| 140 |
0.006451 |
0.1741 |
bsu29090 |
polA |
-11.51 |
0.167440 |
58 -- 84 |
30 -- 56 |
DNA polymerase I |
|
_____________57________________85\n_____________|_________________|\n5'-AUG...CGGGA________G________GUCCU...AUA-3'\n______________ACCUAUUU__UGUUCCC\n______________|||:||:|__|:|||||\n______________UGGGUAGA__AUAAGGG\n3'-AUU...UAGCA________GA_______GUAAA...CAA-5'\n_____________|_________________|\n_____________57________________29\n |
67 -- 73 |
40 -- 46 |
-17.5976 kcal/mol |
2.41953 kcal/mol |
7.22212 kcal/mol |
57 85@LB@ | |@LB@5'-AUG...CGGGA G GUCCU...AUA-3'@LB@ ACCUAUUU UGUUCCC@LB@ |||:||:| |:|||||@LB@ UGGGUAGA AUAAGGG@LB@3'-AUU...UAGCA GA GUAAA...CAA-5'@LB@ | |@LB@ 57 29@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -17.5976 kcal/mol@LB@Unfolding Energy - mRNA 2.41953 kcal/mol@LB@Unfolding Energy - sRNA 7.22212 kcal/mol@LB@@LB@Position - mRNA 58 -- 84@LB@Position - sRNA 30 -- 56@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 108 |
0.004583 |
0.1633 |
bsu07910 |
yfkF |
-13.96 |
0.054522 |
60 -- 82 |
157 -- 179 |
MFS transporter |
|
_____________59______________83\n_____________|_______________|\n5'-GGC...UUAUU_______________AAACC...CAA-3'\n______________UUUAUUCUUCA_CAA\n______________||||:||||||_|||\n______________AAAUGAGAAGU_GUU\n3'-AUU...AAAAA___________A___GUCCU...CAA-5'\n_____________|_______________|\n_____________180_____________156\n |
73 -- 79 |
161 -- 167 |
-12.117 kcal/mol |
0.967911 kcal/mol |
1.36352 kcal/mol |
59 83@LB@ | |@LB@5'-GGC...UUAUU AAACC...CAA-3'@LB@ UUUAUUCUUCA CAA@LB@ ||||:|||||| |||@LB@ AAAUGAGAAGU GUU@LB@3'-AUU...AAAAA A GUCCU...CAA-5'@LB@ | |@LB@ 180 156@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -12.117 kcal/mol@LB@Unfolding Energy - mRNA 0.967911 kcal/mol@LB@Unfolding Energy - sRNA 1.36352 kcal/mol@LB@@LB@Position - mRNA 60 -- 82@LB@Position - sRNA 157 -- 179@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 161 -- 167@LB@ |
| 144 |
0.006712 |
0.1741 |
bsu25040 |
yqgB |
-19.28 |
0.004052 |
60 -- 160 |
55 -- 168 |
Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 15294815; Product type ph: phenotype |
|
_____________59_____________________________________________________161\n_____________|______________________________________________________|\n5'-UAA...AAAAC__C_______AACA__CAAU______A_______AG___CCAUCC_________ACUCU...UUU-3'\n______________CG_UGCAAUC____GC____ACAA_C_UAUCCAU__CUU______UCCCAUUUU\n______________||_|||||||____||____||||_|_||:||||__|||______:|||||||:\n______________GC_ACGUUAG____CG____UGUU_G_AUGGGUA__GAA______GGGGUAAAG\n3'-AUU...CCGAA__A_______AAC___UU______A_C_______GA___UAA____________AAACU...CAA-5'\n_____________|______________________________________________________|\n_____________169____________________________________________________54\n |
105 -- 111 |
34 -- 40 |
-33.5165 kcal/mol |
5.00067 kcal/mol |
13.93 kcal/mol |
59 161@LB@ | |@LB@5'-UAA...AAAAC C AACA CAAU A AG CCAUCC ACUCU...UUU-3'@LB@ CG UGCAAUC GC ACAA C UAUCCAU CUU UCCCAUUUU@LB@ || ||||||| || |||| | ||:|||| ||| :|||||||:@LB@ GC ACGUUAG CG UGUU G AUGGGUA GAA GGGGUAAAG@LB@3'-AUU...CCGAA A AAC UU A C GA UAA AAACU...CAA-5'@LB@ | |@LB@ 169 54@LB@@LB@@LB@Energy -19.28 kcal/mol@LB@Hybridization Energy -33.5165 kcal/mol@LB@Unfolding Energy - mRNA 5.00067 kcal/mol@LB@Unfolding Energy - sRNA 13.93 kcal/mol@LB@@LB@Position - mRNA 60 -- 160@LB@Position - sRNA 55 -- 168@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 60 |
0.001877 |
0.1212 |
bsu12040 |
yjdG |
-19.63 |
0.003403 |
61 -- 106 |
39 -- 81 |
N-acetyltransferase YjdG |
|
_____________60_______________________________________________107\n_____________|________________________________________________|\n5'-ACC...CUACC____UUU_____G_______UC___________AC____UCAA_____CUCAA...UAG-3'\n______________CGUU___GGUCU_GGCAAAC__UC__ACCUGUC__UCUU____UCCCC\n______________||||___::|||_|||||||__||__|||::||__||||____|||||\n______________GCAA___UUAGA_CCGUUUG__AG__UGGGUAG__AGAA____AGGGG\n3'-AUU...CCGAA____CG______A_______UU__CA_____________UA_______UAAAG...CAA-5'\n_____________|________________________________________________|\n_____________82_______________________________________________38\n |
85 -- 91 |
50 -- 56 |
-36.328 kcal/mol |
6.99682 kcal/mol |
13.0865 kcal/mol |
60 107@LB@ | |@LB@5'-ACC...CUACC UUU G UC AC UCAA CUCAA...UAG-3'@LB@ CGUU GGUCU GGCAAAC UC ACCUGUC UCUU UCCCC@LB@ |||| ::||| ||||||| || |||::|| |||| |||||@LB@ GCAA UUAGA CCGUUUG AG UGGGUAG AGAA AGGGG@LB@3'-AUU...CCGAA CG A UU CA UA UAAAG...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -19.63 kcal/mol@LB@Hybridization Energy -36.328 kcal/mol@LB@Unfolding Energy - mRNA 6.99682 kcal/mol@LB@Unfolding Energy - sRNA 13.0865 kcal/mol@LB@@LB@Position - mRNA 61 -- 106@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 34 |
0.001006 |
0.1147 |
bsu37620 |
rsfA |
-13.01 |
0.085239 |
64 -- 106 |
124 -- 165 |
prespore-specific transcriptional regulator RsfA |
|
_____________63_________________________________________________107\n_____________|__________________________________________________|\n5'-UUC...ACAUC__A_______UU__A_____UC_____________U_____CCGC_____CCUUC...ACG-3'\n______________AC_CUUCAUU__AC_AGGAU___GAC__UGUUC_C_GCAAG____UCCAU\n______________||_||||||:__||_||||:___|||__|||:|_|_|||||____|||||\n______________UG_GAAGUAG__UG_UCCUG___CUG__ACAGG_G_CGUUC____AGGUA\n3'-AUU...AAAAA__A_______U_________UAA___UA_____C_U_____A________UAUUA...CAA-5'\n_____________|__________________________________________________|\n_____________166________________________________________________123\n |
64 -- 70 |
159 -- 165 |
-31.4528 kcal/mol |
7.34844 kcal/mol |
10.3728 kcal/mol |
63 107@LB@ | |@LB@5'-UUC...ACAUC A UU A UC U CCGC CCUUC...ACG-3'@LB@ AC CUUCAUU AC AGGAU GAC UGUUC C GCAAG UCCAU@LB@ || ||||||: || ||||: ||| |||:| | ||||| |||||@LB@ UG GAAGUAG UG UCCUG CUG ACAGG G CGUUC AGGUA@LB@3'-AUU...AAAAA A U UAA UA C U A UAUUA...CAA-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -31.4528 kcal/mol@LB@Unfolding Energy - mRNA 7.34844 kcal/mol@LB@Unfolding Energy - sRNA 10.3728 kcal/mol@LB@@LB@Position - mRNA 64 -- 106@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 159 -- 165@LB@ |
| 121 |
0.005491 |
0.1741 |
bsu40190 |
fbp |
-16.50 |
0.016068 |
67 -- 83 |
53 -- 69 |
fructose-1 6-bisphosphatase |
|
_____________66________________84\n_____________|_________________|\n5'-AAA...AAUGA___________U_____UAAAC...GCA-3'\n______________GGCAAACAAUC_UACCC\n______________|||||||||||_|||||\n______________CCGUUUGUUAG_AUGGG\n3'-AUU...UAGAA___________C_____UAGAG...CAA-5'\n_____________|_________________|\n_____________70________________52\n |
71 -- 77 |
59 -- 65 |
-25.6398 kcal/mol |
2.55798 kcal/mol |
7.79863 kcal/mol |
66 84@LB@ | |@LB@5'-AAA...AAUGA U UAAAC...GCA-3'@LB@ GGCAAACAAUC UACCC@LB@ ||||||||||| |||||@LB@ CCGUUUGUUAG AUGGG@LB@3'-AUU...UAGAA C UAGAG...CAA-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -25.6398 kcal/mol@LB@Unfolding Energy - mRNA 2.55798 kcal/mol@LB@Unfolding Energy - sRNA 7.79863 kcal/mol@LB@@LB@Position - mRNA 67 -- 83@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 182 |
0.008397 |
0.1751 |
bsu38410 |
sacX |
-16.96 |
0.012854 |
69 -- 151 |
101 -- 169 |
negative regulator of SacY activity |
|
_____________68_____________________________________________________________________________________152\n_____________|______________________________________________________________________________________|\n5'-ACA...UCUCA_____CG_________C_______U________AUUUU____C___AUUUCUCACUUUU_____UU____A______AC_______UUGAU...UAA-3'\n______________UGCUC__UCGUCGACG_GGGCAUU____UUGUC_____CAGC_GGU_____________UUCAU____UG_UUGUCA__UUUUCAU\n______________|:|||__||:||:||:_||:||||____|||||_____||||_:||_____________|:|||____||_||||||__||:||||\n______________AUGAG__AGUAGUUGU_CCUGUAA____AACAG_____GUCG_UCA_____________AGGUA____AC_AACAGU__AAGAGUA\n3'-AUU...AAAAA_____A__________________CUGU_____GC_______U_____________________UAUU_________GA_______GAAGU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________170____________________________________________________________________________________100\n |
143 -- 149 |
103 -- 109 |
-47.5037 kcal/mol |
18.4019 kcal/mol |
14.5039 kcal/mol |
68 152@LB@ | |@LB@5'-ACA...UCUCA CG C U AUUUU C AUUUCUCACUUUU UU A AC UUGAU...UAA-3'@LB@ UGCUC UCGUCGACG GGGCAUU UUGUC CAGC GGU UUCAU UG UUGUCA UUUUCAU@LB@ |:||| ||:||:||: ||:|||| ||||| |||| :|| |:||| || |||||| ||:||||@LB@ AUGAG AGUAGUUGU CCUGUAA AACAG GUCG UCA AGGUA AC AACAGU AAGAGUA@LB@3'-AUU...AAAAA A CUGU GC U UAUU GA GAAGU...CAA-5'@LB@ | |@LB@ 170 100@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -47.5037 kcal/mol@LB@Unfolding Energy - mRNA 18.4019 kcal/mol@LB@Unfolding Energy - sRNA 14.5039 kcal/mol@LB@@LB@Position - mRNA 69 -- 151@LB@Position - sRNA 101 -- 169@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 131 |
0.006003 |
0.1741 |
bsu37510 |
pbpG |
-10.90 |
0.216982 |
70 -- 106 |
84 -- 108 |
penicillin-binding protein 2D |
|
_____________69____________________________________107\n_____________|_____________________________________|\n5'-UGU...UGAAA___________CCUAAGGAAA_____UAGA_______GGGGA...UGU-3'\n______________UCUCAUUUUCA__________AAGUA____GGAUGGC\n______________||||||:||||__________|||||____|:|||||\n______________AGAGUAGAAGU__________UUCAU____CUUACCG\n3'-AUU...GUGAA__________________________UA_________AAGCA...CAA-5'\n_____________|_____________________________________|\n_____________109___________________________________83\n |
100 -- 106 |
84 -- 90 |
-24.2284 kcal/mol |
7.40636 kcal/mol |
9.09036 kcal/mol |
69 107@LB@ | |@LB@5'-UGU...UGAAA CCUAAGGAAA UAGA GGGGA...UGU-3'@LB@ UCUCAUUUUCA AAGUA GGAUGGC@LB@ ||||||:|||| ||||| |:|||||@LB@ AGAGUAGAAGU UUCAU CUUACCG@LB@3'-AUU...GUGAA UA AAGCA...CAA-5'@LB@ | |@LB@ 109 83@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.2284 kcal/mol@LB@Unfolding Energy - mRNA 7.40636 kcal/mol@LB@Unfolding Energy - sRNA 9.09036 kcal/mol@LB@@LB@Position - mRNA 70 -- 106@LB@Position - sRNA 84 -- 108@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 30 |
0.0008394 |
0.1059 |
bsu25600 |
comER |
-17.70 |
0.008924 |
72 -- 169 |
82 -- 187 |
ComE operon protein 4 |
|
_____________71__________________________________________________170\n_____________|___________________________________________________|\n5'-AGC...AAUAA____UU____AU__U___UCAACCA_______GUGCA_________C____GUCAU...CAA-3'\n______________UUGC__UCUU__GC_GAU_______AUUCAUC_____UGUUCCCCG_UUUC\n______________||||__||||__||_:|:_______|::||||_____|:||||||:_||||\n______________AACG__AGAA__CG_UUG_______UGGGUAG_____AUAAGGGGU_AAAG\n3'-AUU...GAAGC____UU____C___U___UUAGCA________AGA________________AAACU...CAA-5'\n_____________|___________________________________________________|\n_____________188_________________________________________________81\n |
126 -- 132 |
38 -- 44 |
-31.3225 kcal/mol |
7.58891 kcal/mol |
13.8007 kcal/mol |
71 170@LB@ | |@LB@5'-AGC...AAUAA UU AU U UCAACCA GUGCA C GUCAU...CAA-3'@LB@ UUGC UCUU GC GAU AUUCAUC UGUUCCCCG UUUC@LB@ |||| |||| || :|: |::|||| |:||||||: ||||@LB@ AACG AGAA CG UUG UGGGUAG AUAAGGGGU AAAG@LB@3'-AUU...GAAGC UU C U UUAGCA AGA AAACU...CAA-5'@LB@ | |@LB@ 188 81@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -31.3225 kcal/mol@LB@Unfolding Energy - mRNA 7.58891 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 72 -- 169@LB@Position - sRNA 82 -- 187@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 122 |
0.005613 |
0.1741 |
bsu19770 |
cgeC |
-14.56 |
0.041162 |
73 -- 119 |
6 -- 59 |
spore maturation protein CgeC |
|
_____________72_______________________________________________________120\n_____________|________________________________________________________|\n5'-CAC...AACGC_______G____AUUU___A_______AAG__________________________AAUGG...AAG-3'\n______________CGUACCU_AUCU____UUC_UCUAUUU___________GAAAAUGCU_GAUUUUUU\n______________||||||:_||||____|||_:|:||||___________|||||:|||_:||||:||\n______________GCAUGGG_UAGA____AAG_GGGUAAA___________CUUUUGCGA_UUAAAGAA\n3'-AUU...UGUUA____________GAAU___________GAAACUUUAAA_________A________AACAA-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________5\n |
105 -- 111 |
15 -- 21 |
-32.5895 kcal/mol |
8.55003 kcal/mol |
11.8347 kcal/mol |
72 120@LB@ | |@LB@5'-CAC...AACGC G AUUU A AAG AAUGG...AAG-3'@LB@ CGUACCU AUCU UUC UCUAUUU GAAAAUGCU GAUUUUUU@LB@ ||||||: |||| ||| :|:|||| |||||:||| :||||:||@LB@ GCAUGGG UAGA AAG GGGUAAA CUUUUGCGA UUAAAGAA@LB@3'-AUU...UGUUA GAAU GAAACUUUAAA A AACAA-5'@LB@ | |@LB@ 60 5@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -32.5895 kcal/mol@LB@Unfolding Energy - mRNA 8.55003 kcal/mol@LB@Unfolding Energy - sRNA 11.8347 kcal/mol@LB@@LB@Position - mRNA 73 -- 119@LB@Position - sRNA 6 -- 59@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 15 -- 21@LB@ |
