| 1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
1.064e-05 |
0.01787 |
b1683 |
sufB |
-21.37 |
0.002185 |
208 -- 233 |
38 -- 66 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________207___________________________234\n_____________|_____________________________|\n5'-GUU...GUCUC________________C____________AAAAC...AGC-3'\n______________GUAAUACU_GAAGCAA__UGA_CGAUGUC\n______________||||||||_|||||||__|||_|:|||||\n______________CAUUAUGA_CUUCGUU__ACU_GUUACAG\n3'-UUU...CGAUU________C_______AC___C_______CACGA...GCG-5'\n_____________|_____________________________|\n_____________67____________________________37\n |
227 -- 233 |
38 -- 44 |
-29.4313 kcal/mol |
4.7571 kcal/mol |
3.30527 kcal/mol |
207 234@LB@ | |@LB@5'-GUU...GUCUC C AAAAC...AGC-3'@LB@ GUAAUACU GAAGCAA UGA CGAUGUC@LB@ |||||||| ||||||| ||| |:|||||@LB@ CAUUAUGA CUUCGUU ACU GUUACAG@LB@3'-UUU...CGAUU C AC C CACGA...GCG-5'@LB@ | |@LB@ 67 37@LB@@LB@@LB@Energy -21.37 kcal/mol@LB@Hybridization Energy -29.4313 kcal/mol@LB@Unfolding Energy - mRNA 4.7571 kcal/mol@LB@Unfolding Energy - sRNA 3.30527 kcal/mol@LB@@LB@Position - mRNA 208 -- 233@LB@Position - sRNA 38 -- 66@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 26 |
0.002118 |
0.2692 |
b1181 |
ycgN |
-20.05 |
0.003709 |
218 -- 269 |
37 -- 88 |
UPF0153 family cysteine cluster protein |
|
_____________217_____________________________________________________270\n_____________|_______________________________________________________|\n5'-UUU...CUGAU____G_U______UU_____A______AACC__________AA____________GAAUG...GUC-3'\n______________GAGC_A_GUACCU__CUGGC_AAGUAA____CUGGA__CGA__UGAGCGAUG_CG\n______________:|||_|_|:|||:__|||||_||||||____|||||__|:|__|||||:|||_||\n______________UUCG_U_CGUGGG__GACCG_UUCAUU____GACCU__GUU__ACUCGUUAC_GC\n_________3'-UU____G________CC_____A______AU_______UC___AC_________A__ACGAA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________36\n |
261 -- 267 |
40 -- 46 |
-50.5987 kcal/mol |
15.641 kcal/mol |
14.9108 kcal/mol |
217 270@LB@ | |@LB@5'-UUU...CUGAU G U UU A AACC AA GAAUG...GUC-3'@LB@ GAGC A GUACCU CUGGC AAGUAA CUGGA CGA UGAGCGAUG CG@LB@ :||| | |:|||: ||||| |||||| ||||| |:| |||||:||| ||@LB@ UUCG U CGUGGG GACCG UUCAUU GACCU GUU ACUCGUUAC GC@LB@ 3'-UU G CC A AU UC AC A ACGAA...GCG-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -20.05 kcal/mol@LB@Hybridization Energy -50.5987 kcal/mol@LB@Unfolding Energy - mRNA 15.641 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 218 -- 269@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 14 |
0.0009144 |
0.2195 |
b0181 |
lpxA |
-19.56 |
0.004514 |
124 -- 202 |
1 -- 90 |
UDP-N-acetylglucosamine acetyltransferase |
|
_____________123_____________________________________________________________________________________________203\n_____________|_______________________________________________________________________________________________|\n5'-CGG...UUUUA_____G_U_________CGA____A___________C_______C_________________CG___________G_______________A___GAUUG...GAC-3'\n______________AAGGG_U_GC_UCUGGU___UGGU_AAGUAGU_UUG_GAAGCAA___GA_UGAUGU_GUGCU__UAG_____CCG_GAGG_____CCUGAU_CGU\n______________||::|_:_||_:|:||:___|||:_|||||:|_:||_|||||||___||_::||||_|||||__:||_____|||_||||_____||||||_||:\n______________UUUUC_G_CG_GGGCCG___ACCG_UUCAUUA_GAC_CUUCGUU___CU_GUUACA_CACGA__GUC_____GGC_CUCC_____GGACUA_GCG\n___________3'-_____G_U__U_____________A_______U___________ACA__C______G_____AA___CAAGA___G____CAGAA__________-5'\n______________|_____________________________________________________________________________________________|\n______________90____________________________________________________________________________________________1\n |
159 -- 165 |
51 -- 57 |
-68.8911 kcal/mol |
23.6052 kcal/mol |
25.7298 kcal/mol |
123 203@LB@ | |@LB@5'-CGG...UUUUA G U CGA A C C CG G A GAUUG...GAC-3'@LB@ AAGGG U GC UCUGGU UGGU AAGUAGU UUG GAAGCAA GA UGAUGU GUGCU UAG CCG GAGG CCUGAU CGU@LB@ ||::| : || :|:||: |||: |||||:| :|| ||||||| || ::|||| ||||| :|| ||| |||| |||||| ||:@LB@ UUUUC G CG GGGCCG ACCG UUCAUUA GAC CUUCGUU CU GUUACA CACGA GUC GGC CUCC GGACUA GCG@LB@ 3'- G U U A U ACA C G AA CAAGA G CAGAA -5'@LB@ | |@LB@ 90 1@LB@@LB@@LB@Energy -19.56 kcal/mol@LB@Hybridization Energy -68.8911 kcal/mol@LB@Unfolding Energy - mRNA 23.6052 kcal/mol@LB@Unfolding Energy - sRNA 25.7298 kcal/mol@LB@@LB@Position - mRNA 124 -- 202@LB@Position - sRNA 1 -- 90@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 37 |
0.003144 |
0.2776 |
b3743 |
asnC |
-18.99 |
0.005660 |
240 -- 261 |
40 -- 60 |
transcriptional activator of asnA; autorepressor |
|
_____________239____________________262\n_____________|______________________|\n5'-AUU...GCAUC_________UUAA_________CGCGC...GCG-3'\n______________CUGGAAGCA____UGGGCAAUG\n______________|||||||||____||:||||||\n______________GACCUUCGU____ACUCGUUAC\n3'-UUU...AUUAU_________UAC__________AGCAC...GCG-5'\n_____________|______________________|\n_____________61_____________________39\n |
255 -- 261 |
40 -- 46 |
-27.3577 kcal/mol |
5.06736 kcal/mol |
3.29985 kcal/mol |
239 262@LB@ | |@LB@5'-AUU...GCAUC UUAA CGCGC...GCG-3'@LB@ CUGGAAGCA UGGGCAAUG@LB@ ||||||||| ||:||||||@LB@ GACCUUCGU ACUCGUUAC@LB@3'-UUU...AUUAU UAC AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -27.3577 kcal/mol@LB@Unfolding Energy - mRNA 5.06736 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 36 |
0.00312 |
0.2776 |
b1418 |
cybB |
-18.82 |
0.006053 |
229 -- 299 |
21 -- 85 |
cytochrome b561 |
|
_____________228__________________________________________________________________________300\n_____________|____________________________________________________________________________|\n5'-AAC...ACAAA_______UCA_________CUUUU________UUAUC____C__AUU_C______GA_________U__U______C-3'\n______________UCAGCAU___CUGGCUGGU_______UACUGG_____GCAG_GU___G_GCAAUG__GU___UUCG_GG_UUCUUC\n______________:|||||:___|:||||||:_______||||||_____|||:_||___|_||||||__||___|||:_||_||||:|\n______________GGUCGUG___GGCCGACCG_______AUGACC_____CGUU_CA___C_CGUUAC__CA___AAGU_CC_AAGAGG\n______3'-UUUUC___________________AUUCAUU______UU_______A______U______AG__CGA______________CGCUC...GCG-5'\n_____________|____________________________________________________________________________|\n_____________86___________________________________________________________________________20\n |
241 -- 247 |
70 -- 76 |
-54.3818 kcal/mol |
15.9593 kcal/mol |
19.6 kcal/mol |
228 300@LB@ | |@LB@5'-AAC...ACAAA UCA CUUUU UUAUC C AUU C GA U U C-3'@LB@ UCAGCAU CUGGCUGGU UACUGG GCAG GU G GCAAUG GU UUCG GG UUCUUC@LB@ :|||||: |:||||||: |||||| |||: || | |||||| || |||: || ||||:|@LB@ GGUCGUG GGCCGACCG AUGACC CGUU CA C CGUUAC CA AAGU CC AAGAGG@LB@ 3'-UUUUC AUUCAUU UU A U AG CGA CGCUC...GCG-5'@LB@ | |@LB@ 86 20@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -54.3818 kcal/mol@LB@Unfolding Energy - mRNA 15.9593 kcal/mol@LB@Unfolding Energy - sRNA 19.6 kcal/mol@LB@@LB@Position - mRNA 229 -- 299@LB@Position - sRNA 21 -- 85@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 6 |
0.0003052 |
0.1521 |
b4255 |
rraB |
-18.72 |
0.006315 |
136 -- 158 |
39 -- 61 |
protein inhibitor of RNase E |
|
_____________135_____________________159\n_____________|_______________________|\n5'-GAG...ACAAA_G____________C________GUGAC...CCA-3'\n______________G_UGGAGGCAAUGU_AGUGGUGU\n______________:_||||:|||||||_||:::|||\n______________U_ACCUUCGUUACA_UCGUUACA\n3'-UUU...CAUUA_G____________C________GCACG...GCG-5'\n_____________|_______________________|\n_____________62______________________38\n |
152 -- 158 |
39 -- 45 |
-27.5113 kcal/mol |
5.49395 kcal/mol |
3.30099 kcal/mol |
135 159@LB@ | |@LB@5'-GAG...ACAAA G C GUGAC...CCA-3'@LB@ G UGGAGGCAAUGU AGUGGUGU@LB@ : ||||:||||||| ||:::|||@LB@ U ACCUUCGUUACA UCGUUACA@LB@3'-UUU...CAUUA G C GCACG...GCG-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -27.5113 kcal/mol@LB@Unfolding Energy - mRNA 5.49395 kcal/mol@LB@Unfolding Energy - sRNA 3.30099 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 31 |
0.002952 |
0.2776 |
b3052 |
hldE |
-18.29 |
0.007494 |
235 -- 261 |
44 -- 68 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________234_________________________262\n_____________|___________________________|\n5'-GCG...UGCAG________G___UU__________U__UGGAU...CGC-3'\n______________GAGUGAUG_UGG__GGUGAUGUGA_GC\n______________:|||:||:_|||__:|::||||||_||\n______________UUCAUUAU_ACC__UCGUUACACU_CG\n3'-UUU...ACCGA________G___U______________UUACA...GCG-5'\n_____________|___________________________|\n_____________69__________________________43\n |
252 -- 258 |
46 -- 52 |
-27.5603 kcal/mol |
5.96824 kcal/mol |
3.30414 kcal/mol |
234 262@LB@ | |@LB@5'-GCG...UGCAG G UU U UGGAU...CGC-3'@LB@ GAGUGAUG UGG GGUGAUGUGA GC@LB@ :|||:||: ||| :|::|||||| ||@LB@ UUCAUUAU ACC UCGUUACACU CG@LB@3'-UUU...ACCGA G U UUACA...GCG-5'@LB@ | |@LB@ 69 43@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -27.5603 kcal/mol@LB@Unfolding Energy - mRNA 5.96824 kcal/mol@LB@Unfolding Energy - sRNA 3.30414 kcal/mol@LB@@LB@Position - mRNA 235 -- 261@LB@Position - sRNA 44 -- 68@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 46 -- 52@LB@ |
