| 19 |
0.0005622 |
0.1011 |
bsu33310 |
fhuB |
-20.25 |
0.002499 |
30 -- 116 |
99 -- 184 |
iron(3+)-hydroxamate import system permease protein FhuB |
bsu01620 |
_____________29__________________________________________________________________117\n_____________|___________________________________________________________________|\n5'-AGG...UGCAA___A__________AAAAA____________UCC_______UU_____U___G______A_______ACCUU...AAG-3'\n______________UCA_UAACAGGGCA___________CGCGGC___GAGUUUC__GUAUA_AUG__GUCAU__UCUCAU\n______________|||_:||||||:||___________|||:||___:||||:|__:||||_|||__||||:__||||||\n______________AGU_GUUGUCCUGU___________GCGUCG___UUCAAGG__UAUAU_UAC__CAGUG__AGAGUA\n3'-AUU...UGAGA___A__________AACUGUAACAG___________________________AA_____AA______GAAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________185_________________________________________________________________98\n |
80 -- 86 |
126 -- 132 |
-44.6592 kcal/mol |
13.3222 kcal/mol |
14.475 kcal/mol |
29 117@LB@ | |@LB@5'-AGG...UGCAA A AAAAA UCC UU U G A ACCUU...AAG-3'@LB@ UCA UAACAGGGCA CGCGGC GAGUUUC GUAUA AUG GUCAU UCUCAU@LB@ ||| :||||||:|| |||:|| :||||:| :|||| ||| ||||: ||||||@LB@ AGU GUUGUCCUGU GCGUCG UUCAAGG UAUAU UAC CAGUG AGAGUA@LB@3'-AUU...UGAGA A AACUGUAACAG AA AA GAAGU...CAA-5'@LB@ | |@LB@ 185 98@LB@@LB@@LB@Energy -20.25 kcal/mol@LB@Hybridization Energy -44.6592 kcal/mol@LB@Unfolding Energy - mRNA 13.3222 kcal/mol@LB@Unfolding Energy - sRNA 14.475 kcal/mol@LB@@LB@Position - mRNA 30 -- 116@LB@Position - sRNA 99 -- 184@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 126 -- 132@LB@ |
| 31 |
0.0008564 |
0.1059 |
bsu10290 |
yhfN |
-10.46 |
0.260955 |
32 -- 88 |
131 -- 186 |
metalloprotease YhfN |
|
_____________31__________________89\n_____________|___________________|\n5'-AUG...GCAAG__________G________ACUUG...AAG-3'\n______________UGG_AUUG_C_GCAGCAGG\n______________||:_||||_|_||||||:|\n______________ACU_UAAC_G_CGUCGUUC\n3'-AUU...CUGUA___G____A_G________AAGGU...CAA-5'\n_____________|___________________|\n_____________187_________________130\n |
220 -- 226 |
130 -- 136 |
-18.5522 kcal/mol |
5.78917 kcal/mol |
6.22375 kcal/mol |
31 89@LB@ | |@LB@5'-AUG...GCAAG G ACUUG...AAG-3'@LB@ UGG AUUG C GCAGCAGG@LB@ ||: |||| | ||||||:|@LB@ ACU UAAC G CGUCGUUC@LB@3'-AUU...CUGUA G A G AAGGU...CAA-5'@LB@ | |@LB@ 187 130@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.5522 kcal/mol@LB@Unfolding Energy - mRNA 5.78917 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 32 -- 88@LB@Position - sRNA 131 -- 186@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 192 |
0.00876 |
0.1751 |
bsu33520 |
csoR |
-16.67 |
0.014798 |
32 -- 56 |
39 -- 62 |
copper-sensing transcriptional repressor CsoR |
|
_____________31_________________________57\n_____________|__________________________|\n5'-CGG...ACCUU___________CU______C______UUUAA...GAG-3'\n______________GAUCGUAUCCA__UUUCUU__UCCCC\n______________:||||||:|||__|:||||__|||||\n______________UUAGCAUGGGU__AGAGAA__AGGGG\n3'-AUU...GUUUG___________________UA_____UAAAG...CAA-5'\n_____________|__________________________|\n_____________63_________________________38\n |
33 -- 39 |
55 -- 61 |
-27.3317 kcal/mol |
3.5392 kcal/mol |
9.04037 kcal/mol |
31 57@LB@ | |@LB@5'-CGG...ACCUU CU C UUUAA...GAG-3'@LB@ GAUCGUAUCCA UUUCUU UCCCC@LB@ :||||||:||| |:|||| |||||@LB@ UUAGCAUGGGU AGAGAA AGGGG@LB@3'-AUU...GUUUG UA UAAAG...CAA-5'@LB@ | |@LB@ 63 38@LB@@LB@@LB@Energy -16.67 kcal/mol@LB@Hybridization Energy -27.3317 kcal/mol@LB@Unfolding Energy - mRNA 3.5392 kcal/mol@LB@Unfolding Energy - sRNA 9.04037 kcal/mol@LB@@LB@Position - mRNA 32 -- 56@LB@Position - sRNA 39 -- 62@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 193 |
0.008782 |
0.1751 |
bsu13160 |
ohrB |
-9.78 |
0.341127 |
32 -- 61 |
100 -- 129 |
organic hydroperoxide resistance protein OhrB |
|
_____________31_________62\n_____________|__________|\n5'-CAU...GGACG__________AUUAC...AUG-3'\n______________AGCAGGACAU\n______________|:||||||||\n______________UUGUCCUGUA\n3'-AUU...AGUAG__________ACUGU...CAA-5'\n_____________|__________|\n_____________130________99\n |
245 -- 251 |
149 -- 155 |
-15.2334 kcal/mol |
1.87143 kcal/mol |
5.55277 kcal/mol |
31 62@LB@ | |@LB@5'-CAU...GGACG AUUAC...AUG-3'@LB@ AGCAGGACAU@LB@ |:||||||||@LB@ UUGUCCUGUA@LB@3'-AUU...AGUAG ACUGU...CAA-5'@LB@ | |@LB@ 130 99@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.2334 kcal/mol@LB@Unfolding Energy - mRNA 1.87143 kcal/mol@LB@Unfolding Energy - sRNA 5.55277 kcal/mol@LB@@LB@Position - mRNA 32 -- 61@LB@Position - sRNA 100 -- 129@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 78 |
0.002646 |
0.1315 |
bsu37410 |
albE |
-16.69 |
0.014616 |
33 -- 81 |
32 -- 77 |
antilisterial bacteriocin subtilosin biosynthesis protein AlbE |
|
_____________32_________________________________________________82\n_____________|__________________________________________________|\n5'-CUU...AUGGA_______CU_____AU____GU_______G__UUGUC______UA_____AGCCA...AAA-3'\n______________GCGGUUU___CAAA__AUCG__CUUAUCU_UU_____UUCCCC__UUCUU\n______________||::|:|___||||__||||__|::||||_||_____||||||__|||||\n______________CGUUAGA___GUUU__UAGC__GGGUAGA_AA_____AAGGGG__AAGAA\n3'-AUU...AGCAA_______ACC____GU____AU_______G__U__________UA_____ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________78_________________________________________________31\n |
54 -- 60 |
49 -- 55 |
-34.8992 kcal/mol |
7.30498 kcal/mol |
13.8943 kcal/mol |
32 82@LB@ | |@LB@5'-CUU...AUGGA CU AU GU G UUGUC UA AGCCA...AAA-3'@LB@ GCGGUUU CAAA AUCG CUUAUCU UU UUCCCC UUCUU@LB@ ||::|:| |||| |||| |::|||| || |||||| |||||@LB@ CGUUAGA GUUU UAGC GGGUAGA AA AAGGGG AAGAA@LB@3'-AUU...AGCAA ACC GU AU G U UA ACUUU...CAA-5'@LB@ | |@LB@ 78 31@LB@@LB@@LB@Energy -16.69 kcal/mol@LB@Hybridization Energy -34.8992 kcal/mol@LB@Unfolding Energy - mRNA 7.30498 kcal/mol@LB@Unfolding Energy - sRNA 13.8943 kcal/mol@LB@@LB@Position - mRNA 33 -- 81@LB@Position - sRNA 32 -- 77@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 17 |
0.0005293 |
0.1011 |
bsu19390 |
yojN |
-14.35 |
0.045317 |
34 -- 87 |
125 -- 170 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15491156; Product type pe : enzyme' |
|
_____________33_______________________________________________________88\n_____________|________________________________________________________|\n5'-AAC...UGCAU_____A_____G____AGC_____AUUAUC_____AAC___AA_____________GUGCG...CUA-3'\n______________UUAUU_UUCAU_AACA___GGACG______UGACA____CC__GCGGCAA_UUCCG\n______________|||:|_|||||_||||___||||:______|||||____||__||:||||_||||:\n______________AAUGA_AAGUA_UUGU___CCUGU______ACUGU____GG__CGUCGUU_AAGGU\n3'-AUU...AAAAA_____G_____G____________A__________AACA___________C_____AUAUU...CAA-5'\n_____________|________________________________________________________|\n_____________171______________________________________________________124\n |
76 -- 82 |
131 -- 137 |
-33.3587 kcal/mol |
7.78061 kcal/mol |
10.3745 kcal/mol |
33 88@LB@ | |@LB@5'-AAC...UGCAU A G AGC AUUAUC AAC AA GUGCG...CUA-3'@LB@ UUAUU UUCAU AACA GGACG UGACA CC GCGGCAA UUCCG@LB@ |||:| ||||| |||| ||||: ||||| || ||:|||| ||||:@LB@ AAUGA AAGUA UUGU CCUGU ACUGU GG CGUCGUU AAGGU@LB@3'-AUU...AAAAA G G A AACA C AUAUU...CAA-5'@LB@ | |@LB@ 171 124@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -33.3587 kcal/mol@LB@Unfolding Energy - mRNA 7.78061 kcal/mol@LB@Unfolding Energy - sRNA 10.3745 kcal/mol@LB@@LB@Position - mRNA 34 -- 87@LB@Position - sRNA 125 -- 170@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 195 |
0.008951 |
0.1751 |
bsu05080 |
yddR |
-8.99 |
0.454521 |
34 -- 81 |
5 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________33________________________________________________82\n_____________|_________________________________________________|\n5'-AUC...UAAUU_____AUA_________C_G_____UCUAUUU____________C____CGAAA...CUA-3'\n______________UCUCU___AUUUUUUAU_U_UUUGA_______GAACGUU_AAUU_CUUU\n______________|||||___|||::::||_|_|||||_______:||||:|_||||_||||\n______________AGAGA___UAAGGGGUA_A_AAACU_______UUUGCGA_UUAA_GAAA\n3'-AUU...UGGGU_____A___________A_G_____UUAAACU_______A____A____ACAA-5'\n_____________|_________________________________________________|\n_____________52________________________________________________4\n |
66 -- 72 |
15 -- 21 |
-22.8936 kcal/mol |
6.26634 kcal/mol |
10.4335 kcal/mol |
33 82@LB@ | |@LB@5'-AUC...UAAUU AUA C G UCUAUUU C CGAAA...CUA-3'@LB@ UCUCU AUUUUUUAU U UUUGA GAACGUU AAUU CUUU@LB@ ||||| |||::::|| | ||||| :||||:| |||| ||||@LB@ AGAGA UAAGGGGUA A AAACU UUUGCGA UUAA GAAA@LB@3'-AUU...UGGGU A A G UUAAACU A A ACAA-5'@LB@ | |@LB@ 52 4@LB@@LB@@LB@Energy -8.99 kcal/mol@LB@Hybridization Energy -22.8936 kcal/mol@LB@Unfolding Energy - mRNA 6.26634 kcal/mol@LB@Unfolding Energy - sRNA 10.4335 kcal/mol@LB@@LB@Position - mRNA 34 -- 81@LB@Position - sRNA 5 -- 51@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 125 |
0.005817 |
0.1741 |
bsu26980 |
yraE |
-11.00 |
0.208718 |
35 -- 90 |
112 -- 185 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________34________________________________________________________91\n_____________|_________________________________________________________|\n5'-UAC...UUUGA___AG______________AA_______A____GGA_____________________AGCCA...CUG-3'\n______________ACU___UAUCGACAGG_CA_____AUUG_UCCG_______________GAUGUUGUC\n______________|||___:|||:|||||_||_____||||_||||_______________:||||||||\n______________UGA___GUAGUUGUCC_GU_____UAAC_AGGC_______________UUACAACAG\n3'-AUU...AAAAA___GAA__________U__AACUG_________GUCGUUCAAGGUAUA_________UGAAA...CAA-5'\n_____________|_________________________________________________________|\n_____________186_______________________________________________________111\n |
83 -- 89 |
113 -- 119 |
-30.5681 kcal/mol |
8.54797 kcal/mol |
10.8348 kcal/mol |
34 91@LB@ | |@LB@5'-UAC...UUUGA AG AA A GGA AGCCA...CUG-3'@LB@ ACU UAUCGACAGG CA AUUG UCCG GAUGUUGUC@LB@ ||| :|||:||||| || |||| |||| :||||||||@LB@ UGA GUAGUUGUCC GU UAAC AGGC UUACAACAG@LB@3'-AUU...AAAAA GAA U AACUG GUCGUUCAAGGUAUA UGAAA...CAA-5'@LB@ | |@LB@ 186 111@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -30.5681 kcal/mol@LB@Unfolding Energy - mRNA 8.54797 kcal/mol@LB@Unfolding Energy - sRNA 10.8348 kcal/mol@LB@@LB@Position - mRNA 35 -- 90@LB@Position - sRNA 112 -- 185@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 6 |
0.0001543 |
0.08823 |
bsu10740 |
yisJ |
-16.00 |
0.020473 |
36 -- 139 |
34 -- 134 |
inner spore coat protein H-like protein |
|
_____________35____________________________________________________140\n_____________|_____________________________________________________|\n5'-GGC...GUUCC______GCAAAUUUCAUG_______U____CA_____U____C__________CCUUC...UUC-3'\n______________CCUGUC____________UUAUUCC_CCAU__UCUUU_AAAU___AGAAUGCU\n______________||::||____________|||||||_||||__|||||_||||___|:||:|||\n______________GGGUAG____________AAUAAGG_GGUA__AGAAA_UUUA___UUUUGCGA\n3'-AUU...AGCAU______AG______________________A______C____AAC________AUUAA...CAA-5'\n_____________|_____________________________________________________|\n_____________135___________________________________________________33\n |
74 -- 80 |
15 -- 21 |
-28.1573 kcal/mol |
3.71522 kcal/mol |
11.7008 kcal/mol |
35 140@LB@ | |@LB@5'-GGC...GUUCC GCAAAUUUCAUG U CA U C CCUUC...UUC-3'@LB@ CCUGUC UUAUUCC CCAU UCUUU AAAU AGAAUGCU@LB@ ||::|| ||||||| |||| ||||| |||| |:||:|||@LB@ GGGUAG AAUAAGG GGUA AGAAA UUUA UUUUGCGA@LB@3'-AUU...AGCAU AG A C AAC AUUAA...CAA-5'@LB@ | |@LB@ 135 33@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -28.1573 kcal/mol@LB@Unfolding Energy - mRNA 3.71522 kcal/mol@LB@Unfolding Energy - sRNA 11.7008 kcal/mol@LB@@LB@Position - mRNA 36 -- 139@LB@Position - sRNA 34 -- 134@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 120 |
0.005453 |
0.1741 |
bsu38750 |
cydB |
-16.17 |
0.018868 |
36 -- 121 |
37 -- 136 |
cytochrome d ubiquinol oxidase subunit 2 |
|
_____________35____________________________________________________________________________________________________________122\n_____________|_____________________________________________________________________________________________________________|\n5'-AAU...CGUAA___________________________C__AA_____GCA_____U______UAC___AU__________________________________U________A_____GAGAU...CCC-3'\n______________CAGCGGGUUCC________UUGUUAUU_UC__UCAUC___UUCGG_GUGAUG___AUG____________UCUUGGU__GCA__C_UGCUUGUC_UCUUGUUU_UCCGU\n______________||||::|||||________||||:|:|_||__|||||___|||::_||:|||___|||____________||||||:__:||__|_|:|:::||_||||:||:_:||:|\n______________GUCGUUCAAGG________AACAGUGA_AG__AGUAG___AAGUU_CAUUAC___UAC____________AGAACCG__UGU__G_AUGGGUAG_AGAAUAAG_GGGUA\n3'-AUU...CAGGC___________UAUAUUAC________A_________________U______U_____CGAAGCAACGUU_______UU___UA_C_______________________AAGAA...CAA-5'\n_____________|_____________________________________________________________________________________________________________|\n_____________137___________________________________________________________________________________________________________36\n |
109 -- 115 |
42 -- 48 |
-60.5971 kcal/mol |
23.6183 kcal/mol |
24.7809 kcal/mol |
35 122@LB@ | |@LB@5'-AAU...CGUAA C AA GCA U UAC AU U A GAGAU...CCC-3'@LB@ CAGCGGGUUCC UUGUUAUU UC UCAUC UUCGG GUGAUG AUG UCUUGGU GCA C UGCUUGUC UCUUGUUU UCCGU@LB@ ||||::||||| ||||:|:| || ||||| |||:: ||:||| ||| ||||||: :|| | |:|:::|| ||||:||: :||:|@LB@ GUCGUUCAAGG AACAGUGA AG AGUAG AAGUU CAUUAC UAC AGAACCG UGU G AUGGGUAG AGAAUAAG GGGUA@LB@3'-AUU...CAGGC UAUAUUAC A U U CGAAGCAACGUU UU UA C AAGAA...CAA-5'@LB@ | |@LB@ 137 36@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -60.5971 kcal/mol@LB@Unfolding Energy - mRNA 23.6183 kcal/mol@LB@Unfolding Energy - sRNA 24.7809 kcal/mol@LB@@LB@Position - mRNA 36 -- 121@LB@Position - sRNA 37 -- 136@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 42 -- 48@LB@ |
