52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
35 |
0.003076 |
0.2776 |
b1678 |
ldtE |
-14.38 |
0.035403 |
2 -- 13 |
49 -- 60 |
murein L D-transpeptidase |
|
_____________1____________14\n_____________|____________|\n__________5'-U____________AUUCG...GCC-3'\n______________CUGGAAGCGAUG\n______________||||||||:|||\n______________GACCUUCGUUAC\n3'-UUU...AUUAU____________ACUCG...GCG-5'\n_____________|____________|\n_____________61___________48\n |
7 -- 13 |
49 -- 55 |
-19.7187 kcal/mol |
2.33169 kcal/mol |
3.00762 kcal/mol |
1 14@LB@ | |@LB@ 5'-U AUUCG...GCC-3'@LB@ CUGGAAGCGAUG@LB@ ||||||||:|||@LB@ GACCUUCGUUAC@LB@3'-UUU...AUUAU ACUCG...GCG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -19.7187 kcal/mol@LB@Unfolding Energy - mRNA 2.33169 kcal/mol@LB@Unfolding Energy - sRNA 3.00762 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 49 -- 55@LB@ |
40 |
0.003423 |
0.2776 |
b3901 |
rhaM |
-14.12 |
0.039141 |
284 -- 296 |
49 -- 61 |
L-rhamnose mutarotase |
|
_____________283___________297\n_____________|_____________|\n5'-ACG...CCAGA_____________CUGA-3'\n______________ACUGGAAGCAGUG\n______________||||||||||:||\n______________UGACCUUCGUUAC\n3'-UUU...CAUUA_____________ACUCG...GCG-5'\n_____________|_____________|\n_____________62____________48\n |
290 -- 296 |
49 -- 55 |
-21.3506 kcal/mol |
4.21776 kcal/mol |
3.00866 kcal/mol |
283 297@LB@ | |@LB@5'-ACG...CCAGA CUGA-3'@LB@ ACUGGAAGCAGUG@LB@ ||||||||||:||@LB@ UGACCUUCGUUAC@LB@3'-UUU...CAUUA ACUCG...GCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -14.12 kcal/mol@LB@Hybridization Energy -21.3506 kcal/mol@LB@Unfolding Energy - mRNA 4.21776 kcal/mol@LB@Unfolding Energy - sRNA 3.00866 kcal/mol@LB@@LB@Position - mRNA 284 -- 296@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 49 -- 55@LB@ |
49 |
0.004671 |
0.2905 |
b3184 |
yhbE |
-14.90 |
0.028775 |
284 -- 299 |
49 -- 64 |
EamA family inner membrane putative transporter |
|
_____________283______________300\n_____________|________________|\n5'-AAG...AAGCA________________G-3'\n______________GGUGCUGGAGGUGAUG\n______________::|:|||||:|::|||\n______________UUAUGACCUUCGUUAC\n3'-UUU...AUUCA________________ACUCG...GCG-5'\n_____________|________________|\n_____________65_______________48\n |
293 -- 299 |
49 -- 55 |
-22.6177 kcal/mol |
4.70237 kcal/mol |
3.01036 kcal/mol |
283 300@LB@ | |@LB@5'-AAG...AAGCA G-3'@LB@ GGUGCUGGAGGUGAUG@LB@ ::|:|||||:|::|||@LB@ UUAUGACCUUCGUUAC@LB@3'-UUU...AUUCA ACUCG...GCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -22.6177 kcal/mol@LB@Unfolding Energy - mRNA 4.70237 kcal/mol@LB@Unfolding Energy - sRNA 3.01036 kcal/mol@LB@@LB@Position - mRNA 284 -- 299@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 49 -- 55@LB@ |
78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
129 |
0.01401 |
0.3627 |
b0696 |
kdpC |
-11.63 |
0.102829 |
282 -- 295 |
49 -- 63 |
potassium translocating ATPase subunit C |
|
_____________281_____________296\n_____________|_______________|\n5'-GCG...CCACC_______________GUGGU-3'\n______________GUACUGG_GGCAAUG\n______________:||||||_:||||||\n______________UAUGACC_UCGUUAC\n3'-UUU...UUCAU_______U_______ACUCG...GCG-5'\n_____________|_______________|\n_____________64______________48\n |
289 -- 295 |
49 -- 55 |
-18.0603 kcal/mol |
3.42021 kcal/mol |
3.01015 kcal/mol |
281 296@LB@ | |@LB@5'-GCG...CCACC GUGGU-3'@LB@ GUACUGG GGCAAUG@LB@ :|||||| :||||||@LB@ UAUGACC UCGUUAC@LB@3'-UUU...UUCAU U ACUCG...GCG-5'@LB@ | |@LB@ 64 48@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -18.0603 kcal/mol@LB@Unfolding Energy - mRNA 3.42021 kcal/mol@LB@Unfolding Energy - sRNA 3.01015 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 49 -- 63@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 49 -- 55@LB@ |
172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |
107 |
0.0112 |
0.3489 |
b3012 |
dkgA |
-15.28 |
0.024842 |
250 -- 292 |
50 -- 87 |
2 5-diketo-D-gluconate reductase A |
|
_____________249__________________________________________293\n_____________|____________________________________________|\n5'-CUG...GCCCC______G___G___GUC____AAGC________A__________CACCGCCA-3'\n______________AGCUGG_ACU_GGC___UGGC____AAGUAAUG__GGAAGUAAU\n______________|||::|_||:_|||___||||____|||||||:__|||||:|||\n______________UCGGUC_UGG_CCG___ACCG____UUCAUUAU__CCUUCGUUA\n________3'-UUU______G___G__________A___________GA_________CACUC...GCG-5'\n_____________|____________________________________________|\n_____________88___________________________________________49\n |
286 -- 292 |
50 -- 56 |
-41.0731 kcal/mol |
11.2031 kcal/mol |
14.5934 kcal/mol |
249 293@LB@ | |@LB@5'-CUG...GCCCC G G GUC AAGC A CACCGCCA-3'@LB@ AGCUGG ACU GGC UGGC AAGUAAUG GGAAGUAAU@LB@ |||::| ||: ||| |||| |||||||: |||||:|||@LB@ UCGGUC UGG CCG ACCG UUCAUUAU CCUUCGUUA@LB@ 3'-UUU G G A GA CACUC...GCG-5'@LB@ | |@LB@ 88 49@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -41.0731 kcal/mol@LB@Unfolding Energy - mRNA 11.2031 kcal/mol@LB@Unfolding Energy - sRNA 14.5934 kcal/mol@LB@@LB@Position - mRNA 250 -- 292@LB@Position - sRNA 50 -- 87@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 50 -- 56@LB@ |
130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |