| 72 |
0.002326 |
0.1242 |
bsu10730 |
yisI |
-10.35 |
0.272902 |
44 -- 108 |
96 -- 182 |
aspartyl-phosphate phosphatase YisI |
|
_____________43___________________________________109\n_____________|____________________________________|\n5'-UAG...AAAGG_________AAA________________________GUCAA...UGG-3'\n______________CCGCAGCAA_____________UUGUCGCUUUUUUA\n______________|||||||||_____________|||||:||||:|:|\n______________GGCGUCGUU_____________AACAGUGAAAGAGU\n3'-AUU...UAACA_________CAAGGUAUAUUAC______________AGAAG...CAA-5'\n_____________|____________________________________|\n_____________183__________________________________95\n |
90 -- 96 |
110 -- 116 |
-28.3207 kcal/mol |
8.15126 kcal/mol |
10.3722 kcal/mol |
43 109@LB@ | |@LB@5'-UAG...AAAGG AAA GUCAA...UGG-3'@LB@ CCGCAGCAA UUGUCGCUUUUUUA@LB@ ||||||||| |||||:||||:|:|@LB@ GGCGUCGUU AACAGUGAAAGAGU@LB@3'-AUU...UAACA CAAGGUAUAUUAC AGAAG...CAA-5'@LB@ | |@LB@ 183 95@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.3207 kcal/mol@LB@Unfolding Energy - mRNA 8.15126 kcal/mol@LB@Unfolding Energy - sRNA 10.3722 kcal/mol@LB@@LB@Position - mRNA 44 -- 108@LB@Position - sRNA 96 -- 182@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 110 -- 116@LB@ |
| 173 |
0.008072 |
0.1751 |
bsu38150 |
qoxC |
-9.07 |
0.441891 |
44 -- 68 |
85 -- 107 |
quinol oxidase subunit 3 |
|
_____________43__________________69\n_____________|___________________|\n5'-ACC...AAUAU______GAAACC_______UUAAU...CAG-3'\n______________CAAUCU______GGCAGAC\n______________||||||______||||:||\n______________GUUAGA______CCGUUUG\n3'-AUU...GCAAC______A____________UUAGC...CAA-5'\n_____________|___________________|\n_____________108_________________84\n |
258 -- 264 |
63 -- 69 |
-12.9926 kcal/mol |
3.83118 kcal/mol |
4.58338 kcal/mol |
43 69@LB@ | |@LB@5'-ACC...AAUAU GAAACC UUAAU...CAG-3'@LB@ CAAUCU GGCAGAC@LB@ |||||| ||||:||@LB@ GUUAGA CCGUUUG@LB@3'-AUU...GCAAC A UUAGC...CAA-5'@LB@ | |@LB@ 108 84@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.9926 kcal/mol@LB@Unfolding Energy - mRNA 3.83118 kcal/mol@LB@Unfolding Energy - sRNA 4.58338 kcal/mol@LB@@LB@Position - mRNA 44 -- 68@LB@Position - sRNA 85 -- 107@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 92 |
0.003598 |
0.1515 |
bsu22200 |
cotD |
-17.29 |
0.010920 |
45 -- 158 |
37 -- 130 |
spore coat protein D |
|
_____________44________________________________________________________________________________________________________________________159\n_____________|_________________________________________________________________________________________________________________________|\n5'-AUU...UACUU_____U___U___GUAUUU___A________GU_________CUU___A__CA_____AA_____CACUUUUAAAAUAG_____U___UCAG_____________________________AACUU...ACC-3'\n______________GUUCU_UGU_GUG______UUG_UUGCUUUU__GUUUUCAAA___UAA_GA___GCUU__UUGCA______________GUCUU_GCA____AACA__UGUACCC____CUUAUUUUUCAU\n______________||||:_|:|_:||______|||_|::||||:__:|:||||||___|||_||___||||__|||||______________:||||_|||____||||__:||||||____||||||:::|||\n______________CAAGG_AUA_UAC______AAC_AGUGAAAG__UAGAAGUUU___AUU_CU___CGAA__AACGU______________UAGAA_CGU____UUGU__GCAUGGG____GAAUAAGGGGUA\n3'-AUU...UCGUU_____U___U_____________________AG_________C_____A__UAC____GC________________________C___________UA_______UAGA____________AAGAA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________|\n_____________131_______________________________________________________________________________________________________________________36\n |
147 -- 153 |
42 -- 48 |
-55.4941 kcal/mol |
20.5826 kcal/mol |
23.6024 kcal/mol |
44 159@LB@ | |@LB@5'-AUU...UACUU U U GUAUUU A GU CUU A CA AA CACUUUUAAAAUAG U UCAG AACUU...ACC-3'@LB@ GUUCU UGU GUG UUG UUGCUUUU GUUUUCAAA UAA GA GCUU UUGCA GUCUU GCA AACA UGUACCC CUUAUUUUUCAU@LB@ ||||: |:| :|| ||| |::||||: :|:|||||| ||| || |||| ||||| :|||| ||| |||| :|||||| ||||||:::|||@LB@ CAAGG AUA UAC AAC AGUGAAAG UAGAAGUUU AUU CU CGAA AACGU UAGAA CGU UUGU GCAUGGG GAAUAAGGGGUA@LB@3'-AUU...UCGUU U U AG C A UAC GC C UA UAGA AAGAA...CAA-5'@LB@ | |@LB@ 131 36@LB@@LB@@LB@Energy -17.29 kcal/mol@LB@Hybridization Energy -55.4941 kcal/mol@LB@Unfolding Energy - mRNA 20.5826 kcal/mol@LB@Unfolding Energy - sRNA 23.6024 kcal/mol@LB@@LB@Position - mRNA 45 -- 158@LB@Position - sRNA 37 -- 130@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 96 |
0.003858 |
0.1541 |
bsu03700 |
gerKA |
-12.88 |
0.090279 |
45 -- 139 |
38 -- 125 |
spore germination protein KA |
|
_____________44_________________________________________140\n_____________|__________________________________________|\n5'-UUG...CCUCC_____UAG___CU___U________GA____A____G_____AACCC...CGG-3'\n______________GCUUU___UGU__AUC_UUGGCGGA__AGUU_UACC_CAUCU\n______________||||:___||:__|||_|||||::|__|:|:_||||_|||||\n______________CGAAG___ACG__UAG_AACCGUUU__UUAG_AUGG_GUAGA\n3'-AUU...CUUAC_____CA____U_____________G_____C__________GAAUA...CAA-5'\n_____________|__________________________________________|\n_____________126________________________________________37\n |
108 -- 114 |
65 -- 71 |
-29.7431 kcal/mol |
10.7852 kcal/mol |
9.08698 kcal/mol |
44 140@LB@ | |@LB@5'-UUG...CCUCC UAG CU U GA A G AACCC...CGG-3'@LB@ GCUUU UGU AUC UUGGCGGA AGUU UACC CAUCU@LB@ ||||: ||: ||| |||||::| |:|: |||| |||||@LB@ CGAAG ACG UAG AACCGUUU UUAG AUGG GUAGA@LB@3'-AUU...CUUAC CA U G C GAAUA...CAA-5'@LB@ | |@LB@ 126 37@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -29.7431 kcal/mol@LB@Unfolding Energy - mRNA 10.7852 kcal/mol@LB@Unfolding Energy - sRNA 9.08698 kcal/mol@LB@@LB@Position - mRNA 45 -- 139@LB@Position - sRNA 38 -- 125@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 59 |
0.001868 |
0.1212 |
bsu12260 |
yjlA |
-14.41 |
0.044077 |
46 -- 133 |
103 -- 182 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________45__________________________________________________________________134\n_____________|___________________________________________________________________|\n5'-CGG...UGUCU_____UC_______UUCACCUCCCUUUU______UCCACAUAUA_____UCG_____AAC_______UUUUC...GGA-3'\n______________CUCUU__CAUCAAU______________UUGUCU__________GCGGU_____CCA___AUGAUGU\n______________|||||__||||||:______________|||||:__________||:|:_____|||___||:||||\n______________GAGAA__GUAGUUG______________AACAGG__________CGUCG_____GGU___UAUUACA\n3'-AUU...AAAAU______________UCCUGUAACUGU_______________________UUCAA___A_________ACAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________183_________________________________________________________________102\n |
118 -- 124 |
117 -- 123 |
-27.4081 kcal/mol |
7.08838 kcal/mol |
10.6441 kcal/mol |
45 134@LB@ | |@LB@5'-CGG...UGUCU UC UUCACCUCCCUUUU UCCACAUAUA UCG AAC UUUUC...GGA-3'@LB@ CUCUU CAUCAAU UUGUCU GCGGU CCA AUGAUGU@LB@ ||||| ||||||: |||||: ||:|: ||| ||:||||@LB@ GAGAA GUAGUUG AACAGG CGUCG GGU UAUUACA@LB@3'-AUU...AAAAU UCCUGUAACUGU UUCAA A ACAGU...CAA-5'@LB@ | |@LB@ 183 102@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -27.4081 kcal/mol@LB@Unfolding Energy - mRNA 7.08838 kcal/mol@LB@Unfolding Energy - sRNA 10.6441 kcal/mol@LB@@LB@Position - mRNA 46 -- 133@LB@Position - sRNA 103 -- 182@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 27 |
0.0007779 |
0.1059 |
bsu31480 |
yuxJ |
-17.06 |
0.012234 |
48 -- 110 |
4 -- 55 |
MFS transporter |
|
_____________47______________________________________________________________111\n_____________|_______________________________________________________________|\n5'-UGC...AAUUC___U____GACAU___________CUAA____AA____UUUUCCCAGC_____C_________AAAUU...UUG-3'\n______________CCC_UCUC_____UUCUUCAUUUU____AAAU__UGAA__________CGCUU_GUUUCUUUU\n______________|||_||||_____|||::|||||:____||||__||||__________|||||_:||||||||\n______________GGG_AGAG_____AAGGGGUAAAG____UUUA__ACUU__________GCGAA_UAAAGAAAA\n3'-AUU...AGCAU___U____AAU_____________AAAC____A_____UU_____________U_________CAA-5'\n_____________|_______________________________________________________________|\n_____________56______________________________________________________________3\n |
104 -- 110 |
4 -- 10 |
-33.1771 kcal/mol |
7.88293 kcal/mol |
11.7347 kcal/mol |
47 111@LB@ | |@LB@5'-UGC...AAUUC U GACAU CUAA AA UUUUCCCAGC C AAAUU...UUG-3'@LB@ CCC UCUC UUCUUCAUUUU AAAU UGAA CGCUU GUUUCUUUU@LB@ ||| |||| |||::|||||: |||| |||| ||||| :||||||||@LB@ GGG AGAG AAGGGGUAAAG UUUA ACUU GCGAA UAAAGAAAA@LB@3'-AUU...AGCAU U AAU AAAC A UU U CAA-5'@LB@ | |@LB@ 56 3@LB@@LB@@LB@Energy -17.06 kcal/mol@LB@Hybridization Energy -33.1771 kcal/mol@LB@Unfolding Energy - mRNA 7.88293 kcal/mol@LB@Unfolding Energy - sRNA 11.7347 kcal/mol@LB@@LB@Position - mRNA 48 -- 110@LB@Position - sRNA 4 -- 55@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 56 |
0.00183 |
0.1212 |
bsu11770 |
cotW |
-16.10 |
0.019548 |
48 -- 170 |
31 -- 163 |
spore coat protein W |
|
_____________47_______________________________________171\n_____________|________________________________________|\n5'-UCU...UAAAA__________CC__________CAAAAUUACUU_______CGACG...GGG-3'\n______________UUAUCAACAG__GCA___ACAU___________UGUCUGC\n______________|:||||||||__:||___||||___________||||:||\n______________AGUAGUUGUC__UGU___UGUA___________ACAGGCG\n3'-AUU...UGAGA__________C____AAC______________________UCGUU...CAA-5'\n_____________|________________________________________|\n_____________164______________________________________30\n |
78 -- 84 |
136 -- 142 |
-21.9263 kcal/mol |
4.68907 kcal/mol |
7.4131 kcal/mol |
47 171@LB@ | |@LB@5'-UCU...UAAAA CC CAAAAUUACUU CGACG...GGG-3'@LB@ UUAUCAACAG GCA ACAU UGUCUGC@LB@ |:|||||||| :|| |||| ||||:||@LB@ AGUAGUUGUC UGU UGUA ACAGGCG@LB@3'-AUU...UGAGA C AAC UCGUU...CAA-5'@LB@ | |@LB@ 164 30@LB@@LB@@LB@Energy -16.10 kcal/mol@LB@Hybridization Energy -21.9263 kcal/mol@LB@Unfolding Energy - mRNA 4.68907 kcal/mol@LB@Unfolding Energy - sRNA 7.4131 kcal/mol@LB@@LB@Position - mRNA 48 -- 170@LB@Position - sRNA 31 -- 163@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 136 -- 142@LB@ |
| 133 |
0.006226 |
0.1741 |
bsu14430 |
ykpA |
-10.78 |
0.228396 |
48 -- 105 |
75 -- 129 |
ABC transporter ATP-binding protein |
|
_____________47____________106\n_____________|_____________|\n5'-GUA...AAGUU_____________AAUAU...UUG-3'\n______________AUUUGAAGAUGUU\n______________|||||||:|:|:|\n______________UAAACUUUUGCGA\n3'-AUU...AACUU_____________AUUAA...CAA-5'\n_____________|_____________|\n_____________130___________74\n |
254 -- 260 |
15 -- 21 |
-11.9489 kcal/mol |
0.844332 kcal/mol |
3.96844 kcal/mol |
47 106@LB@ | |@LB@5'-GUA...AAGUU AAUAU...UUG-3'@LB@ AUUUGAAGAUGUU@LB@ |||||||:|:|:|@LB@ UAAACUUUUGCGA@LB@3'-AUU...AACUU AUUAA...CAA-5'@LB@ | |@LB@ 130 74@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -11.9489 kcal/mol@LB@Unfolding Energy - mRNA 0.844332 kcal/mol@LB@Unfolding Energy - sRNA 3.96844 kcal/mol@LB@@LB@Position - mRNA 48 -- 105@LB@Position - sRNA 75 -- 129@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 126 |
0.005872 |
0.1741 |
bsu36510 |
amtB |
-10.53 |
0.253946 |
51 -- 89 |
33 -- 57 |
ammonium transporter NrgA |
|
_____________50_____________________________________________________________________________________90\n_____________|______________________________________________________________________________________|\n______5'-CUCAU______A_____UUUUAUAGAUACAA______AUAUC____AAAA____AU____C_______UUCCAUCCCUCGAUAA_______CAAAA...GCA-3'\n______________AUGAAU_GUUUC______________AGUCUU_____GCAA____UGCC__UCUC___UUCCU________________CAUUUCU\n______________||||||_|:|||______________|:||||_____:|||____|:||__||||___||||:________________|||||||\n______________UACUUA_CGAAG______________UUAGAA_____UGUU____AUGG__AGAG___AAGGG________________GUAAAGA\n3'-AUU...UUCAU______C_____CAACG_______________CCGUU____AGC_____GU____AAU____________________________AACUU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________58_____________________________________________________________________________________32\n |
83 -- 89 |
33 -- 39 |
-30.7855 kcal/mol |
7.29289 kcal/mol |
15.7787 kcal/mol |
50 90@LB@ | |@LB@ 5'-CUCAU A UUUUAUAGAUACAA AUAUC AAAA AU C UUCCAUCCCUCGAUAA CAAAA...GCA-3'@LB@ AUGAAU GUUUC AGUCUU GCAA UGCC UCUC UUCCU CAUUUCU@LB@ |||||| |:||| |:|||| :||| |:|| |||| ||||: |||||||@LB@ UACUUA CGAAG UUAGAA UGUU AUGG AGAG AAGGG GUAAAGA@LB@3'-AUU...UUCAU C CAACG CCGUU AGC GU AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -30.7855 kcal/mol@LB@Unfolding Energy - mRNA 7.29289 kcal/mol@LB@Unfolding Energy - sRNA 15.7787 kcal/mol@LB@@LB@Position - mRNA 51 -- 89@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 117 |
0.005342 |
0.1741 |
bsu33050 |
gerAA |
-9.34 |
0.402150 |
52 -- 63 |
38 -- 49 |
spore germination protein A1 |
|
_____________51___________64\n_____________|____________|\n5'-UAA...UUUCU____________GCUAG...UGC-3'\n______________UCUUGUUUUCCA\n______________||||:||::|||\n______________AGAAUAAGGGGU\n3'-AUU...GGUAG____________AAAGA...CAA-5'\n_____________|____________|\n_____________50___________37\n |
57 -- 63 |
38 -- 44 |
-12.8318 kcal/mol |
1.31908 kcal/mol |
4.13482 kcal/mol |
51 64@LB@ | |@LB@5'-UAA...UUUCU GCUAG...UGC-3'@LB@ UCUUGUUUUCCA@LB@ ||||:||::|||@LB@ AGAAUAAGGGGU@LB@3'-AUU...GGUAG AAAGA...CAA-5'@LB@ | |@LB@ 50 37@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -12.8318 kcal/mol@LB@Unfolding Energy - mRNA 1.31908 kcal/mol@LB@Unfolding Energy - sRNA 4.13482 kcal/mol@LB@@LB@Position - mRNA 52 -- 63@LB@Position - sRNA 38 -- 49@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
