89 |
0.003315 |
0.1443 |
bsu30460 |
ytrA |
-11.86 |
0.143485 |
75 -- 137 |
74 -- 137 |
GntR family transcriptional regulator |
|
_____________74__________________________________________________________________138\n_____________|___________________________________________________________________|\n5'-UUU...UGAUU_______________AUCGC_____CU_______U_G___UU________UC_______AAUG____AAAAG...AUA-3'\n______________GCGGCA___UCUGUG_____UUGUU__UUUUUUC_U_UUC___GUGAUGA__GGUUUUG____GCAA\n______________||:|||___||::|:_____||||:__:|||:||_|_|||___||:||||__||:||:|____||||\n______________CGUCGU___AGGUAU_____AACAG__GAAAGAG_A_AAG___CAUUACU__CCGAAGC____CGUU\n3'-AUU...ACAGG______UCA______AUUAC_____U________U_G___UUU_______UA_______AA______AGAAC...CAA-5'\n_____________|___________________________________________________________________|\n_____________138_________________________________________________________________73\n |
123 -- 129 |
80 -- 86 |
-41.3024 kcal/mol |
16.5538 kcal/mol |
14.8582 kcal/mol |
74 138@LB@ | |@LB@5'-UUU...UGAUU AUCGC CU U G UU UC AAUG AAAAG...AUA-3'@LB@ GCGGCA UCUGUG UUGUU UUUUUUC U UUC GUGAUGA GGUUUUG GCAA@LB@ ||:||| ||::|: ||||: :|||:|| | ||| ||:|||| ||:||:| ||||@LB@ CGUCGU AGGUAU AACAG GAAAGAG A AAG CAUUACU CCGAAGC CGUU@LB@3'-AUU...ACAGG UCA AUUAC U U G UUU UA AA AGAAC...CAA-5'@LB@ | |@LB@ 138 73@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -41.3024 kcal/mol@LB@Unfolding Energy - mRNA 16.5538 kcal/mol@LB@Unfolding Energy - sRNA 14.8582 kcal/mol@LB@@LB@Position - mRNA 75 -- 137@LB@Position - sRNA 74 -- 137@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 80 -- 86@LB@ |
152 |
0.006831 |
0.1741 |
bsu09480 |
yhdI |
-9.89 |
0.327778 |
76 -- 101 |
102 -- 130 |
GntR family transcriptional regulator |
bsu05240 |
_____________75__________________________102\n_____________|___________________________|\n5'-UCU...UAAUU___________A________C______AUCCC...CAA-3'\n______________GUUUCAUAUGG_____UCAU_UUCUCA\n______________|||:|||||::_____|||:_||||||\n______________CAAGGUAUAUU_____AGUG_AAGAGU\n3'-AUU...UCGUU___________ACAAC____A______AGAAG...CAA-5'\n_____________|___________________________|\n_____________131_________________________101\n |
79 -- 85 |
121 -- 127 |
-18.1477 kcal/mol |
2.87073 kcal/mol |
6.25825 kcal/mol |
75 102@LB@ | |@LB@5'-UCU...UAAUU A C AUCCC...CAA-3'@LB@ GUUUCAUAUGG UCAU UUCUCA@LB@ |||:|||||:: |||: ||||||@LB@ CAAGGUAUAUU AGUG AAGAGU@LB@3'-AUU...UCGUU ACAAC A AGAAG...CAA-5'@LB@ | |@LB@ 131 101@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -18.1477 kcal/mol@LB@Unfolding Energy - mRNA 2.87073 kcal/mol@LB@Unfolding Energy - sRNA 6.25825 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 102 -- 130@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 121 -- 127@LB@ |
170 |
0.007871 |
0.1751 |
bsu13520 |
ykrP |
-11.14 |
0.196181 |
76 -- 136 |
99 -- 167 |
membrane-bound acyltransferase YkrP |
|
_____________75____________137\n_____________|_____________|\n5'-GGA...CCGUC_____A_______CUAAC...AUC-3'\n______________ACUUU_CAUCGAC\n______________|||:|_||||:||\n______________UGAGA_GUAGUUG\n3'-AUU...AAAAA_____A_______UCCUG...CAA-5'\n_____________|_____________|\n_____________168___________98\n |
91 -- 97 |
156 -- 162 |
-12.1838 kcal/mol |
0.966795 kcal/mol |
1.40592 kcal/mol |
75 137@LB@ | |@LB@5'-GGA...CCGUC A CUAAC...AUC-3'@LB@ ACUUU CAUCGAC@LB@ |||:| ||||:||@LB@ UGAGA GUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 168 98@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -12.1838 kcal/mol@LB@Unfolding Energy - mRNA 0.966795 kcal/mol@LB@Unfolding Energy - sRNA 1.40592 kcal/mol@LB@@LB@Position - mRNA 76 -- 136@LB@Position - sRNA 99 -- 167@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 156 -- 162@LB@ |
159 |
0.007366 |
0.1751 |
bsu06380 |
yebC |
-16.67 |
0.014812 |
77 -- 156 |
105 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________76__________________________________________________________________________157\n_____________|___________________________________________________________________________|\n5'-ACC...CAUGC_______AA___G__AAU________________AGGAA___UUC___A__U____UAA________________GCUGA...CGA-3'\n______________UUUACUU___AU_GA___GAC_UUGAC__UGUUC_____GGC___GGU_CC_UAUA___GUGUU_UUAUUUUCUU\n______________||||||:___||_:|___|||_|||||__|||:|_____:||___:||_||_||||___:||||_|:|:|||||:\n______________AAAUGAG___UA_UU___CUG_AACUG__ACAGG_____UCG___UCA_GG_AUAU___UACAA_AGUGAAAGAG\n3'-AUU...AAAAA_______AAG__G__GUC___U_____UA_____CG______U_____A__U____________C__________UAGAA...CAA-5'\n_____________|___________________________________________________________________________|\n_____________186_________________________________________________________________________104\n |
87 -- 93 |
165 -- 171 |
-36.2834 kcal/mol |
12.0661 kcal/mol |
14.3768 kcal/mol |
76 157@LB@ | |@LB@5'-ACC...CAUGC AA G AAU AGGAA UUC A U UAA GCUGA...CGA-3'@LB@ UUUACUU AU GA GAC UUGAC UGUUC GGC GGU CC UAUA GUGUU UUAUUUUCUU@LB@ ||||||: || :| ||| ||||| |||:| :|| :|| || |||| :|||| |:|:|||||:@LB@ AAAUGAG UA UU CUG AACUG ACAGG UCG UCA GG AUAU UACAA AGUGAAAGAG@LB@3'-AUU...AAAAA AAG G GUC U UA CG U A U C UAGAA...CAA-5'@LB@ | |@LB@ 186 104@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -36.2834 kcal/mol@LB@Unfolding Energy - mRNA 12.0661 kcal/mol@LB@Unfolding Energy - sRNA 14.3768 kcal/mol@LB@@LB@Position - mRNA 77 -- 156@LB@Position - sRNA 105 -- 185@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 165 -- 171@LB@ |
169 |
0.007812 |
0.1751 |
bsu04680 |
rsbS |
-7.92 |
0.633185 |
77 -- 93 |
53 -- 67 |
RsbT antagonist protein RsbS |
|
_____________76___________________94\n_____________|____________________|\n5'-UAU...GGAAA______AAACAA________CUGGG...AAG-3'\n______________UUGCUC______UCGUCAAC\n______________||:|||______||:|||||\n______________AAUGAG______AGUAGUUG\n3'-AUU...AAAAA______A_____________UCCUG...CAA-5'\n_____________|____________________|\n_____________68___________________52\n |
85 -- 91 |
156 -- 162 |
-12.3218 kcal/mol |
3.62054 kcal/mol |
1.40896 kcal/mol |
76 94@LB@ | |@LB@5'-UAU...GGAAA AAACAA CUGGG...AAG-3'@LB@ UUGCUC UCGUCAAC@LB@ ||:||| ||:|||||@LB@ AAUGAG AGUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 68 52@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -12.3218 kcal/mol@LB@Unfolding Energy - mRNA 3.62054 kcal/mol@LB@Unfolding Energy - sRNA 1.40896 kcal/mol@LB@@LB@Position - mRNA 77 -- 93@LB@Position - sRNA 53 -- 67@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 156 -- 162@LB@ |
35 |
0.001083 |
0.1199 |
bsu38140 |
qoxD |
-14.68 |
0.038800 |
80 -- 211 |
61 -- 193 |
quinol oxidase subunit 4 |
|
_____________79_________________212\n_____________|__________________|\n5'-UUU...GGGUC_____AA___________AUCUG...CAG-3'\n______________UGUAA___UGGCAAACAA\n______________||:||___||||||||||\n______________ACGUU___ACCGUUUGUU\n3'-AUU...AAGCA_____AGA__________AGCAU...CAA-5'\n_____________|__________________|\n_____________194________________60\n |
204 -- 210 |
62 -- 68 |
-16.9019 kcal/mol |
4.29892 kcal/mol |
4.69882 kcal/mol |
79 212@LB@ | |@LB@5'-UUU...GGGUC AA AUCUG...CAG-3'@LB@ UGUAA UGGCAAACAA@LB@ ||:|| ||||||||||@LB@ ACGUU ACCGUUUGUU@LB@3'-AUU...AAGCA AGA AGCAU...CAA-5'@LB@ | |@LB@ 194 60@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -16.9019 kcal/mol@LB@Unfolding Energy - mRNA 4.29892 kcal/mol@LB@Unfolding Energy - sRNA 4.69882 kcal/mol@LB@@LB@Position - mRNA 80 -- 211@LB@Position - sRNA 61 -- 193@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 62 -- 68@LB@ |
67 |
0.002241 |
0.1242 |
bsu04040 |
ycsE |
-12.95 |
0.087665 |
83 -- 153 |
117 -- 184 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________82________________________________________________________________________________154\n_____________|_________________________________________________________________________________|\n________5'-AUC____C____AAG________C__GG___UUU__U___G_________GC______________GUCAU______UC_____CACCG...GCA-3'\n______________GGAU_GGUU___UCGUUGUG_UC__GGU___CA_UUG__UUUGUUUU__UGUUUUU__UUUCU_____GUUUGA__AC_CU\n______________|:||_||:|___||||||::_||__||:___||_|:|__::::|:|:__|:||:::__|||||_____:|||||__||_||\n______________CUUA_CCGA___AGCAACGU_AG__CCG___GU_AGC__GGGUAGAG__AUAAGGG__AAAGA_____UAAACU__UG_GA\n3'-AUU...CAUUA____________________U__AA___UUU__U___AU________A________GU_____AACUU______UU__C__AUUAA...CAA-5'\n_____________|_________________________________________________________________________________|\n_____________185_______________________________________________________________________________116\n |
52 -- 58 |
40 -- 46 |
-38.9686 kcal/mol |
11.5965 kcal/mol |
18.2899 kcal/mol |
82 154@LB@ | |@LB@ 5'-AUC C AAG C GG UUU U G GC GUCAU UC CACCG...GCA-3'@LB@ GGAU GGUU UCGUUGUG UC GGU CA UUG UUUGUUUU UGUUUUU UUUCU GUUUGA AC CU@LB@ |:|| ||:| ||||||:: || ||: || |:| ::::|:|: |:||::: ||||| :||||| || ||@LB@ CUUA CCGA AGCAACGU AG CCG GU AGC GGGUAGAG AUAAGGG AAAGA UAAACU UG GA@LB@3'-AUU...CAUUA U AA UUU U AU A GU AACUU UU C AUUAA...CAA-5'@LB@ | |@LB@ 185 116@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -38.9686 kcal/mol@LB@Unfolding Energy - mRNA 11.5965 kcal/mol@LB@Unfolding Energy - sRNA 18.2899 kcal/mol@LB@@LB@Position - mRNA 83 -- 153@LB@Position - sRNA 117 -- 184@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 40 -- 46@LB@ |
81 |
0.002798 |
0.1325 |
bsu03250 |
ycgR |
-7.37 |
0.727097 |
84 -- 130 |
48 -- 86 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________83_______________________________________________131\n_____________|________________________________________________|\n5'-GCG...UACUC__________G____CUAACCAAAGUG________CUUUC___UC___CGUCA...GAA-3'\n______________GGCUUU_UUG_AAUC____________AAACGAUC_____CCC__CUC\n______________|||||:_|||_||||____________||||:|||_____|||__|||\n______________CCGAAG_AAC_UUAG____________UUUGUUAG_____GGG__GAG\n3'-AUU...ACUUA______C___G____AACCG_______________CAU_____UA___AAUAA...CAA-5'\n_____________|________________________________________________|\n_____________87_______________________________________________47\n |
111 -- 117 |
59 -- 65 |
-26.5811 kcal/mol |
9.91993 kcal/mol |
9.18845 kcal/mol |
83 131@LB@ | |@LB@5'-GCG...UACUC G CUAACCAAAGUG CUUUC UC CGUCA...GAA-3'@LB@ GGCUUU UUG AAUC AAACGAUC CCC CUC@LB@ |||||: ||| |||| ||||:||| ||| |||@LB@ CCGAAG AAC UUAG UUUGUUAG GGG GAG@LB@3'-AUU...ACUUA C G AACCG CAU UA AAUAA...CAA-5'@LB@ | |@LB@ 87 47@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -26.5811 kcal/mol@LB@Unfolding Energy - mRNA 9.91993 kcal/mol@LB@Unfolding Energy - sRNA 9.18845 kcal/mol@LB@@LB@Position - mRNA 84 -- 130@LB@Position - sRNA 48 -- 86@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 59 -- 65@LB@ |
7 |
0.0001858 |
0.08823 |
bsu34210 |
yvfG |
-17.07 |
0.012126 |
85 -- 142 |
32 -- 86 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________84____________________________________________________________143\n_____________|_____________________________________________________________|\n5'-GAG...GUUGA______AAUAC___________C____GUU__A__________GCUCAC____________CAUUG...ACU-3'\n______________GGCUUU_____UUGUA__CUUG_UGAA___UC_UAUCCAUCUU______UCCCC_UUUCUU\n______________|||||:_____|||:|__||||_::||___||_||:||||||:______|||||_||||||\n______________CCGAAG_____AACGU__GAAC_GUUU___AG_AUGGGUAGAG______AGGGG_AAAGAA\n3'-AUU...ACUUA______C_________UA____C____GUU__C__________AAUA_______U______ACUUU...CAA-5'\n_____________|_____________________________________________________________|\n_____________87____________________________________________________________31\n |
119 -- 125 |
48 -- 54 |
-40.7387 kcal/mol |
11.2598 kcal/mol |
14.8836 kcal/mol |
84 143@LB@ | |@LB@5'-GAG...GUUGA AAUAC C GUU A GCUCAC CAUUG...ACU-3'@LB@ GGCUUU UUGUA CUUG UGAA UC UAUCCAUCUU UCCCC UUUCUU@LB@ |||||: |||:| |||| ::|| || ||:||||||: ||||| ||||||@LB@ CCGAAG AACGU GAAC GUUU AG AUGGGUAGAG AGGGG AAAGAA@LB@3'-AUU...ACUUA C UA C GUU C AAUA U ACUUU...CAA-5'@LB@ | |@LB@ 87 31@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -40.7387 kcal/mol@LB@Unfolding Energy - mRNA 11.2598 kcal/mol@LB@Unfolding Energy - sRNA 14.8836 kcal/mol@LB@@LB@Position - mRNA 85 -- 142@LB@Position - sRNA 32 -- 86@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 48 -- 54@LB@ |
47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |