177 |
0.008148 |
0.1751 |
bsu37320 |
narK |
-12.38 |
0.113512 |
147 -- 292 |
34 -- 178 |
nitrite extrusion protein |
|
_____________146________________________________________________________________________________________________________________________________________________________293\n_____________|__________________________________________________________________________________________________________________________________________________________|\n5'-CAA...UUGGC__G_______AU____A___UGAUU_____AU_____AAA_G___________A_____CAACC__CAA___A___AA_____G___C___CAUUAA______G__G___________UU______UGG_____G_________CA________CCAAAUCA-3'\n______________UA_UUUUUGU__GAUA_GAC_____AUUGA__CAUUG___G_GGCAAG__CCA_AUGAU_____GU___CAC_UUC__UUAUC_UUA_AGU________GCUU_GU_GCAG____GGU__AUGGUU___GUGCU_AUUUC__AU__CUCAUUUC\n______________||_|:||::|__:|:|_|||_____|||||__|||||___|_:|||||__|||_||:||_____||___|||_|||__|:|||_|:|_|||________||||_||_|||:____||:__|:::|:___||:|:_||:||__||__|:||||||\n______________AU_AGAAGUA__UUGU_CUG_____UAACU__GUAAC___C_UCGUUC__GGU_UAUUA_____CA___GUG_AAG__AGUAG_AGU_UCA________CGAA_CA_CGUU____CCG__UGUUAG___CAUGG_UAGAG__UA__GGGUAAAG\n3'-AUU...AAAAA__G_______G_____C____________________AGG_G______AA___A____________ACA___A__________A___U___UUACUUAC____G__A____AGAA___UU______________G_____AA__AG________AAACU...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________________|\n_____________179________________________________________________________________________________________________________________________________________________________33\n |
286 -- 292 |
34 -- 40 |
-71.0788 kcal/mol |
32.1142 kcal/mol |
31.2836 kcal/mol |
146 293@LB@ | |@LB@5'-CAA...UUGGC G AU A UGAUU AU AAA G A CAACC CAA A AA G C CAUUAA G G UU UGG G CA CCAAAUCA-3'@LB@ UA UUUUUGU GAUA GAC AUUGA CAUUG G GGCAAG CCA AUGAU GU CAC UUC UUAUC UUA AGU GCUU GU GCAG GGU AUGGUU GUGCU AUUUC AU CUCAUUUC@LB@ || |:||::| :|:| ||| ||||| ||||| | :||||| ||| ||:|| || ||| ||| |:||| |:| ||| |||| || |||: ||: |:::|: ||:|: ||:|| || |:||||||@LB@ AU AGAAGUA UUGU CUG UAACU GUAAC C UCGUUC GGU UAUUA CA GUG AAG AGUAG AGU UCA CGAA CA CGUU CCG UGUUAG CAUGG UAGAG UA GGGUAAAG@LB@3'-AUU...AAAAA G G C AGG G AA A ACA A A U UUACUUAC G A AGAA UU G AA AG AAACU...CAA-5'@LB@ | |@LB@ 179 33@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -71.0788 kcal/mol@LB@Unfolding Energy - mRNA 32.1142 kcal/mol@LB@Unfolding Energy - sRNA 31.2836 kcal/mol@LB@@LB@Position - mRNA 147 -- 292@LB@Position - sRNA 34 -- 178@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 34 -- 40@LB@ |
107 |
0.004539 |
0.1633 |
bsu11020 |
yitK |
-8.14 |
0.595243 |
151 -- 171 |
155 -- 171 |
nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription |
|
_____________150___________________172\n_____________|_____________________|\n5'-ACC...UUCUC________ACUAUA_______CAUAA...AUG-3'\n______________UUUAUUCU______AUCAACA\n______________||||:|||______|||||||\n______________AAAUGAGA______UAGUUGU\n3'-AUU...AAAAA________AG___________CCUGU...CAA-5'\n_____________|_____________________|\n_____________172___________________154\n |
165 -- 171 |
155 -- 161 |
-10.3591 kcal/mol |
1.70839 kcal/mol |
1.4241 kcal/mol |
150 172@LB@ | |@LB@5'-ACC...UUCUC ACUAUA CAUAA...AUG-3'@LB@ UUUAUUCU AUCAACA@LB@ ||||:||| |||||||@LB@ AAAUGAGA UAGUUGU@LB@3'-AUU...AAAAA AG CCUGU...CAA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -10.3591 kcal/mol@LB@Unfolding Energy - mRNA 1.70839 kcal/mol@LB@Unfolding Energy - sRNA 1.4241 kcal/mol@LB@@LB@Position - mRNA 151 -- 171@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 155 -- 161@LB@ |
172 |
0.008071 |
0.1751 |
bsu03860 |
ycnD |
-16.76 |
0.014170 |
153 -- 167 |
135 -- 149 |
FMN reductase |
|
_____________152_____________168\n_____________|_______________|\n5'-CGC...UCCUC_______________CAGAG...CGG-3'\n______________UUGAUGUUGUCCGCA\n______________||||::|||||||||\n______________AACUGUAACAGGCGU\n3'-AUU...CCUGU_______________CGUUC...CAA-5'\n_____________|_______________|\n_____________150_____________134\n |
161 -- 167 |
135 -- 141 |
-23.0656 kcal/mol |
2.48067 kcal/mol |
5.52377 kcal/mol |
152 168@LB@ | |@LB@5'-CGC...UCCUC CAGAG...CGG-3'@LB@ UUGAUGUUGUCCGCA@LB@ ||||::|||||||||@LB@ AACUGUAACAGGCGU@LB@3'-AUU...CCUGU CGUUC...CAA-5'@LB@ | |@LB@ 150 134@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -23.0656 kcal/mol@LB@Unfolding Energy - mRNA 2.48067 kcal/mol@LB@Unfolding Energy - sRNA 5.52377 kcal/mol@LB@@LB@Position - mRNA 153 -- 167@LB@Position - sRNA 135 -- 149@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 135 -- 141@LB@ |
79 |
0.002683 |
0.1316 |
bsu12250 |
yjkB |
-15.23 |
0.029777 |
154 -- 245 |
42 -- 131 |
ABC transporter ATP-binding protein |
|
_____________153__________________________________________________________246\n_____________|____________________________________________________________|\n5'-AUA...UGAAA___GA__A_______GGAA__________AAACACAAAACAUACC_G_______C_____AGAUC...AGG-3'\n______________GGU__UU_UUGUAAU____GCAAACGAUC________________A_CCAUCUC___UUC\n______________||:__|:_|||:|||____||||||:|||________________|_|||||||___|||\n______________CCG__AG_AACGUUA____CGUUUGUUAG________________U_GGUAGAG___AAG\n3'-AUU...ACUUA___A___C_______GAAC__________CA_______________G_______AAU___GGGUA...CAA-5'\n_____________|____________________________________________________________|\n_____________132__________________________________________________________41\n |
235 -- 241 |
48 -- 54 |
-30.736 kcal/mol |
10.3673 kcal/mol |
9.19615 kcal/mol |
153 246@LB@ | |@LB@5'-AUA...UGAAA GA A GGAA AAACACAAAACAUACC G C AGAUC...AGG-3'@LB@ GGU UU UUGUAAU GCAAACGAUC A CCAUCUC UUC@LB@ ||: |: |||:||| ||||||:||| | ||||||| |||@LB@ CCG AG AACGUUA CGUUUGUUAG U GGUAGAG AAG@LB@3'-AUU...ACUUA A C GAAC CA G AAU GGGUA...CAA-5'@LB@ | |@LB@ 132 41@LB@@LB@@LB@Energy -15.23 kcal/mol@LB@Hybridization Energy -30.736 kcal/mol@LB@Unfolding Energy - mRNA 10.3673 kcal/mol@LB@Unfolding Energy - sRNA 9.19615 kcal/mol@LB@@LB@Position - mRNA 154 -- 245@LB@Position - sRNA 42 -- 131@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 48 -- 54@LB@ |
141 |
0.006569 |
0.1741 |
bsu19520 |
yojA |
-12.26 |
0.119762 |
158 -- 180 |
120 -- 146 |
permease YojA |
bsu40070 |
_____________157_________________________________________________________181\n_____________|___________________________________________________________|\n5'-GGU...GCUUU__G________________GAAAAGCGCCAAA_________________AA________AACAC...UUU-3'\n______________CU_UUCAUC__UAGG_CAU_____________ACAUUGUC____GCGAG__UCAUAUAA\n______________||_||||||__:|||_|||_____________||||||||____||:||__:|||||||\n______________GA_AAGUAG__GUCC_GUA_____________UGUAACAG____CGUUC__GGUAUAUU\n3'-AUU...AAAAU__G______UU____U___AC___________________GCGU_____AA________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________147_________________________________________________________119\n |
174 -- 180 |
120 -- 126 |
-32.1826 kcal/mol |
10.1468 kcal/mol |
10.5645 kcal/mol |
157 181@LB@ | |@LB@5'-GGU...GCUUU G GAAAAGCGCCAAA AA AACAC...UUU-3'@LB@ CU UUCAUC UAGG CAU ACAUUGUC GCGAG UCAUAUAA@LB@ || |||||| :||| ||| |||||||| ||:|| :|||||||@LB@ GA AAGUAG GUCC GUA UGUAACAG CGUUC GGUAUAUU@LB@3'-AUU...AAAAU G UU U AC GCGU AA ACAAC...CAA-5'@LB@ | |@LB@ 147 119@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -32.1826 kcal/mol@LB@Unfolding Energy - mRNA 10.1468 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 158 -- 180@LB@Position - sRNA 120 -- 146@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 120 -- 126@LB@ |
93 |
0.003652 |
0.1515 |
bsu03060 |
lctP |
-13.96 |
0.054584 |
161 -- 227 |
49 -- 115 |
L-lactate permease |
bsu34190 |
_____________160_______________________________________________________________________228\n_____________|_________________________________________________________________________|\n5'-CGG...AAAAA___A___AACCG__A___________AG_______GA____U____G_______________AUG________GGAAA...UGA-3'\n______________GUC_ACU_____CA_CUUUAGAGUAA_____GGCU___UUG_CAAU__UGG_GAGCAGUUGU___AUCCGUUU\n______________|||_|||_____||_|||:|:|||||_____||||___|||_||||__|||_:|:||:|:||___|:||:|:|\n______________CAG_UGA_____GU_GAAGUUUCAUU_____CCGA___AAC_GUUA__ACC_UUUGUUAGCA___UGGGUAGA\n3'-AUU...UACAA_______AAGA___A___________ACUUA____AGC________GA___G_____________________GAAUA...CAA-5'\n_____________|_________________________________________________________________________|\n_____________116_______________________________________________________________________48\n |
220 -- 226 |
50 -- 56 |
-45.5058 kcal/mol |
15.3983 kcal/mol |
19.8755 kcal/mol |
160 228@LB@ | |@LB@5'-CGG...AAAAA A AACCG A AG GA U G AUG GGAAA...UGA-3'@LB@ GUC ACU CA CUUUAGAGUAA GGCU UUG CAAU UGG GAGCAGUUGU AUCCGUUU@LB@ ||| ||| || |||:|:||||| |||| ||| |||| ||| :|:||:|:|| |:||:|:|@LB@ CAG UGA GU GAAGUUUCAUU CCGA AAC GUUA ACC UUUGUUAGCA UGGGUAGA@LB@3'-AUU...UACAA AAGA A ACUUA AGC GA G GAAUA...CAA-5'@LB@ | |@LB@ 116 48@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -45.5058 kcal/mol@LB@Unfolding Energy - mRNA 15.3983 kcal/mol@LB@Unfolding Energy - sRNA 19.8755 kcal/mol@LB@@LB@Position - mRNA 161 -- 227@LB@Position - sRNA 49 -- 115@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 50 -- 56@LB@ |
111 |
0.004819 |
0.1671 |
bsu32120 |
yuzG |
-7.22 |
0.752372 |
165 -- 182 |
149 -- 166 |
Evidence 5: No homology to any previously reported sequences |
|
_____________164______________________________________183\n_____________|________________________________________|\n5'-UAG...UCUUU_____A_G_ACA__G__AAG__A________GAUG_____AAACG...UGG-3'\n______________AUGGC_U_G___UG_GA____G_GCGAAUAA____GCCCA\n______________|||||_|_|___||_:|____|_||:||:||____:||||\n______________UACCG_A_C___AC_UU____C_CGUUUGUU____UGGGU\n3'-AUU...UUACU_____A_G_A____G__AGAA__________AGCA_____AGAGA...CAA-5'\n_____________|________________________________________|\n_____________167______________________________________148\n |
192 -- 198 |
62 -- 68 |
-24.2214 kcal/mol |
8.24153 kcal/mol |
10.1588 kcal/mol |
164 183@LB@ | |@LB@5'-UAG...UCUUU A G ACA G AAG A GAUG AAACG...UGG-3'@LB@ AUGGC U G UG GA G GCGAAUAA GCCCA@LB@ ||||| | | || :| | ||:||:|| :||||@LB@ UACCG A C AC UU C CGUUUGUU UGGGU@LB@3'-AUU...UUACU A G A G AGAA AGCA AGAGA...CAA-5'@LB@ | |@LB@ 167 148@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -24.2214 kcal/mol@LB@Unfolding Energy - mRNA 8.24153 kcal/mol@LB@Unfolding Energy - sRNA 10.1588 kcal/mol@LB@@LB@Position - mRNA 165 -- 182@LB@Position - sRNA 149 -- 166@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 62 -- 68@LB@ |
147 |
0.006774 |
0.1741 |
bsu08550 |
sspK |
-14.99 |
0.033457 |
165 -- 208 |
137 -- 183 |
small acid-soluble spore protein K |
|
_____________164_____________________________209\n_____________|_______________________________|\n5'-UUU...UUGAU___GAACC___G_____________G_____AAAUA...ACG-3'\n______________CUC_____UAG_GGGAUAU_GACAU_GUCCG\n______________|||_____:|:_:|||:||_|||||_|||||\n______________GAG_____GUU_UCCUGUA_CUGUA_CAGGC\n3'-AUU...AAAAU___AAGUA___G_______A_____A_____GUCGU...CAA-5'\n_____________|_______________________________|\n_____________184_____________________________136\n |
191 -- 197 |
149 -- 155 |
-28.8408 kcal/mol |
8.70873 kcal/mol |
7.49334 kcal/mol |
164 209@LB@ | |@LB@5'-UUU...UUGAU GAACC G G AAAUA...ACG-3'@LB@ CUC UAG GGGAUAU GACAU GUCCG@LB@ ||| :|: :|||:|| ||||| |||||@LB@ GAG GUU UCCUGUA CUGUA CAGGC@LB@3'-AUU...AAAAU AAGUA G A A GUCGU...CAA-5'@LB@ | |@LB@ 184 136@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -28.8408 kcal/mol@LB@Unfolding Energy - mRNA 8.70873 kcal/mol@LB@Unfolding Energy - sRNA 7.49334 kcal/mol@LB@@LB@Position - mRNA 165 -- 208@LB@Position - sRNA 137 -- 183@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 149 -- 155@LB@ |
166 |
0.007737 |
0.1751 |
bsu10770 |
wprA |
-9.60 |
0.364837 |
176 -- 232 |
111 -- 164 |
cell wall-associated protease |
|
_____________175_________________________________________________________233\n_____________|___________________________________________________________|\n5'-CUG...GGAGA_______UUUU______G_GAUA____GAAA_____AAAA_____GCUCG______G__GGCAG...GCG-3'\n______________UUCAUUA____GCAGGA_G____ACAU____CGCAG_____UUCA______GUUGU_GC\n______________|||||:|____:|||||_:____||||____|||||_____|:||______|||||_:|\n______________AAGUAGU____UGUCCU_U____UGUA____GCGUC_____AGGU______CAACA_UG\n3'-AUU...AUGAG_________________G_AAC_____ACAG_____GUUCA____AUAUUA_____G__AAAGA...CAA-5'\n_____________|___________________________________________________________|\n_____________165_________________________________________________________110\n |
176 -- 182 |
158 -- 164 |
-36.1081 kcal/mol |
15.1078 kcal/mol |
11.9485 kcal/mol |
175 233@LB@ | |@LB@5'-CUG...GGAGA UUUU G GAUA GAAA AAAA GCUCG G GGCAG...GCG-3'@LB@ UUCAUUA GCAGGA G ACAU CGCAG UUCA GUUGU GC@LB@ |||||:| :||||| : |||| ||||| |:|| ||||| :|@LB@ AAGUAGU UGUCCU U UGUA GCGUC AGGU CAACA UG@LB@3'-AUU...AUGAG G AAC ACAG GUUCA AUAUUA G AAAGA...CAA-5'@LB@ | |@LB@ 165 110@LB@@LB@@LB@Energy -9.60 kcal/mol@LB@Hybridization Energy -36.1081 kcal/mol@LB@Unfolding Energy - mRNA 15.1078 kcal/mol@LB@Unfolding Energy - sRNA 11.9485 kcal/mol@LB@@LB@Position - mRNA 176 -- 232@LB@Position - sRNA 111 -- 164@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 158 -- 164@LB@ |
143 |
0.006663 |
0.1741 |
bsu05790 |
ydhK |
-18.88 |
0.004963 |
179 -- 222 |
125 -- 163 |
Evidence 5: No homology to any previously reported sequences |
|
_____________178__________________________________________223\n_____________|____________________________________________|\n5'-GUG...UAGUA_______G_______GUUUU____________G__AA___UA__GGAAA...UUU-3'\n______________UUAUCGA_AGGGCAU_____CAUUGUCUGCGG_CA__AGU__CA\n______________|:|||:|_|||:|||_____|||||||:||:|_||__|||__||\n______________AGUAGUU_UCCUGUA_____GUAACAGGCGUC_GU__UCA__GU\n3'-AUU...UGAGA_______G_______ACU______________________AG__AUAUU...CAA-5'\n_____________|____________________________________________|\n_____________164__________________________________________124\n |
204 -- 210 |
134 -- 140 |
-40.9125 kcal/mol |
11.6904 kcal/mol |
10.3584 kcal/mol |
178 223@LB@ | |@LB@5'-GUG...UAGUA G GUUUU G AA UA GGAAA...UUU-3'@LB@ UUAUCGA AGGGCAU CAUUGUCUGCGG CA AGU CA@LB@ |:|||:| |||:||| |||||||:||:| || ||| ||@LB@ AGUAGUU UCCUGUA GUAACAGGCGUC GU UCA GU@LB@3'-AUU...UGAGA G ACU AG AUAUU...CAA-5'@LB@ | |@LB@ 164 124@LB@@LB@@LB@Energy -18.88 kcal/mol@LB@Hybridization Energy -40.9125 kcal/mol@LB@Unfolding Energy - mRNA 11.6904 kcal/mol@LB@Unfolding Energy - sRNA 10.3584 kcal/mol@LB@@LB@Position - mRNA 179 -- 222@LB@Position - sRNA 125 -- 163@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 134 -- 140@LB@ |