| 148 |
0.01761 |
0.3998 |
b4262 |
lptG |
-10.98 |
0.131149 |
190 -- 206 |
42 -- 57 |
lipopolysaccharide export ABC permease |
|
_____________189_______________207\n_____________|_________________|\n5'-CCA...GUAAA____________U____CCUUU...UCA-3'\n______________GGAGCGGUGUGA_GCAA\n______________|:|||::|||||_||||\n______________CUUCGUUACACU_CGUU\n3'-UUU...AUGAC_________________ACAGC...GCG-5'\n_____________|_________________|\n_____________58________________41\n |
195 -- 201 |
46 -- 52 |
-21.8951 kcal/mol |
7.70229 kcal/mol |
3.20882 kcal/mol |
189 207@LB@ | |@LB@5'-CCA...GUAAA U CCUUU...UCA-3'@LB@ GGAGCGGUGUGA GCAA@LB@ |:|||::||||| ||||@LB@ CUUCGUUACACU CGUU@LB@3'-UUU...AUGAC ACAGC...GCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.8951 kcal/mol@LB@Unfolding Energy - mRNA 7.70229 kcal/mol@LB@Unfolding Energy - sRNA 3.20882 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 157 |
0.0194 |
0.4072 |
b2720 |
hycF |
-4.41 |
0.858528 |
100 -- 115 |
42 -- 59 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________99_________________116\n_____________|__________________|\n5'-CGA...GACCG___U_________C____GAAGA...CAG-3'\n______________UGG___CGAUGUG_GUAA\n______________|||___|:|||||_|:||\n______________ACC___GUUACAC_CGUU\n3'-UUU...UUAUG___UUC_______U____ACAGC...GCG-5'\n_____________|__________________|\n_____________60_________________41\n |
104 -- 110 |
47 -- 53 |
-13.6757 kcal/mol |
5.98921 kcal/mol |
3.27185 kcal/mol |
99 116@LB@ | |@LB@5'-CGA...GACCG U C GAAGA...CAG-3'@LB@ UGG CGAUGUG GUAA@LB@ ||| |:||||| |:||@LB@ ACC GUUACAC CGUU@LB@3'-UUU...UUAUG UUC U ACAGC...GCG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -13.6757 kcal/mol@LB@Unfolding Energy - mRNA 5.98921 kcal/mol@LB@Unfolding Energy - sRNA 3.27185 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 176 |
0.02184 |
0.4113 |
b0153 |
fhuB |
-8.75 |
0.291577 |
190 -- 208 |
42 -- 58 |
iron(3+)-hydroxamate import ABC transporter permease |
|
_____________189_________________209\n_____________|___________________|\n5'-UAU...CCAUC________AGC________ACGAA...CGC-3'\n______________GGAGGUAA___GUGAGUAA\n______________|||:|:||___|||||:||\n______________CCUUCGUU___CACUCGUU\n3'-UUU...UAUGA________A__________ACAGC...GCG-5'\n_____________|___________________|\n_____________59__________________41\n |
202 -- 208 |
42 -- 48 |
-20.4106 kcal/mol |
8.45448 kcal/mol |
3.2101 kcal/mol |
189 209@LB@ | |@LB@5'-UAU...CCAUC AGC ACGAA...CGC-3'@LB@ GGAGGUAA GUGAGUAA@LB@ |||:|:|| |||||:||@LB@ CCUUCGUU CACUCGUU@LB@3'-UUU...UAUGA A ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.4106 kcal/mol@LB@Unfolding Energy - mRNA 8.45448 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 190 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 182 |
0.02236 |
0.4113 |
b2206 |
napA |
-12.10 |
0.085901 |
76 -- 101 |
42 -- 66 |
nitrate reductase periplasmic large subunit |
|
_____________75_________________________102\n_____________|__________________________|\n5'-GAC...UGAUU______G_________AAGAC_____AACGC...UUG-3'\n______________GUGGUG_UGGAAGCAG_____AGCGA\n______________||::|:_||||||||:_____|||:|\n______________CAUUAU_ACCUUCGUU_____UCGUU\n3'-UUU...CGAUU______G_________ACAC______ACAGC...GCG-5'\n_____________|__________________________|\n_____________67_________________________41\n |
85 -- 91 |
51 -- 57 |
-24.6932 kcal/mol |
9.28668 kcal/mol |
3.30477 kcal/mol |
75 102@LB@ | |@LB@5'-GAC...UGAUU G AAGAC AACGC...UUG-3'@LB@ GUGGUG UGGAAGCAG AGCGA@LB@ ||::|: ||||||||: |||:|@LB@ CAUUAU ACCUUCGUU UCGUU@LB@3'-UUU...CGAUU G ACAC ACAGC...GCG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -24.6932 kcal/mol@LB@Unfolding Energy - mRNA 9.28668 kcal/mol@LB@Unfolding Energy - sRNA 3.30477 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 53 |
0.004949 |
0.2905 |
b3353 |
yheT |
-17.66 |
0.009631 |
104 -- 164 |
43 -- 88 |
UPF0017 family putative hydrolase |
|
_____________103____________________________________________________________165\n_____________|______________________________________________________________|\n5'-GAG...ACAGC__________CAAAU____C____AA_____CGAAAUGGCAUG_________CCAG______GCUUG...UGC-3'\n______________AAGCCAGCGC_____CCGG_CUGG__GAGUG____________GCUGGAAGC_____GAGCA\n______________||||||||:|_____||||_||||__:|||:____________:||||||||_____|||||\n______________UUCGGUCGUG_____GGCC_GACC__UUCAU____________UGACCUUCG_____CUCGU\n_________3'-UU________________________GA_____UA___________________UUACA_____UACAG...GCG-5'\n_____________|______________________________________________________________|\n_____________89_____________________________________________________________42\n |
149 -- 155 |
53 -- 59 |
-55.8349 kcal/mol |
23.2651 kcal/mol |
14.9102 kcal/mol |
103 165@LB@ | |@LB@5'-GAG...ACAGC CAAAU C AA CGAAAUGGCAUG CCAG GCUUG...UGC-3'@LB@ AAGCCAGCGC CCGG CUGG GAGUG GCUGGAAGC GAGCA@LB@ ||||||||:| |||| |||| :|||: :|||||||| |||||@LB@ UUCGGUCGUG GGCC GACC UUCAU UGACCUUCG CUCGU@LB@ 3'-UU GA UA UUACA UACAG...GCG-5'@LB@ | |@LB@ 89 42@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -55.8349 kcal/mol@LB@Unfolding Energy - mRNA 23.2651 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 104 -- 164@LB@Position - sRNA 43 -- 88@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 61 |
0.005602 |
0.2905 |
b1778 |
msrB |
-11.92 |
0.091967 |
166 -- 177 |
43 -- 54 |
methionine sulfoxide reductase B |
|
_____________165__________178\n_____________|____________|\n5'-CUU...GUCAC____________CGAUU...GUC-3'\n______________GUAAUGUGAGCA\n______________|:||||||||||\n______________CGUUACACUCGU\n3'-UUU...ACCUU____________UACAG...GCG-5'\n_____________|____________|\n_____________55___________42\n |
171 -- 177 |
43 -- 49 |
-18.0171 kcal/mol |
2.89402 kcal/mol |
3.19978 kcal/mol |
165 178@LB@ | |@LB@5'-CUU...GUCAC CGAUU...GUC-3'@LB@ GUAAUGUGAGCA@LB@ |:||||||||||@LB@ CGUUACACUCGU@LB@3'-UUU...ACCUU UACAG...GCG-5'@LB@ | |@LB@ 55 42@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.0171 kcal/mol@LB@Unfolding Energy - mRNA 2.89402 kcal/mol@LB@Unfolding Energy - sRNA 3.19978 kcal/mol@LB@@LB@Position - mRNA 166 -- 177@LB@Position - sRNA 43 -- 54@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 75 |
0.007199 |
0.3134 |
b2167 |
fruA |
-15.16 |
0.026023 |
90 -- 122 |
43 -- 84 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________89_________________________________________123\n_____________|__________________________________________|\n5'-CGC...UGUUG____________________CA____________________UUACC...AAA-3'\n______________CAGC_CCUGGC_GG_UAAGU________AAGCAAUGUGGGUA\n______________||||_||:|||_||_|||||________||||||||||:|:|\n______________GUCG_GGGCCG_CC_AUUCA________UUCGUUACACUCGU\n_____3'-UUUUCG____U______A__G_____UUAUGACC______________UACAG...GCG-5'\n_____________|__________________________________________|\n_____________85_________________________________________42\n |
116 -- 122 |
43 -- 49 |
-41.7817 kcal/mol |
11.7261 kcal/mol |
14.8963 kcal/mol |
89 123@LB@ | |@LB@5'-CGC...UGUUG CA UUACC...AAA-3'@LB@ CAGC CCUGGC GG UAAGU AAGCAAUGUGGGUA@LB@ |||| ||:||| || ||||| ||||||||||:|:|@LB@ GUCG GGGCCG CC AUUCA UUCGUUACACUCGU@LB@ 3'-UUUUCG U A G UUAUGACC UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -41.7817 kcal/mol@LB@Unfolding Energy - mRNA 11.7261 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 90 -- 122@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 82 |
0.008223 |
0.3318 |
b1654 |
grxD |
-11.69 |
0.100410 |
189 -- 207 |
43 -- 58 |
glutaredoxin-4 |
|
_____________188_________________208\n_____________|___________________|\n5'-AAA...UUUGA________GACAA______CCACU...CUG-3'\n______________GGAAGCAA_____UGAGCA\n______________||||||||_____||||||\n______________CCUUCGUU_____ACUCGU\n3'-UUU...UAUGA________AC_________UACAG...GCG-5'\n_____________|___________________|\n_____________59__________________42\n |
190 -- 196 |
51 -- 57 |
-19.1647 kcal/mol |
4.26252 kcal/mol |
3.20949 kcal/mol |
188 208@LB@ | |@LB@5'-AAA...UUUGA GACAA CCACU...CUG-3'@LB@ GGAAGCAA UGAGCA@LB@ |||||||| ||||||@LB@ CCUUCGUU ACUCGU@LB@3'-UUU...UAUGA AC UACAG...GCG-5'@LB@ | |@LB@ 59 42@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -19.1647 kcal/mol@LB@Unfolding Energy - mRNA 4.26252 kcal/mol@LB@Unfolding Energy - sRNA 3.20949 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 43 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
