| 123 |
0.0134 |
0.3627 |
b3774 |
ilvC |
-11.90 |
0.092739 |
9 -- 41 |
1 -- 25 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________8__________________________________42\n_____________|__________________________________|\n___5'-AUGGCGGC_______CAGAUGCAG__A_______A_______GUAAA...GCU-3'\n______________UUUCCGC_________GA_GGUUUUC__GAUCGC\n______________|:|||||_________||_|||:|||__||||||\n______________AGAGGCG_________CU_CCAGAAG__CUAGCG\n3'-UUU...GUCCA__________________C_______GA______-5'\n_____________|_________________________________|\n_____________26________________________________1\n |
28 -- 34 |
9 -- 15 |
-28.1375 kcal/mol |
8.51703 kcal/mol |
7.71912 kcal/mol |
8 42@LB@ | |@LB@ 5'-AUGGCGGC CAGAUGCAG A A GUAAA...GCU-3'@LB@ UUUCCGC GA GGUUUUC GAUCGC@LB@ |:||||| || |||:||| ||||||@LB@ AGAGGCG CU CCAGAAG CUAGCG@LB@3'-UUU...GUCCA C GA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -28.1375 kcal/mol@LB@Unfolding Energy - mRNA 8.51703 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 9 -- 41@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 150 |
0.01825 |
0.4072 |
b3255 |
accB |
-12.43 |
0.075652 |
231 -- 278 |
1 -- 47 |
acetyl CoA carboxylase BCCP subunit |
|
_____________230_______________________________________________279\n_____________|_________________________________________________|\n5'-UUU...UGAUC____UG_____AAGAA_____CA______AACU__AAA_______AG__GAAGA...GCC-3'\n______________GAGC___GUUG_____UCAGG__UCUCCG____GG___UUUCUGA__GC\n______________||||___||:|_____|||||__||||||____||___||:||||__||\n______________CUCG___CAGC_____AGUCC__AGAGGC____CC___AAGGACU__CG\n3'-UUU...UUACA____UUA____ACGAA_____A_______GCU___CAG_______AG__-5'\n_____________|________________________________________________|\n_____________48_______________________________________________1\n |
268 -- 274 |
5 -- 11 |
-38.2829 kcal/mol |
12.4901 kcal/mol |
13.3604 kcal/mol |
230 279@LB@ | |@LB@5'-UUU...UGAUC UG AAGAA CA AACU AAA AG GAAGA...GCC-3'@LB@ GAGC GUUG UCAGG UCUCCG GG UUUCUGA GC@LB@ |||| ||:| ||||| |||||| || ||:|||| ||@LB@ CUCG CAGC AGUCC AGAGGC CC AAGGACU CG@LB@3'-UUU...UUACA UUA ACGAA A GCU CAG AG -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -38.2829 kcal/mol@LB@Unfolding Energy - mRNA 12.4901 kcal/mol@LB@Unfolding Energy - sRNA 13.3604 kcal/mol@LB@@LB@Position - mRNA 231 -- 278@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 152 |
0.0188 |
0.4072 |
b0950 |
pqiA |
-8.64 |
0.302533 |
34 -- 75 |
1 -- 61 |
paraquat-inducible SoxRS-regulated inner membrane protein |
|
_____________33_____________________________________________________________76\n_____________|______________________________________________________________|\n5'-CUG...UGAAC__________UCU__A______________________AAAAAAU_____GG__________AAAAU...GUC-3'\n______________GCUGGGAGUA___UG_AGC________________GUU_________GGU____CUGAUCGC\n______________:||||:||:|___||_|||________________|||_________|||____||||||||\n______________UGACCUUCGU___AC_UCG________________CAA_________CCA____GACUAGCG\n3'-UUU...CAUUA__________UAC______UUACAGCACGAAAGUC___GAGGCGCUC___GAAG________-5'\n_____________|_____________________________________________________________|\n_____________62____________________________________________________________1\n |
69 -- 75 |
1 -- 7 |
-32.0531 kcal/mol |
9.29686 kcal/mol |
14.1206 kcal/mol |
33 76@LB@ | |@LB@5'-CUG...UGAAC UCU A AAAAAAU GG AAAAU...GUC-3'@LB@ GCUGGGAGUA UG AGC GUU GGU CUGAUCGC@LB@ :||||:||:| || ||| ||| ||| ||||||||@LB@ UGACCUUCGU AC UCG CAA CCA GACUAGCG@LB@3'-UUU...CAUUA UAC UUACAGCACGAAAGUC GAGGCGCUC GAAG -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -32.0531 kcal/mol@LB@Unfolding Energy - mRNA 9.29686 kcal/mol@LB@Unfolding Energy - sRNA 14.1206 kcal/mol@LB@@LB@Position - mRNA 34 -- 75@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 143 |
0.01687 |
0.3964 |
b3103 |
yhaH |
-11.09 |
0.125996 |
208 -- 287 |
3 -- 67 |
DUF805 family inner membrane protein |
|
_____________207_________________________________________________________________________________288\n_____________|___________________________________________________________________________________|\n5'-AUU...GGACU____U_____A_____CUAAAAAAUU___________C____G__G_G_____CGCAAAGAGUACU__AU____A________AACAU...UUA-3'\n______________GGUA___CUG_AAGUA__________AUGUCG_GUUU_CGGG_UC_U_CGCGG_____________GG__GUUU_UUCUGGUC\n______________:|||___|||_|||:|__________||||||_|:||_|:||_||_|_||||:_____________||__||:|_|:|||:||\n______________UCAU___GAC_UUCGU__________UACAGC_CGAA_GUCC_AG_A_GCGCU_____________CC__CAGA_AGGACUAG\n3'-UUU...CCGAU____UAU___C_____UACACUCGU_______A____A____A____G___________________________________CG-5'\n_____________|___________________________________________________________________________________|\n_____________68__________________________________________________________________________________2\n |
281 -- 287 |
3 -- 9 |
-42.8726 kcal/mol |
17.657 kcal/mol |
14.1245 kcal/mol |
207 288@LB@ | |@LB@5'-AUU...GGACU U A CUAAAAAAUU C G G G CGCAAAGAGUACU AU A AACAU...UUA-3'@LB@ GGUA CUG AAGUA AUGUCG GUUU CGGG UC U CGCGG GG GUUU UUCUGGUC@LB@ :||| ||| |||:| |||||| |:|| |:|| || | ||||: || ||:| |:|||:||@LB@ UCAU GAC UUCGU UACAGC CGAA GUCC AG A GCGCU CC CAGA AGGACUAG@LB@3'-UUU...CCGAU UAU C UACACUCGU A A A G CG-5'@LB@ | |@LB@ 68 2@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -42.8726 kcal/mol@LB@Unfolding Energy - mRNA 17.657 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 208 -- 287@LB@Position - sRNA 3 -- 67@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 102 |
0.01034 |
0.3393 |
b3128 |
garD |
-8.06 |
0.364232 |
93 -- 113 |
5 -- 25 |
D-galactarate dehydrogenase |
|
_____________92____________________114\n_____________|_____________________|\n5'-AUA...UCACA________UUUAAAC______CAUUC...UGA-3'\n______________UUUCUGCG_______UCCUGA\n______________|:||:|||_______||||||\n______________AGAGGCGC_______AGGACU\n3'-UUU...GUCCA________UCCCAGA______AGCG-5'\n_____________|_____________________|\n_____________26____________________4\n |
94 -- 100 |
18 -- 24 |
-19.1191 kcal/mol |
3.34271 kcal/mol |
7.71155 kcal/mol |
92 114@LB@ | |@LB@5'-AUA...UCACA UUUAAAC CAUUC...UGA-3'@LB@ UUUCUGCG UCCUGA@LB@ |:||:||| ||||||@LB@ AGAGGCGC AGGACU@LB@3'-UUU...GUCCA UCCCAGA AGCG-5'@LB@ | |@LB@ 26 4@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -19.1191 kcal/mol@LB@Unfolding Energy - mRNA 3.34271 kcal/mol@LB@Unfolding Energy - sRNA 7.71155 kcal/mol@LB@@LB@Position - mRNA 93 -- 113@LB@Position - sRNA 5 -- 25@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 28 |
0.002335 |
0.2776 |
b3248 |
yhdE |
-16.83 |
0.013392 |
101 -- 153 |
6 -- 68 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________100______________________________________________________________154\n_____________|________________________________________________________________|\n5'-UUA...ACCGG_____U__________________U_____GG_____CU______________A__________CUGAU...AGC-3'\n______________AAGUG_U_CUGG_AGUAGUGU_AG_CAAUG__GUGCU____GG____CCGUGG___UUUUCUUG\n______________||||:_|_||||_||:|:|||_||_|||||__|||||____||____|||:|:___|:|||:||\n______________UUCAU_A_GACC_UCGUUACA_UC_GUUAC__CACGA____CC____GGCGCU___AGAAGGAC\n3'-UUU...ACCGA_____U_U____U________C________AG_____AAGU__AAGA______CCC________UAGCG-5'\n_____________|________________________________________________________________|\n_____________69_______________________________________________________________5\n |
147 -- 153 |
6 -- 12 |
-47.0166 kcal/mol |
16.0597 kcal/mol |
14.1245 kcal/mol |
100 154@LB@ | |@LB@5'-UUA...ACCGG U U GG CU A CUGAU...AGC-3'@LB@ AAGUG U CUGG AGUAGUGU AG CAAUG GUGCU GG CCGUGG UUUUCUUG@LB@ ||||: | |||| ||:|:||| || ||||| ||||| || |||:|: |:|||:||@LB@ UUCAU A GACC UCGUUACA UC GUUAC CACGA CC GGCGCU AGAAGGAC@LB@3'-UUU...ACCGA U U U C AG AAGU AAGA CCC UAGCG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -47.0166 kcal/mol@LB@Unfolding Energy - mRNA 16.0597 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 101 -- 153@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 6 -- 12@LB@ |
