| 14 |
0.0004671 |
0.1011 |
bsu04470 |
dctP |
-11.58 |
0.162472 |
124 -- 147 |
15 -- 44 |
C4-dicarboxylate transport protein |
bsu02340 bsu10220 |
_____________123____________________________148\n_____________|______________________________|\n5'-AAA...UAAAC_______GA__________A__________AUCAU...AAC-3'\n______________UUCCCCA___CU_____GU_UGAAAACGCU\n______________|||||||___||_____:|_||||||||||\n______________AAGGGGU___GA_____UA_ACUUUUGCGA\n3'-AUU...AGAAU_______AAA__AACUU__A__________AUUAA...CAA-5'\n_____________|______________________________|\n_____________45_____________________________14\n |
141 -- 147 |
15 -- 21 |
-23.6241 kcal/mol |
3.82582 kcal/mol |
8.2119 kcal/mol |
123 148@LB@ | |@LB@5'-AAA...UAAAC GA A AUCAU...AAC-3'@LB@ UUCCCCA CU GU UGAAAACGCU@LB@ ||||||| || :| ||||||||||@LB@ AAGGGGU GA UA ACUUUUGCGA@LB@3'-AUU...AGAAU AAA AACUU A AUUAA...CAA-5'@LB@ | |@LB@ 45 14@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -23.6241 kcal/mol@LB@Unfolding Energy - mRNA 3.82582 kcal/mol@LB@Unfolding Energy - sRNA 8.2119 kcal/mol@LB@@LB@Position - mRNA 124 -- 147@LB@Position - sRNA 15 -- 44@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 200 |
0.009037 |
0.1751 |
bsu15760 |
prpC |
-17.37 |
0.010506 |
124 -- 148 |
133 -- 158 |
protein phosphatase PrpC |
|
_____________123_________________________149\n_____________|___________________________|\n5'-ACG...AAGAG___A_______________A_______CUGCG...UUG-3'\n______________AGC_AGGACA_UGACAUUG__CGCAGC\n______________|:|_||||||_||||||||__||||||\n______________UUG_UCCUGU_ACUGUAAC__GCGUCG\n3'-AUU...AGUAG__________A________AG______UUCAA...CAA-5'\n_____________|___________________________|\n_____________159_________________________132\n |
135 -- 141 |
141 -- 147 |
-32.4946 kcal/mol |
7.19227 kcal/mol |
8.48433 kcal/mol |
123 149@LB@ | |@LB@5'-ACG...AAGAG A A CUGCG...UUG-3'@LB@ AGC AGGACA UGACAUUG CGCAGC@LB@ |:| |||||| |||||||| ||||||@LB@ UUG UCCUGU ACUGUAAC GCGUCG@LB@3'-AUU...AGUAG A AG UUCAA...CAA-5'@LB@ | |@LB@ 159 132@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -32.4946 kcal/mol@LB@Unfolding Energy - mRNA 7.19227 kcal/mol@LB@Unfolding Energy - sRNA 8.48433 kcal/mol@LB@@LB@Position - mRNA 124 -- 148@LB@Position - sRNA 133 -- 158@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 141 -- 147@LB@ |
| 146 |
0.00677 |
0.1741 |
bsu29690 |
acuA |
-9.85 |
0.331997 |
126 -- 137 |
14 -- 25 |
acetoin utilization protein AcuA |
|
_____________125____________138\n_____________|______________|\n5'-UAU...AUUCA______________UUUUA...AUG-3'\n______________UAUUCUUC_UCAAU\n______________||:|||||_||||:\n______________AUGAGAAG_AGUUG\n3'-AUU...AAAAA________U_____UCCUG...CAA-5'\n_____________|______________|\n_____________26_____________13\n |
95 -- 101 |
162 -- 168 |
-12.3213 kcal/mol |
1.49895 kcal/mol |
1.40683 kcal/mol |
125 138@LB@ | |@LB@5'-UAU...AUUCA UUUUA...AUG-3'@LB@ UAUUCUUC UCAAU@LB@ ||:||||| ||||:@LB@ AUGAGAAG AGUUG@LB@3'-AUU...AAAAA U UCCUG...CAA-5'@LB@ | |@LB@ 26 13@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -12.3213 kcal/mol@LB@Unfolding Energy - mRNA 1.49895 kcal/mol@LB@Unfolding Energy - sRNA 1.40683 kcal/mol@LB@@LB@Position - mRNA 126 -- 137@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 162 -- 168@LB@ |
| 75 |
0.002405 |
0.1242 |
bsu01600 |
ybbA |
-13.26 |
0.075734 |
128 -- 177 |
34 -- 77 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 12354229 2974033; Product type pe: enzyme' |
|
_____________127______________________________________________178\n_____________|________________________________________________|\n5'-UCA...CGCAG___UC_________________________GGA_______________AUAUC...UUU-3'\n______________GCA__AUUUUGGCG_________AUCC_UC____GUUCCUUAUUUCUU\n______________|||__||:|||||:_________|:||_||____:||||::|||||||\n______________CGU__UAGAACCGU_________UGGG_AG____UAAGGGGUAAAGAA\n3'-AUU...AGCAA______________UUGUUAGCA____U__AGAA______________ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________78_______________________________________________33\n |
158 -- 164 |
32 -- 38 |
-31.1473 kcal/mol |
6.80918 kcal/mol |
13.8943 kcal/mol |
127 178@LB@ | |@LB@5'-UCA...CGCAG UC GGA AUAUC...UUU-3'@LB@ GCA AUUUUGGCG AUCC UC GUUCCUUAUUUCUU@LB@ ||| ||:|||||: |:|| || :||||::|||||||@LB@ CGU UAGAACCGU UGGG AG UAAGGGGUAAAGAA@LB@3'-AUU...AGCAA UUGUUAGCA U AGAA ACUUU...CAA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -31.1473 kcal/mol@LB@Unfolding Energy - mRNA 6.80918 kcal/mol@LB@Unfolding Energy - sRNA 13.8943 kcal/mol@LB@@LB@Position - mRNA 128 -- 177@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 87 |
0.003215 |
0.1423 |
bsu04140 |
pbpC |
-8.12 |
0.599206 |
128 -- 139 |
96 -- 107 |
penicillin-binding protein 3 |
|
______________128_____140\n______________|_______|\n___________5'-________AAGGC...CAU-3'\n______________UCUUGUUC\n______________||||:|||\n______________AGAAUAAG\n3'-AUU...GGUAG________GGGUA...CAA-5'\n_____________|________|\n_____________108______95\n |
2 -- 8 |
42 -- 48 |
-8.08477 kcal/mol |
0.903572 kcal/mol |
0.0615861 kcal/mol |
128 140@LB@ | |@LB@ 5'- AAGGC...CAU-3'@LB@ UCUUGUUC@LB@ ||||:|||@LB@ AGAAUAAG@LB@3'-AUU...GGUAG GGGUA...CAA-5'@LB@ | |@LB@ 108 95@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -8.08477 kcal/mol@LB@Unfolding Energy - mRNA 0.903572 kcal/mol@LB@Unfolding Energy - sRNA 0.0615861 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 96 -- 107@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 88 |
0.003231 |
0.1423 |
bsu34620 |
mdxD |
-9.76 |
0.344052 |
128 -- 173 |
81 -- 130 |
glucan 1 4-alpha-maltohexaosidase |
|
_____________127____________174\n_____________|______________|\n5'-GUU...AUGCA__GA_______C__GCCAU...GUG-3'\n______________GC__UUCAUCA_CA\n______________:|__|||||||_||\n______________UG__AAGUAGU_GU\n3'-AUU...AAAAA__AG_______U__CCUGU...CAA-5'\n_____________|______________|\n_____________131____________80\n |
220 -- 226 |
158 -- 164 |
-10.4913 kcal/mol |
1.73429 kcal/mol |
1.41528 kcal/mol |
127 174@LB@ | |@LB@5'-GUU...AUGCA GA C GCCAU...GUG-3'@LB@ GC UUCAUCA CA@LB@ :| ||||||| ||@LB@ UG AAGUAGU GU@LB@3'-AUU...AAAAA AG U CCUGU...CAA-5'@LB@ | |@LB@ 131 80@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -10.4913 kcal/mol@LB@Unfolding Energy - mRNA 1.73429 kcal/mol@LB@Unfolding Energy - sRNA 1.41528 kcal/mol@LB@@LB@Position - mRNA 128 -- 173@LB@Position - sRNA 81 -- 130@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 196 |
0.008988 |
0.1751 |
bsu24970 |
pstA |
-9.97 |
0.317060 |
128 -- 176 |
38 -- 86 |
ABC transporter permease |
|
_____________127___________________________________________________177\n_____________|_____________________________________________________|\n5'-AUU...AAUGG___________U__________UGU__U__U________CUG_______G___CUUGU...UUA-3'\n______________GGCUU_G_UGC__UC_UGGUGA___CA_UC_UGUUCAUC___CUUAUUC_CUA\n______________|||||_|_|||__||_|||::|___||_||_|:::||||___|||||||_|:|\n______________CCGAA_C_ACG__AG_ACCGUU___GU_AG_AUGGGUAG___GAAUAAG_GGU\n3'-AUU...ACUUA_____G_A___UU__A______U____U__C________A_________G___AAAGA...CAA-5'\n_____________|_____________________________________________________|\n_____________87____________________________________________________37\n |
166 -- 172 |
42 -- 48 |
-33.9261 kcal/mol |
12.9253 kcal/mol |
13.9524 kcal/mol |
127 177@LB@ | |@LB@5'-AUU...AAUGG U UGU U U CUG G CUUGU...UUA-3'@LB@ GGCUU G UGC UC UGGUGA CA UC UGUUCAUC CUUAUUC CUA@LB@ ||||| | ||| || |||::| || || |:::|||| ||||||| |:|@LB@ CCGAA C ACG AG ACCGUU GU AG AUGGGUAG GAAUAAG GGU@LB@3'-AUU...ACUUA G A UU A U U C A G AAAGA...CAA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -33.9261 kcal/mol@LB@Unfolding Energy - mRNA 12.9253 kcal/mol@LB@Unfolding Energy - sRNA 13.9524 kcal/mol@LB@@LB@Position - mRNA 128 -- 176@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 181 |
0.008392 |
0.1751 |
bsu19600 |
yodH |
-10.70 |
0.236480 |
130 -- 154 |
156 -- 183 |
methyltransferase |
|
_____________129______________155\n_____________|________________|\n5'-AAC...CUUCU____________A___CUAUG...CCU-3'\n______________UUUGCUUUUCAU_AAC\n______________|||:||:|||||_|||\n______________AAAUGAGAAGUA_UUG\n3'-AUU...AAAAA____________G___UCCUG...CAA-5'\n_____________|________________|\n_____________184______________155\n |
144 -- 150 |
160 -- 166 |
-13.2566 kcal/mol |
3.14685 kcal/mol |
1.41519 kcal/mol |
129 155@LB@ | |@LB@5'-AAC...CUUCU A CUAUG...CCU-3'@LB@ UUUGCUUUUCAU AAC@LB@ |||:||:||||| |||@LB@ AAAUGAGAAGUA UUG@LB@3'-AUU...AAAAA G UCCUG...CAA-5'@LB@ | |@LB@ 184 155@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -13.2566 kcal/mol@LB@Unfolding Energy - mRNA 3.14685 kcal/mol@LB@Unfolding Energy - sRNA 1.41519 kcal/mol@LB@@LB@Position - mRNA 130 -- 154@LB@Position - sRNA 156 -- 183@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 165 |
0.007704 |
0.1751 |
bsu18170 |
yngA |
-16.77 |
0.014091 |
132 -- 192 |
122 -- 181 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________131_____________________________________________193\n_____________|_______________________________________________|\n5'-ACA...CAUAU_________UGUU____CA___C_______UAU______________CAACA...CGC-3'\n______________UUUAUUAAU____UAUU__ACA_UGUCCGC___AGUAA__UCCAUAU\n______________||:||:||:____:|||__|||_|||||||___||:||__|||||||\n______________AAGUAGUUG____GUAA__UGU_ACAGGCG___UCGUU__AGGUAUA\n3'-AUU...AUGAG_________UCCU____C____A_______________CA_______UUACA...CAA-5'\n_____________|_______________________________________________|\n_____________182_____________________________________________121\n |
186 -- 192 |
122 -- 128 |
-30.4083 kcal/mol |
4.20108 kcal/mol |
10.3807 kcal/mol |
131 193@LB@ | |@LB@5'-ACA...CAUAU UGUU CA C UAU CAACA...CGC-3'@LB@ UUUAUUAAU UAUU ACA UGUCCGC AGUAA UCCAUAU@LB@ ||:||:||: :||| ||| ||||||| ||:|| |||||||@LB@ AAGUAGUUG GUAA UGU ACAGGCG UCGUU AGGUAUA@LB@3'-AUU...AUGAG UCCU C A CA UUACA...CAA-5'@LB@ | |@LB@ 182 121@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -30.4083 kcal/mol@LB@Unfolding Energy - mRNA 4.20108 kcal/mol@LB@Unfolding Energy - sRNA 10.3807 kcal/mol@LB@@LB@Position - mRNA 132 -- 192@LB@Position - sRNA 122 -- 181@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 122 -- 128@LB@ |
| 91 |
0.00349 |
0.1486 |
bsu28050 |
maf |
-6.37 |
0.874324 |
134 -- 184 |
39 -- 85 |
septum formation protein Maf |
|
_____________133_____185\n_____________|_______|\n5'-GAA...CCCUA_______AUUGU...AAG-3'\n______________CUCCAUU\n______________|:|||||\n______________GGGGUAA\n3'-AUU...AAUAA_______AGAAA...CAA-5'\n_____________|_______|\n_____________86______38\n |
275 -- 281 |
36 -- 42 |
-8.4297 kcal/mol |
0.414575 kcal/mol |
2.55634 kcal/mol |
133 185@LB@ | |@LB@5'-GAA...CCCUA AUUGU...AAG-3'@LB@ CUCCAUU@LB@ |:|||||@LB@ GGGGUAA@LB@3'-AUU...AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 86 38@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -8.4297 kcal/mol@LB@Unfolding Energy - mRNA 0.414575 kcal/mol@LB@Unfolding Energy - sRNA 2.55634 kcal/mol@LB@@LB@Position - mRNA 134 -- 184@LB@Position - sRNA 39 -- 85@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 36 -- 42@LB@ |
