294 |
b2822 |
recC |
-16.38 |
0.016046 |
234 -- 264 |
37 -- 63 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________233______________________________265\n_____________|________________________________|\n5'-AGU...UGGAC___________GUU_________UUAU_____AACGC...AGA-3'\n______________GUGCUGGAAGC___GAUG_GAGU____UGUCG\n______________:|:||||||||___:|||_|||:____|||||\n______________UAUGACCUUCG___UUAC_CUCG____ACAGC\n3'-UUU...UUCAU__________________A____UU_______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
238 -- 244 |
53 -- 59 |
-30.8262 kcal/mol |
11.1454 kcal/mol |
3.30267 kcal/mol |
233 265@LB@ | |@LB@5'-AGU...UGGAC GUU UUAU AACGC...AGA-3'@LB@ GUGCUGGAAGC GAUG GAGU UGUCG@LB@ :|:|||||||| :||| |||: |||||@LB@ UAUGACCUUCG UUAC CUCG ACAGC@LB@3'-UUU...UUCAU A UU ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -30.8262 kcal/mol@LB@Unfolding Energy - mRNA 11.1454 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 234 -- 264@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 26 |
0.002118 |
0.2692 |
b1181 |
ycgN |
-20.05 |
0.003709 |
218 -- 269 |
37 -- 88 |
UPF0153 family cysteine cluster protein |
|
_____________217_____________________________________________________270\n_____________|_______________________________________________________|\n5'-UUU...CUGAU____G_U______UU_____A______AACC__________AA____________GAAUG...GUC-3'\n______________GAGC_A_GUACCU__CUGGC_AAGUAA____CUGGA__CGA__UGAGCGAUG_CG\n______________:|||_|_|:|||:__|||||_||||||____|||||__|:|__|||||:|||_||\n______________UUCG_U_CGUGGG__GACCG_UUCAUU____GACCU__GUU__ACUCGUUAC_GC\n_________3'-UU____G________CC_____A______AU_______UC___AC_________A__ACGAA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________36\n |
261 -- 267 |
40 -- 46 |
-50.5987 kcal/mol |
15.641 kcal/mol |
14.9108 kcal/mol |
217 270@LB@ | |@LB@5'-UUU...CUGAU G U UU A AACC AA GAAUG...GUC-3'@LB@ GAGC A GUACCU CUGGC AAGUAA CUGGA CGA UGAGCGAUG CG@LB@ :||| | |:|||: ||||| |||||| ||||| |:| |||||:||| ||@LB@ UUCG U CGUGGG GACCG UUCAUU GACCU GUU ACUCGUUAC GC@LB@ 3'-UU G CC A AU UC AC A ACGAA...GCG-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -20.05 kcal/mol@LB@Hybridization Energy -50.5987 kcal/mol@LB@Unfolding Energy - mRNA 15.641 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 218 -- 269@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 63 |
0.005616 |
0.2905 |
b3261 |
fis |
-12.93 |
0.062484 |
136 -- 161 |
37 -- 61 |
global DNA-binding transcriptional dual regulator |
|
_____________135________________________162\n_____________|__________________________|\n5'-GGA...GAACA__________U__GA____UACU___AAAAU...AGG-3'\n______________GCUGGAGGCG_UG__GGCA____UCG\n______________:|||||:||:_||__:|||____|||\n______________UGACCUUCGU_AC__UCGU____AGC\n3'-UUU...CAUUA__________U__AC____UAC____ACGAA...GCG-5'\n_____________|__________________________|\n_____________62_________________________36\n |
139 -- 145 |
52 -- 58 |
-26.9705 kcal/mol |
10.742 kcal/mol |
3.30158 kcal/mol |
135 162@LB@ | |@LB@5'-GGA...GAACA U GA UACU AAAAU...AGG-3'@LB@ GCUGGAGGCG UG GGCA UCG@LB@ :|||||:||: || :||| |||@LB@ UGACCUUCGU AC UCGU AGC@LB@3'-UUU...CAUUA U AC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -26.9705 kcal/mol@LB@Unfolding Energy - mRNA 10.742 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 136 -- 161@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 64 |
0.005632 |
0.2905 |
b3005 |
exbD |
-12.96 |
0.061586 |
76 -- 96 |
37 -- 56 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________75____________________97\n_____________|_____________________|\n5'-CGG...CUUUA________C____________CAGCG...UCU-3'\n______________AAGCGAUG_UGGGUGAUGUUG\n______________||||:|||_||:|::||||:|\n______________UUCGUUAC_ACUCGUUACAGC\n3'-UUU...UGACC_____________________ACGAA...GCG-5'\n_____________|_____________________|\n_____________57____________________36\n |
90 -- 96 |
37 -- 43 |
-25.0811 kcal/mol |
8.89195 kcal/mol |
3.22494 kcal/mol |
75 97@LB@ | |@LB@5'-CGG...CUUUA C CAGCG...UCU-3'@LB@ AAGCGAUG UGGGUGAUGUUG@LB@ ||||:||| ||:|::||||:|@LB@ UUCGUUAC ACUCGUUACAGC@LB@3'-UUU...UGACC ACGAA...GCG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 8.89195 kcal/mol@LB@Unfolding Energy - sRNA 3.22494 kcal/mol@LB@@LB@Position - mRNA 76 -- 96@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 80 |
0.007461 |
0.3134 |
b0925 |
ldtD |
-10.36 |
0.165445 |
187 -- 206 |
37 -- 61 |
murein L D-transpeptidase |
|
_____________186_______________________207\n_____________|_________________________|\n5'-AAG...UAAAA__A______________G_______CUUAA...CUG-3'\n______________AC_GGGGGCA_____AG_GAUGUUG\n______________||_||::|||_____||_:||||:|\n______________UG_CCUUCGU_____UC_UUACAGC\n3'-UUU...CAUUA__A_______UACAC__G_______ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
200 -- 206 |
37 -- 43 |
-19.2999 kcal/mol |
5.64293 kcal/mol |
3.30158 kcal/mol |
186 207@LB@ | |@LB@5'-AAG...UAAAA A G CUUAA...CUG-3'@LB@ AC GGGGGCA AG GAUGUUG@LB@ || ||::||| || :||||:|@LB@ UG CCUUCGU UC UUACAGC@LB@3'-UUU...CAUUA A UACAC G ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -19.2999 kcal/mol@LB@Unfolding Energy - mRNA 5.64293 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 84 |
0.008296 |
0.3318 |
b0892 |
rarA |
-13.69 |
0.046473 |
183 -- 215 |
37 -- 66 |
recombination intermediate processing DNA-dependent ATPase |
|
_____________182_________________________________216\n_____________|___________________________________|\n5'-CAA...UCAAC____GUA________CCUGA________UC_____CUCGA...AUU-3'\n______________GUAA_____GAGGCA_____GUGAGCAA__UGUCG\n______________||||_____||:|||_____||||||||__|||||\n______________CAUU_____CUUCGU_____CACUCGUU__ACAGC\n3'-UUU...CGAUU____AUGAC______UA__________________ACGAA...GCG-5'\n_____________|___________________________________|\n_____________67__________________________________36\n |
202 -- 208 |
42 -- 48 |
-25.9915 kcal/mol |
8.99953 kcal/mol |
3.30551 kcal/mol |
182 216@LB@ | |@LB@5'-CAA...UCAAC GUA CCUGA UC CUCGA...AUU-3'@LB@ GUAA GAGGCA GUGAGCAA UGUCG@LB@ |||| ||:||| |||||||| |||||@LB@ CAUU CUUCGU CACUCGUU ACAGC@LB@3'-UUU...CGAUU AUGAC UA ACGAA...GCG-5'@LB@ | |@LB@ 67 36@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -25.9915 kcal/mol@LB@Unfolding Energy - mRNA 8.99953 kcal/mol@LB@Unfolding Energy - sRNA 3.30551 kcal/mol@LB@@LB@Position - mRNA 183 -- 215@LB@Position - sRNA 37 -- 66@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 85 |
0.008408 |
0.3323 |
b1246 |
oppD |
-9.75 |
0.205761 |
38 -- 64 |
37 -- 61 |
oligopeptide ABC transporter ATPase |
|
_____________37__________________________65\n_____________|___________________________|\n5'-AGC...AAGCA_______U___U__C_________G__CGAAC...ACG-3'\n______________GCUGGGG_GCA_UG_UGAGUGAUG_CG\n______________:||||::_|||_||_||||::|||_||\n______________UGACCUU_CGU_AC_ACUCGUUAC_GC\n3'-UUU...CAUUA___________U____________A__ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
55 -- 61 |
40 -- 46 |
-27.1525 kcal/mol |
14.0993 kcal/mol |
3.30158 kcal/mol |
37 65@LB@ | |@LB@5'-AGC...AAGCA U U C G CGAAC...ACG-3'@LB@ GCUGGGG GCA UG UGAGUGAUG CG@LB@ :||||:: ||| || ||||::||| ||@LB@ UGACCUU CGU AC ACUCGUUAC GC@LB@3'-UUU...CAUUA U A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -27.1525 kcal/mol@LB@Unfolding Energy - mRNA 14.0993 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 38 -- 64@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 90 |
0.009279 |
0.3393 |
b0817 |
mntR |
-11.60 |
0.104050 |
186 -- 211 |
37 -- 65 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________185___________________________212\n_____________|_____________________________|\n5'-CUU...CACCA_____A________CAA_____C______CGCAG...AUC-3'\n______________UAAUG__GGAAGCA___UGAGU___GUCG\n______________||||:__|||||||___||||:___||||\n______________AUUAU__CCUUCGU___ACUCG___CAGC\n3'-UUU...GAUUC_____GA_______UAC_____UUA____ACGAA...GCG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
192 -- 198 |
52 -- 58 |
-22.6144 kcal/mol |
7.71005 kcal/mol |
3.30549 kcal/mol |
185 212@LB@ | |@LB@5'-CUU...CACCA A CAA C CGCAG...AUC-3'@LB@ UAAUG GGAAGCA UGAGU GUCG@LB@ ||||: ||||||| ||||: ||||@LB@ AUUAU CCUUCGU ACUCG CAGC@LB@3'-UUU...GAUUC GA UAC UUA ACGAA...GCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -22.6144 kcal/mol@LB@Unfolding Energy - mRNA 7.71005 kcal/mol@LB@Unfolding Energy - sRNA 3.30549 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
